View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11999_low_2 (Length: 527)
Name: NF11999_low_2
Description: NF11999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11999_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 52 - 516
Target Start/End: Original strand, 43428063 - 43428523
Alignment:
| Q |
52 |
taataatatccatttagaaaagtattaaattattcttttttacacgcttttattgatggtcaaatcccatatatgtgttacctatgaatnnnnnnn-tga |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43428063 |
taataatatccatttagaaaagtattaaattattcttttttacacacttttattgatggtcaaatcccatatatgtgttacctatgaataaaaaaaatga |
43428162 |
T |
|
| Q |
151 |
atccaaatgaataacttaacaagattcacataaaattcaccaaataaatacaaaagatgcattaaaaaagtgtaacaaaatgttttgttactaccatttc |
250 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43428163 |
atccaaatcaataacttaacaagattcacataaaattcaccaaataaatacaaaagatgcattaaaaaagtgtaacaaaatgttttgttactaccatttc |
43428262 |
T |
|
| Q |
251 |
ttatccatagataatatatgacatatataatgaggagagttgaaaatgtactatgctttataaatacacataatgttttacgtgggactcattagcccaa |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43428263 |
ttatccatagataatatatgacatatataatgaggagagttgaaaatgtactatgctttataaatacacataatgttttacgtgggactcattagcccaa |
43428362 |
T |
|
| Q |
351 |
cctcttgcagtcccacaaaccgccccaaatgccacaacttgcttgatattcactatttctttgtttgatgaagcaaccccaccacaccacacccccctta |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43428363 |
cctcttgcagtcccacaaaccgccccaaatgccacaacttgcttgatatgcactatttctttgtttgatgaagcaaccc-----caccacacccccctta |
43428457 |
T |
|
| Q |
451 |
tcaaaatgatgacaaaaatgcattctaataatgtggggtccacaattcaccttccaatagtttctt |
516 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43428458 |
tcaaaatgatgagaaaaatgcattctaataatgtggggcccacaattcaccttccaatagtttctt |
43428523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43427985 - 43428031
Alignment:
| Q |
1 |
aattttctttccagaaactattatgttaaaatatgcacgtaatgcac |
47 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43427985 |
aattttctttctagaaactattatgttaaaatatgcacgtaatgcac |
43428031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University