View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_125 (Length: 311)
Name: NF1199_high_125
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_125 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 50 - 304
Target Start/End: Original strand, 8956658 - 8956912
Alignment:
| Q |
50 |
caaagtattcacaacccaccacacatggtacctatcaactctttcttctgcattagaaaatccacaactcacaaaatcaagcaataatctcaactctcta |
149 |
Q |
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| T |
8956658 |
caaagtattcacaacccaccacacatggtacctatcaactctttcctcagcattagaaaatccacaactcacaacatcaagcaataatctcaactctcta |
8956757 |
T |
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| Q |
150 |
ttttcttccaagttaatttacacctacacacatgtcatgaatggttttagtgctaatttatcaccaaaagaacatgaatccctcaaaacttcaccaggct |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8956758 |
ttttcttccaagttaatttacacctacacacatgtcatgaatggttttagtgctaatttatcaccaaaagaacatgaatccctcaaaacttcaccaggct |
8956857 |
T |
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| Q |
250 |
acatttcatccataaaagattcacacatgaaactcgacacaacacattcatctca |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8956858 |
acatttcatccataaaagattcacacatgaaactcgacacaacacattcacctca |
8956912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 8973195 - 8973262
Alignment:
| Q |
189 |
aatggttttagtgctaatttatcaccaaaagaacatgaatccctcaaaacttcaccaggctacatttc |
256 |
Q |
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| T |
8973195 |
aatggttttagtgctaatctatcacctgaagagcatgaagctctcaaaacttccccagggtacatttc |
8973262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 50 - 304
Target Start/End: Complemental strand, 34964180 - 34963929
Alignment:
| Q |
50 |
caaagtattcacaacccaccacacatggtacctatcaactctttcttctgcattagaaaatccacaactcacaaaatcaagcaataatctcaactctcta |
149 |
Q |
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| T |
34964180 |
caaagcattctcaactcatcacacatggtatcattccactctttcctctgcattagagaaccctcaactcacag---caaccaataatctcaactctcca |
34964084 |
T |
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| Q |
150 |
ttttcttccaagttaatttacacctacacacatgtcatgaatggttttagtgctaatttatcaccaaaagaacatgaatccctcaaaacttcaccaggct |
249 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| | |
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| T |
34964083 |
atttcttctaagttaatttacacctacacacatgtcataaatggttttagtgctaacttatcaccaaaagaacatgaatccctcaaaaatgcaccaggtt |
34963984 |
T |
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| Q |
250 |
acatttcatccataaaagattcacacatgaaactcgacacaacacattcatctca |
304 |
Q |
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|||||||||| |||| ||||| |||||||||| | ||||||||||||||| |||| |
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| T |
34963983 |
acatttcatctataagagatttacacatgaaaatggacacaacacattcacctca |
34963929 |
T |
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