View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11999_high_3 (Length: 303)
Name: NF11999_high_3
Description: NF11999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11999_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 1223641 - 1223888
Alignment:
| Q |
1 |
tttatactaatcaccaaatcacataacaataacgattttttcaaattctgctatgctataacaatataacacaccgctatttaacaacattggcggggtc |
100 |
Q |
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| T |
1223641 |
tttatactaatcaccatatcacataacaataacgattttttcaaattctgctatgttataacaatataacacaccactatttaacaacattggcggggtc |
1223740 |
T |
|
| Q |
101 |
caaaattctaattatagtgaattagc-nnnnnnncatctttcaacgtgaattgacccatccgatcttaatttaaccaccgagatcatctaataccgactc |
199 |
Q |
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| T |
1223741 |
caaaatcctaattatagtgaattagcaaaaaaaacatctttcaacgtgaattgacccatcccatcttaatttaaccaccgagatcatctaataccgactc |
1223840 |
T |
|
| Q |
200 |
gatgattaatctcatagcagatccaaataacttaacttttagtattcaa |
248 |
Q |
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| T |
1223841 |
gatgattaatctcatagca-atccaaataacttaacttttagtattcaa |
1223888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 18841746 - 18841709
Alignment:
| Q |
25 |
aacaataacgattttttcaaattctgctatgctataac |
62 |
Q |
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| T |
18841746 |
aacaacaacgattttttcaaattctgttatgctataac |
18841709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 25314062 - 25314106
Alignment:
| Q |
18 |
atcacataacaataacgattttttcaaattctgctatgctataac |
62 |
Q |
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| T |
25314062 |
atcacagaacaataacgatttgttcaaattcctctatgctataac |
25314106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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