View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_high_130 (Length: 302)

Name: NF1199_high_130
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_high_130
NF1199_high_130
[»] chr8 (7 HSPs)
chr8 (1-235)||(15348435-15348669)
chr8 (107-218)||(12199897-12200008)
chr8 (107-218)||(12444325-12444436)
chr8 (91-182)||(4032277-4032368)
chr8 (103-193)||(12194916-12195006)
chr8 (103-193)||(12439344-12439434)
chr8 (242-291)||(15272044-15272096)
[»] chr4 (36 HSPs)
chr4 (58-221)||(7770991-7771154)
chr4 (58-217)||(48170914-48171076)
chr4 (67-221)||(48735649-48735806)
chr4 (67-192)||(48862857-48862985)
chr4 (6-220)||(48870130-48870344)
chr4 (6-220)||(48885816-48886030)
chr4 (92-221)||(45372419-45372548)
chr4 (65-193)||(7789704-7789832)
chr4 (58-183)||(7904657-7904782)
chr4 (58-189)||(33134151-33134285)
chr4 (65-192)||(45366553-45366683)
chr4 (75-193)||(48891024-48891143)
chr4 (89-191)||(48156786-48156888)
chr4 (67-193)||(7822584-7822710)
chr4 (58-184)||(7877344-7877470)
chr4 (70-218)||(48148022-48148173)
chr4 (58-193)||(7238048-7238183)
chr4 (58-186)||(7774157-7774285)
chr4 (63-183)||(49041471-49041591)
chr4 (67-193)||(7800252-7800378)
chr4 (65-206)||(50668645-50668786)
chr4 (58-192)||(33133653-33133790)
chr4 (59-193)||(7765236-7765370)
chr4 (71-193)||(7813095-7813217)
chr4 (59-193)||(7786058-7786192)
chr4 (91-193)||(7907940-7908042)
chr4 (58-183)||(37827322-37827447)
chr4 (67-207)||(48875447-48875587)
chr4 (73-192)||(45385131-45385249)
chr4 (67-149)||(48852316-48852401)
chr4 (123-191)||(48902567-48902635)
chr4 (90-177)||(49044589-49044676)
chr4 (97-188)||(48898342-48898436)
chr4 (91-205)||(50251169-50251283)
chr4 (70-190)||(47207552-47207672)
chr4 (127-177)||(49048996-49049046)
[»] chr5 (6 HSPs)
chr5 (67-190)||(29712806-29712929)
chr5 (77-192)||(29695768-29695883)
chr5 (58-190)||(29687669-29687801)
chr5 (127-190)||(42562728-42562791)
chr5 (92-193)||(1812040-1812141)
chr5 (128-177)||(178650-178699)
[»] chr1 (5 HSPs)
chr1 (67-189)||(24309796-24309918)
chr1 (67-192)||(24340030-24340155)
chr1 (67-184)||(24322086-24322203)
chr1 (78-193)||(24366770-24366885)
chr1 (67-189)||(24415456-24415577)
[»] scaffold0508 (1 HSPs)
scaffold0508 (71-192)||(11878-11999)
[»] chr3 (5 HSPs)
chr3 (67-193)||(11024874-11025000)
chr3 (67-193)||(11015862-11015988)
chr3 (67-193)||(47452247-47452370)
chr3 (100-193)||(11006332-11006425)
chr3 (124-160)||(955615-955651)
[»] chr6 (3 HSPs)
chr6 (75-169)||(21979989-21980083)
chr6 (85-193)||(21015391-21015499)
chr6 (124-184)||(14193139-14193199)
[»] chr7 (1 HSPs)
chr7 (86-217)||(48883373-48883505)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 15348669 - 15348435
Alignment:
Q  1 agaagtagaatcatcatcaagcgatgttgctaaatctatagaatgaggtagatgacctatgcacaaaattctacgagtgtgtgttgcggcggtaatttga 100  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348669 agaagtagaataatcatcaagcgatgctgctaaatctatagaatgaggtagatgacctatgcacaaaattctacgagtgtgtgttgcggcggtaatttga 15348570  T
Q  101 aaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctctctagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15348569 aaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaacctctctagaa 15348470  T
Q  201 tttgaactattaattcatgagataggtaaggtagt 235  Q
    |||||||||||||||||||||| ||||||||||||    
T  15348469 tttgaactattaattcatgagacaggtaaggtagt 15348435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 12200008 - 12199897
Alignment:
Q  107 gaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctctctagaatttgaa 206  Q
    |||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||| || |||||| |||||||| ||||||   || |||||||    
T  12200008 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12199909  T
Q  207 ctattaattcat 218  Q
      ||||||||||    
T  12199908 tgattaattcat 12199897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 12444436 - 12444325
Alignment:
Q  107 gaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctctctagaatttgaa 206  Q
    |||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||| || |||||| |||||||| ||||||   || |||||||    
T  12444436 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12444337  T
Q  207 ctattaattcat 218  Q
      ||||||||||    
T  12444336 tgattaattcat 12444325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 4032277 - 4032368
Alignment:
Q  91 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttca 182  Q
    ||||||||||||||| |||||||| |||| ||||||||| |||||||  |||||||| |||||||| || ||||||||||||||||| ||||    
