View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_122 (Length: 315)
Name: NF1199_high_122
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_122 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 2242547 - 2242843
Alignment:
| Q |
1 |
ttctctaacaaagcagataattcaaagagtggtatgtgcaagttttcttagtttttatatgtcagtttgttaacactaagtttgctattgtgaatgttag |
100 |
Q |
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| T |
2242547 |
ttctctaacaaagcagataattcaaagagtggtatgtgcaagttttcttagtttttatatgtcagtttgttaacactaagtttgctattgtgaatgttag |
2242646 |
T |
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| Q |
101 |
ttctgctgttgctttgaatattgtggcatatgggaatcacatattctaaagacactagctggcttttcttgacatattggattaaatctcaacctacaat |
200 |
Q |
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| T |
2242647 |
ttctgctgttgctttgaatattgtggcatatgggaatcacatattctaaagacactagctggcttttcttgacatattggattaaatctcaacctacaat |
2242746 |
T |
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| Q |
201 |
gtaaacttctctaaacagtatagctgaccacttttattagggactttaataagagtgcgttgcttatttgcggctgattcgattgttctgtttgttt |
297 |
Q |
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| T |
2242747 |
gtaaacttctctaaacagtatagctgaccacttttattagggactgtaataagagtacgttgcttatttgcggctgattcgattgttctgtttgttt |
2242843 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 34860480 - 34860401
Alignment:
| Q |
96 |
gttagttctgctgttgctttgaatattgtggcatatgggaatcacatattctaaagacactagctggcttttcttgacat |
175 |
Q |
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|||||||||| |||| ||||||||||||||||| | || |||| ||||||||||| | |||||||||| |||||||| |
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| T |
34860480 |
gttagttctgttgttaatttgaatattgtggcatgtaagagtcacctattctaaagatattagctggcttgccttgacat |
34860401 |
T |
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