View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_11 (Length: 654)
Name: NF1199_high_11
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 118 - 615
Target Start/End: Complemental strand, 43118267 - 43117766
Alignment:
| Q |
118 |
tgggggttgaacttcgactcctctacttatgcatgtgagttctcaaatgactattgtcattttatctatctattaaaaaatgatttttattttacccttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43118267 |
tgggggttgaacttcgactcctctacttatgcatatgagttctcaaatgactattgttattttatctatctattaaaaaatgatttttattttacccttt |
43118168 |
T |
|
| Q |
218 |
gaattgctatatcccaagtattagaatgtgtatgatgaaattttgatgatgtttataccctctgttataacaatatataaggttgtggctcggccaatat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43118167 |
gaattgctatatcccaagtattagaatgtgtatgatgaaattttgatgatgtttataccctctgttataacaatatataaggttgtggctcggccaatat |
43118068 |
T |
|
| Q |
318 |
tnnnnnnnnnnnnnnnnnnnnnnngagttaacaacaaatggaaacatataattcttcattcactta------aaacccatgtataatttatattatactc |
411 |
Q |
| |
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| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43118067 |
tataaataaaataaaataaaaaatgagttaacaacaaatggaaacata--attcttcattcacttagtcctaaaacccatgtataatttatattatactc |
43117970 |
T |
|
| Q |
412 |
aattcattcacccgaacatctccattgaaaaatattcacctttgaaaacatgagaaatcattgcatcaaatttttcaacccgtgatatataatgcaatgt |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43117969 |
aattcattcacccgaacatctccattgaaaaatattcacctttgaaaacatgagaaatcattgcatcaaatttttcgacccgtgatatataatgcaatgt |
43117870 |
T |
|
| Q |
512 |
taataccaannnnnnnaccattttcttctaatttctcgtatgggttaacaatgacattttattctcgtagttttgttacatgagattttctctgaagagt |
611 |
Q |
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| T |
43117869 |
taataccaactttttaaccattttcttctaatttctcgtatgggttaacaatgacattttattatcgtagttttgttacatgagattttctctgaagagt |
43117770 |
T |
|
| Q |
612 |
gtat |
615 |
Q |
| |
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|||| |
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| T |
43117769 |
gtat |
43117766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 189
Target Start/End: Original strand, 6263105 - 6263135
Alignment:
| Q |
159 |
ctcaaatgactattgtcattttatctatcta |
189 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
6263105 |
ctcaaatgactattgtcattttatctatcta |
6263135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 9412399 - 9412358
Alignment:
| Q |
155 |
agttctcaaatgactattgtcattttatctatctattaaaaa |
196 |
Q |
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|||||||||||||||||||||||||||| ||| ||| ||||| |
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| T |
9412399 |
agttctcaaatgactattgtcattttatttatttataaaaaa |
9412358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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