View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1199_high_121 (Length: 317)
Name: NF1199_high_121
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_121 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 317
Target Start/End: Complemental strand, 6514004 - 6513697
Alignment:
| Q |
10 |
aacaatatcaacataattaaaaaataaaacatcgtaattaatagtagcaatgccaccattataaatccaacaacatttaacaagtctcaaactaaaactc |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6514004 |
aacactatcaacataattaaaaaataaaacattgtaattaatagtagcaatgccaccattataaatccaacaacatttaacaagtctcaaactaaaactc |
6513905 |
T |
|
| Q |
110 |
accgacataaaacaaatctcaatgaatctaacaaccaaggagttggagcggaggcaatgacgatccctagtaagcacaatggaagcagtgctcttctcac |
209 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
6513904 |
accgacctaaaacaaatctcaatgaatctaacaaccaaggagttggagcggaggcaatgacgatccctagtaagcacaacagaagcagtgctctcctcac |
6513805 |
T |
|
| Q |
210 |
tgtctcattaaaagagtttctttctcagtgtctcaactctcacgatagcaaatcactgttnnnnnnnnnnnncttaaatttatttaggtaatagttattt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
6513804 |
tgtctcattaaaagagtttctttctcagtgtttcaactctcacgatagcaaatcactgttaaaaaaaaaaaacctaaatttatttaggtaatagttattt |
6513705 |
T |
|
| Q |
310 |
tttattgc |
317 |
Q |
| |
|
|||||||| |
|
|
| T |
6513704 |
tttattgc |
6513697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 32918369 - 32918287
Alignment:
| Q |
18 |
caacataattaaaaaataaaacatcgtaattaatagtagcaatgccaccattataaatccaacaacatttaacaagtctcaaa |
100 |
Q |
| |
|
|||||||||||| |||| | |||| |||||||||| | |||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32918369 |
caacataattaacaaatgtagcatcataattaatagcaataatgtgaccattataaatccaacaacattaaacaagtctcaaa |
32918287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University