T  4032277 ggtaatttgaaaatgcgaatttgcaaagtgaggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagagacttca 4032368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 12195006 - 12194916
Alignment:
Q  103 atgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctc 193  Q
    |||||||||||| ||||  ||||||||||||||||| ||||| |||||||||| ||||||||||| || |||||| |||||||| ||||||    
T  12195006 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctc 12194916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 12439434 - 12439344
Alignment:
Q  103 atgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctc 193  Q
    |||||||||||| ||||  ||||||||||||||||| ||||| |||||||||| ||||||||||| || |||||| |||||||| ||||||    
T  12439434 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctc 12439344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 15272096 - 15272044
Alignment:
Q  242 tttttcttctcagtgcgcttactccctctgcgac---ggtttcttttcttcat 291  Q
    ||||||||||| ||||||||||||||||||||||   ||||||||||||||||    
T  15272096 tttttcttctctgtgcgcttactccctctgcgactttggtttcttttcttcat 15272044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 7771154 - 7770991
Alignment:
Q  58 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 157  Q
    |||||| |||| ||||| |||||||||||| | || || |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||    
T  7771154 tatgcataaaaatctacaagtgtgtgttgcagaggcaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacg 7771055  T
Q  158 catttgaaacgtataagagatttcaccggtaacctctctagaatttgaactattaattcatgag 221  Q
    |||||||||| ||||||||| |||||||| ||||||   |||||||| | ||||| ||||||||    
T  7771054 catttgaaacatataagagacttcaccggcaacctcatcagaatttggattattagttcatgag 7770991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 58 - 217
Target Start/End: Original strand, 48170914 - 48171076
Alignment:
Q  58 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaa 154  Q
    |||| ||| |||| ||||||||||||||  |||||||||||||||||| |||||||| |||| |||||||   |||||||||| ||||||||||||||||    
T  48170914 tatgaacataattttacgagtgtgtgtttaggcggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaa 48171013  T
Q  155 acgcatttgaaacgtataagagatttcaccggtaacctctctagaatttgaactattaattca 217  Q
    || ||||||||||||| |||||| ||||||| |||||||   |||||||||||||| ||||||    
T  48171014 acacatttgaaacgtagaagagacttcaccgataacctcagcagaatttgaactatcaattca 48171076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 48735649 - 48735806
Alignment:
Q  67 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaaacgcatttg 163  Q
    ||||||||||||||| |||  ||||||||||| ||||||||||||||| || | || ||||   ||||||||||||||||||||||||||||| ||||||    
T  48735649 aattctacgagtgtgggttatggcggtaatttcaaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatttg 48735748  T
Q  164 aaacgtataagagatttcaccggtaacctctctagaatttgaactattaattcatgag 221  Q
    ||||| |||||||| |||||||||||||||   |||||||||||||| || |||||||    
T  48735749 aaacgaataagagacttcaccggtaacctcagaagaatttgaactatcaactcatgag 48735806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 67 - 192
Target Start/End: Complemental strand, 48862985 - 48862857
Alignment:
Q  67 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaaacgcatttg 163  Q
    ||||||| | |||||||||||||| |||| |||||||||||||||||| |||| |||||||   ||||||||||||||||||||||| ||||||||||||    
T  48862985 aattctatgggtgtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttg 48862886  T
Q  164 aaacgtataagagatttcaccggtaacct 192  Q
    ||||| |||||||| ||||||||||||||    
T  48862885 aaacgaataagagacttcaccggtaacct 48862857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 48870344 - 48870130
Alignment:
Q  6 tagaatcatcatcaagcgatgttgctaaatctatagaatgaggtagatgacctatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatg 105  Q
    ||||||||| | ||||||||| | |||||||||||||| ||||  |  |    ||| ||| ||| |||||||||||||||||||| || |  ||||||||    
T  48870344 tagaatcataagcaagcgatgcttctaaatctatagaacgaggaggtggtgagatgaacagaatcctacgagtgtgtgttgcggctgtgagatgaaaatg 48870245  T
Q  106 tgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctctctagaatttga 205  Q
    ||||||||| ||    ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||   |||||||||    
T  48870244 tgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttga 48870145  T
Q  206 actattaattcatga 220  Q
    ||||| |||||||||    
T  48870144 actatcaattcatga 48870130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 48886030 - 48885816
Alignment:
Q  6 tagaatcatcatcaagcgatgttgctaaatctatagaatgaggtagatgacctatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatg 105  Q
