View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11999_low_4 (Length: 296)
Name: NF11999_low_4
Description: NF11999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11999_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 4926862 - 4926593
Alignment:
| Q |
1 |
aaattggtcgcacttctaaatattttgaaactgcacacaatactgagcaatacttcaggggaggttgctctttaggcaccctataattgctcaaaaatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4926862 |
aaattggtcgcacttctaaatattttgaaactgcacacaatactgagcaatatttcaggggaggttgctctttaggcaccctatacttgctcaaaaatgc |
4926763 |
T |
|
| Q |
101 |
aattacagtttgttgaacgacaattaagtgtcgttcgtcataaaacagtatttaattgtcatttgaaannnnnnnagatcggtcaaatcactttttaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
4926762 |
aattacagtttgttgaacgacaattaagtgtcgttcgtcataaaacggtatttaattgtcattcgaaatttttttagatcggtcaaatcactttttaaat |
4926663 |
T |
|
| Q |
201 |
cagtttaactgatttaaaaagtcactcaaacggtaattaacggtcgttaaaagtatcttcgtcggttgag |
270 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4926662 |
cagtttaactgatttaaaaagtcactcaaacggtagttaacggtcgttaaaagtatcttcgtcggttgag |
4926593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 43638506 - 43638554
Alignment:
| Q |
68 |
ctctttaggcaccctataattgctcaaaaatgcaattacagtttgttga |
116 |
Q |
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| T |
43638506 |
ctctttaggcaccctctaattgctaaaaaatgcaactacagttggttga |
43638554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 4926641 - 4926673
Alignment:
| Q |
190 |
actttttaaatcagtttaactgatttaaaaagt |
222 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
4926641 |
actttttaaatcagttaaactgatttaaaaagt |
4926673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 29943230 - 29943197
Alignment:
| Q |
189 |
cactttttaaatcagtttaactgatttaaaaagt |
222 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
29943230 |
cactttttaaatcagtttaactgatttaaaaagt |
29943197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 26225871 - 26225908
Alignment:
| Q |
186 |
aatcactttttaaatcagtttaactgatttaaaaagtc |
223 |
Q |
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||||| ||||||||||||||||||| |||||||||||| |
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| T |
26225871 |
aatcaatttttaaatcagtttaactaatttaaaaagtc |
26225908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 29943196 - 29943229
Alignment:
| Q |
189 |
cactttttaaatcagtttaactgatttaaaaagt |
222 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
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|
| T |
29943196 |
cactttttaaatcagttaaactgatttaaaaagt |
29943229 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 24613790 - 24613748
Alignment:
| Q |
178 |
atcggtcaaatcactttttaaatcagtttaactgatttaaaaa |
220 |
Q |
| |
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|||||| |||| |||||| |||||||||||||||||||||||| |
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| T |
24613790 |
atcggttaaataacttttaaaatcagtttaactgatttaaaaa |
24613748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 23752134 - 23752172
Alignment:
| Q |
176 |
agatcggtcaaatcactttttaaatcagtttaactgatt |
214 |
Q |
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| T |
23752134 |
agatcggttcaatcactttttaaatcagtttaactgatt |
23752172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 18713226 - 18713272
Alignment:
| Q |
176 |
agatcggtcaaatcactttttaaatcagtttaactgatttaaaaagt |
222 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| |||||||||||| |
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| T |
18713226 |
agatcggtccaatcactttttaaattggtttaaccgatttaaaaagt |
18713272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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