View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_128 (Length: 307)
Name: NF1199_high_128
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_128 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 29 - 302
Target Start/End: Original strand, 6083409 - 6083682
Alignment:
| Q |
29 |
attagagtctgttgagaaggataatacttctctgatgtatgaggctcgagtgcttcaaaaggaacttgatattcgaaatgaagtccaattttcaagagta |
128 |
Q |
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| T |
6083409 |
attagagtctgttgagaaggataatacttctctgatgtatgaggctcgagtgcttcaaaaggaacttgatattcgaaatgaagtccaattttcaagagta |
6083508 |
T |
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| Q |
129 |
atgctttcgcaaacagcgtcaaaactgttgcaacttgaatctgagattgattccaaaaaccaagtagcatcggagcagcctagaagtcatgttgcattgc |
228 |
Q |
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| T |
6083509 |
atgctttcgcaaacagcgtcaaaactgttgcaacttgagtctgagattgattccaaaaaccaagtagcatcggagcagcctagaagtcatgttgcattgc |
6083608 |
T |
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| Q |
229 |
aagagttatctttggcatcaatgtcttacattggcagtgatgacaatgttagctgtggggagtcctttgcttct |
302 |
Q |
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| T |
6083609 |
aagagttatctttggcatcaatgtcttacattggcagtgatgacaatgttagctgcggggagtccttggcttct |
6083682 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 39107438 - 39107390
Alignment:
| Q |
237 |
tctttggcatcaatgtcttacattggcagtgatgacaatgttagctgtg |
285 |
Q |
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| T |
39107438 |
tctttggcatcaacgtctgatattggcagtgatgacaaggttagctgtg |
39107390 |
T |
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