    ||||||||| | ||||||||| | |||||||||||||| ||||  |  |    ||| ||| ||| |||||||||||||||||||| || |  ||||||||    
T  48886030 tagaatcataagcaagcgatgcttctaaatctatagaacgaggaggtggtgagatgaacagaatcctacgagtgtgtgttgcggctgtgagatgaaaatg 48885931  T
Q  106 tgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctctctagaatttga 205  Q
    ||||||||| ||    ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||   |||||||||    
T  48885930 tgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttga 48885831  T
Q  206 actattaattcatga 220  Q
    ||||| |||||||||    
T  48885830 actatcaattcatga 48885816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 92 - 221
Target Start/End: Original strand, 45372419 - 45372548
Alignment:
Q  92 gtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacc 191  Q
    ||||||||||||||||||||||| || | |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||    
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacc 45372518  T
Q  192 tctctagaatttgaactattaattcatgag 221  Q
    |   |||||||||||  || ||||||||||    
T  45372519 ttagtagaatttgaatcatcaattcatgag 45372548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 65 - 193
Target Start/End: Complemental strand, 7789832 - 7789704
Alignment:
Q  65 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttga 164  Q
    |||| ||||| |||||||||||||| || || |||||||||||||||| | |||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  7789832 aaaaatctacaagtgtgtgttgcggaggcaagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttga 7789733  T
Q  165 aacgtataagagatttcaccggtaacctc 193  Q
    ||| ||||||||| |||||||| ||||||    
T  7789732 aacatataagagacttcaccggcaacctc 7789704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 58 - 183
Target Start/End: Complemental strand, 7904782 - 7904657
Alignment:
Q  58 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 157  Q
    |||||||| ||||||| ||||||  | ||||||||| | |||||||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||     
T  7904782 tatgcacataattctaggagtgttagctgcggcggtgagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaaca 7904683  T
Q  158 catttgaaacgtataagagatttcac 183  Q
    |||||||||||||||||||| |||||    
T  7904682 catttgaaacgtataagagacttcac 7904657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 58 - 189
Target Start/End: Original strand, 33134151 - 33134285
Alignment:
Q  58 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaa 154  Q
    |||| ||| |||| ||| ||||||||||| |||||| |||||||||||||||||||| |||| |||||||   |||||||||||||| |||| |||||||    
T  33134151 tatgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaa 33134250  T
Q  155 acgcatttgaaacgtataagagatttcaccggtaa 189  Q
    |||||||||||||| |||||||| |||||||||||    
T  33134251 acgcatttgaaacgaataagagacttcaccggtaa 33134285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 65 - 192
Target Start/End: Original strand, 45366553 - 45366683
Alignment:
Q  65 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatc---agagataagagaaaaccaagacttacaaacgcatt 161  Q
    |||| ||||||||||||| ||||||||| || |||||||||||||||||| ||||  | |||   ||||||||||||||||||| ||||||||||||| |    
T  45366553 aaaactctacgagtgtgttttgcggcggaaagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcact 45366652  T
Q  162 tgaaacgtataagagatttcaccggtaacct 192  Q
    |||||||||||||||| ||||| ||||||||    
T  45366653 tgaaacgtataagagacttcactggtaacct 45366683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 193
Target Start/End: Complemental strand, 48891143 - 48891024
Alignment:
Q  75 gagtgtgtgttgcgg-cggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataa 173  Q
    |||||||||||| || |||||| ||||||||| |||||||| || | |||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  48891143 gagtgtgtgttgggggcggtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataa 48891044  T
Q  174 gagatttcaccggtaacctc 193  Q
    |||| || |||| |||||||    
T  48891043 gagactttaccgataacctc 48891024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 48156786 - 48156888
Alignment:
Q  89 gcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggta 188  Q
    ||||||||||||||||| |||||||| || | || ||| |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  48156786 gcggtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggta 48156885  T
Q  189 acc 191  Q
    |||    
T  48156886 acc 48156888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 193
Target Start/End: Complemental strand, 7822710 - 7822584
Alignment:
Q  67 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 166  Q
