View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_high_123 (Length: 315)

Name: NF1199_high_123
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_high_123
NF1199_high_123
[»] chr3 (1 HSPs)
chr3 (29-315)||(53983003-53983289)


Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 29 - 315
Target Start/End: Complemental strand, 53983289 - 53983003
Alignment:
Q  29 accccgcccactacttgaaataccatcgtagatgcatttgttctttattttaattttaatatgatattataaaactttgctgtcgaaagcatacttgccc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53983289 accccgcccactacttgaaataccatcgtagatgcatttgttctttattttaattttaatatgatattataaaactttgctgtcgaaagcatacttgccc 53983190  T
Q  129 attgctgatgtgaatcttagataaacaaatgggattggagaggatataattttgatcaaaactccccctcttgaatgaataataatgggattttccatat 228  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53983189 attactgatgtgaatcttagataaacaaatgggattggagaggatataattttgatcaaaactccccctcttgaatgaataataatgggattttccatat 53983090  T
Q  229 caagggggagttgggcagaggtaatggatccgtgattggagcttcaaacttggagttgaatttcccaaattacattaagtctatgtg 315  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53983089 caagggggagttgggcagaggtaatggatccatgattggagcttcaaacttggagttgaatttcccaaattacattaagtctatgtg 53983003  T

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