View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11999_low_8 (Length: 229)
Name: NF11999_low_8
Description: NF11999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11999_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 44002451 - 44002252
Alignment:
| Q |
15 |
gacatcacaatagtattattatactataacatttttagttcagttcataatgcaatgtgcgagatttgaagcaaatattaagaaattagagcagcacttg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44002451 |
gacatcacaatagtattattatactataacatttttagttcagttcaaaatgcaatgtgcgagatttgaagcaaatattaagaaattagagcagcacttg |
44002352 |
T |
|
| Q |
115 |
gctgacattataacatctaaattgtgacttcaatcatggaaaaccaaatgacaaaccatctaagtgcttgtttgttttgaagttgcctccgtgtgtttgc |
214 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44002351 |
gctgacattataacatctaaatcgtgacttcaatcatggaaaaccaaatgacaaaccatctaagtgcttgtttgttttgaagttgcctccgtgtgtttgc |
44002252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 2643789 - 2643843
Alignment:
| Q |
47 |
ttttagttcagttcataatgcaatgtgcgagatttgaagcaaatattaagaaatt |
101 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
2643789 |
ttttagttcagttcataatgcattgtgcaagatttgaagcaaacattaagaaatt |
2643843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 43997984 - 43997837
Alignment:
| Q |
28 |
tattattatactataacatttttagttcagttcataatgcaatgtgcgagatttgaagcaaatattaagaaattagagcagcacttggctgacattataa |
127 |
Q |
| |
|
|||||||||| | |||||| ||||||||||||||||||| ||||| | ||||||||| |||||||| | ||| ||| ||||||| ||| |||| ||| |
|
|
| T |
43997984 |
tattattataatttaacatatttagttcagttcataatgtaatgttcaagatttgaaccaaatattgcaatatttgagtagcacttagctaacat--taa |
43997887 |
T |
|
| Q |
128 |
catctaaattgtgacttcaatcatggaaaaccaaatgacaaaccatctaa |
177 |
Q |
| |
|
||| ||||||| ||||||||| | ||| ||||||| ||||||||||| |
|
|
| T |
43997886 |
catataaattgcaacttcaatcttccgaaatcaaatgataaaccatctaa |
43997837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 7323830 - 7323904
Alignment:
| Q |
15 |
gacatcacaatagtattattatactataacatttttagttcagttcataatgcaatgtgcgagatttgaagcaaatattaa |
95 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
7323830 |
gacatcacaatagtattat------ataacatatttagtttagttcataatgcattgtgcaagatttgaagcaaacattaa |
7323904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 43992675 - 43992627
Alignment:
| Q |
15 |
gacatcacaatagtattattatactataacatttttagttcagttcata |
63 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43992675 |
gacataacgatagtattattatactataacatatttagttcagttcata |
43992627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 7318350 - 7318430
Alignment:
| Q |
15 |
gacatcacaatagtattattatactataacatttttagttcagttcataatgcaatgtgcgagatttgaagcaaatattaagaaatt |
101 |
Q |
| |
|
||||||||||||||||||| ||||||| || |||| ||||||||||||| ||||| |||||||||||||| ||||| ||||| |
|
|
| T |
7318350 |
gacatcacaatagtattat------ataacatattcagtttagttcataatgcattgtgcaagatttgaagcaaacattaaaaaatt |
7318430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 2502723 - 2502667
Alignment:
| Q |
39 |
tataacatttttagttcagttcataatgcaatgtgcgagatttgaagcaaatattaa |
95 |
Q |
| |
|
|||||||| || |||| ||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
2502723 |
tataacatattcagtttagttcataatgcattgtgcaagatttgaagcaaacattaa |
2502667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 134
Target Start/End: Original strand, 2658621 - 2658716
Alignment:
| Q |
39 |
tataacatttttagttcagttcataatgcaatgtgcgagatttgaagcaaatattaagaaattagagcagcacttggctgacattataacatctaa |
134 |
Q |
| |
|
|||||||| || |||| |||||||||||| ||||| |||||||||||||| ||||| | ||| | ||| |||| || |||||||| |||||||| |
|
|
| T |
2658621 |
tataacatattcagtttggttcataatgcagtgtgcaagatttgaagcaaacattaaaacatttgtgcaacactaagcagacattattacatctaa |
2658716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University