    |||||||||||| |||||||| | ||| | |||||| ||||||||||| ||||  ||||||||||||||||||||||| || |||||||| || ||||||    
T  7822710 aattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaa 7822611  T
Q  167 cgtataagagatttcaccggtaacctc 193  Q
    ||||||||| | |||||||| ||||||    
T  7822610 cgtataagatacttcaccggcaacctc 7822584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 184
Target Start/End: Complemental strand, 7877470 - 7877344
Alignment:
Q  58 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 157  Q
    |||||||| ||||||| ||||||| |||| || ||| | |||||||||||||||||| || |  |||||||||||||||||||||||   |||||||| |    
T  7877470 tatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatg 7877371  T
Q  158 catttgaaacgtataagagatttcacc 184  Q
    |||||||||||||||||||| ||||||    
T  7877370 catttgaaacgtataagagacttcacc 7877344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 70 - 218
Target Start/End: Original strand, 48148022 - 48148173
Alignment:
Q  70 tctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaaacgcatttgaaa 166  Q
    |||| |||||||| |||  ||||| | || |||||||||||||||||||| |||||||   |||||||||||||||||||||||||| || |||||||||    
T  48148022 tctatgagtgtgttttgaagcggtgagttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaa 48148121  T
Q  167 cgtataagagatttcaccggtaacctctctagaatttgaactattaattcat 218  Q
    || |||||||| ||||| ||||||||    || ||||||||||| |||||||    
T  48148122 cgaataagagacttcactggtaaccttgaaaggatttgaactatcaattcat 48148173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 193
Target Start/End: Original strand, 7238048 - 7238183
Alignment:
Q  58 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 157  Q
    |||||| ||||  |||||||| || ||||| | ||||  ||| |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||     
T  7238048 tatgcataaaaacctacgagtatgcgttgcagaggtatgttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaaca 7238147  T
Q  158 catttgaaacgtataagagatttcaccggtaacctc 193  Q
    ||||||||||  |||||||| ||||| || ||||||    
T  7238148 catttgaaacagataagagacttcactggcaacctc 7238183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 58 - 186
Target Start/End: Original strand, 7774157 - 7774285
Alignment:
Q  58 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 157  Q
    |||||||| ||||||| ||||||| |||| || ||| | |||||||||||||||||| || |  |||||||||||||||||||||||   |||||||||     
T  7774157 tatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaaca 7774256  T
Q  158 catttgaaacgtataagagatttcaccgg 186  Q
    ||||||||| | |||||||| ||||||||    
T  7774257 catttgaaatgaataagagacttcaccgg 7774285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 63 - 183
Target Start/End: Original strand, 49041471 - 49041591
Alignment:
Q  63 acaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcattt 162  Q
    |||||||||||||  |||| |||| || ||||| || |||||| |||||||| || |  ||||||||||||||||||||||||||||| |||||||||||    
T  49041471 acaaaattctacggttgtgggttgggggggtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcattt 49041570  T
Q  163 gaaacgtataagagatttcac 183  Q
    |||||  |||||||| |||||    
T  49041571 gaaacaaataagagacttcac 49041591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 193
Target Start/End: Complemental strand, 7800378 - 7800252
Alignment:
Q  67 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 166  Q
    |||||||||||| |||||||| | ||| | |||||| ||||||||||| |||   |||||||||| |||||||||||| || |||||||| || ||||||    
T  7800378 aattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaa 7800279  T
Q  167 cgtataagagatttcaccggtaacctc 193  Q
    ||||||||| | |||||||| ||||||    
T  7800278 cgtataagatacttcaccggcaacctc 7800252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 50668786 - 50668645
Alignment:
Q  65 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttga 164  Q
    ||||||||||||||||||| | |||| |||| || |||||| ||||| || || |   |||| ||||| |||||||||||||| ||||||||||| ||||    
T  50668786 aaaattctacgagtgtgtgattcggcagtaagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttga 50668687  T
Q  165 aacgtataagagatttcaccggtaacctctctagaatttgaa 206  Q
    ||||||||||| ||||||| || |||||| | | ||||||||    
T  50668686 aacgtataagatatttcacgggcaacctcaccaaaatttgaa 50668645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 58 - 192
Target Start/End: Complemental strand, 33133790 - 33133653
Alignment:
Q  58 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaa 154  Q
    |||| ||| |||| ||| ||||||||||| |||||| ||||||||||| |||||||| |||| | |||||   ||||||||||||||||||  |||||||    
T  33133790 tatgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgcgaatttgcaaagtgaagatcattagagataagagaaaaccaaagcttacaa 33133691  T
Q  155 acgcatttgaaacgtataagagatttcaccggtaacct 192  Q
    | | |||||||||| |||||||| ||||  ||||||||    
T  33133690 atgaatttgaaacgaataagagacttcattggtaacct 33133653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 193
Target Start/End: Complemental strand, 7765370 - 7765236
Alignment:
Q  59 atgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgc 158  Q
    ||||| |||| ||||||||||||| ||||   | ||| ||| |||||||||||||| |||| |||||||||||||| |||||||||  ||||||||| ||    
T  7765370 atgcataaaaatctacgagtgtgttttgcatggttaagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgc 7765271  T
Q  159 atttgaaacgtataagagatttcaccggtaacctc 193  Q
    | ||||||  ||  ||||| |||||||||||||||    
T  7765270 acttgaaaactaagagagacttcaccggtaacctc 7765236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 193
Target Start/End: Complemental strand, 7813217 - 7813095
Alignment:
Q  71 ctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgta 170  Q
    |||||||| |||||||| | ||| | |||||| ||||| ||||| ||||  || |||||||||||||||||||| || |||||||| || ||||||||||    
T  7813217 ctacgagtatgtgttgcagtggtgaattgaaattgtgactttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgta 7813118  T
Q  171 taagagatttcaccggtaacctc 193  Q
    ||||| | |||||||| ||||||    
T  7813117 taagatacttcaccggcaacctc 7813095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 193
Target Start/End: Complemental strand, 7786192 - 7786058
Alignment:
Q  59 atgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgc 158  Q
    ||||| |||| ||||||||||||| |||    | ||| ||| |||||||||||||| || | |||||||||||||| ||||| |||   |||||||||||    
T  7786192 atgcataaaaatctacgagtgtgttttgtaaggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgc 7786093  T
Q  159 atttgaaacgtataagagatttcaccggtaacctc 193  Q
    |||||||   |||||||||||||||||| ||||||    
T  7786092 atttgaacaatataagagatttcaccggcaacctc 7786058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 7908042 - 7907940
Alignment:
Q  91 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaac 190  Q
    ||||| |||||||||||||||||| || |  ||| ||||||||||||||||||| ||||||| |||  | ||||||||| ||||||| |||||||| |||    
T  7908042 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaac 7907943  T
Q  191 ctc 193  Q
    |||    
T  7907942 ctc 7907940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 183
Target Start/End: Original strand, 37827322 - 37827447
Alignment:
Q  58 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 157  Q
    |||| ||| ||||| |||||| |||| || ||| |||| |||||||||||||||||| ||||  |||| ||| |||||||  ||||| ||||||||||||    
T  37827322 tatgaacagaattcgacgagtttgtgctgtggccgtaagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacg 37827421  T
Q  158 catttgaaacgtataagagatttcac 183  Q
    ||| | |||| ||||||||| |||||    
T  37827422 catgtaaaacttataagagacttcac 37827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 207
Target Start/End: Complemental strand, 48875587 - 48875447
Alignment:
Q  67 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 166  Q
    |||||||||||   ||||||| ||||| | |||||||||||||||||  || |  || || ||||| ||||||||||||||||| |||||||||||||||    
T  48875587 aattctacgagacggtgttgccgcggtgagttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaa 48875488  T
Q  167 cgtataagagatttcaccggtaacctctctagaatttgaac 207  Q
    || || ||||| || || | |||||||   |||||||||||    
T  48875487 cgaattagagacttgactgataacctcagcagaatttgaac 48875447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 73 - 192
Target Start/End: Original strand, 45385131 - 45385249
Alignment:
Q  73 acgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtata 172  Q
    ||||| |||||||| ||||| || |||||| ||||||| ||| ||||  | ||| ||||  |||||||||||||||||||||||| |||||||||||||     
T  45385131 acgagggtgtgttgtggcggaaagttgaaa-tgtgaatatgcaaagtgggtatcggagacgagagaaaaccaagacttacaaacggatttgaaacgtatg 45385229  T
Q  173 agagatttcaccggtaacct 192  Q
    ||||| || || ||||||||    
T  45385230 agagacttaactggtaacct 45385249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 48852401 - 48852316
Alignment:
Q  67 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaagga---tcagagataagagaaaaccaagact 149  Q
    |||||||||||||||||||| ||| ||||||| |||||| |||||||| |||| ||||   | |||||||||||||||||||||||    
T  48852401 aattctacgagtgtgtgttgaggcagtaatttcaaaatgcgaatttgcaaagtgaggattgtgagagataagagaaaaccaagact 48852316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 48902635 - 48902567
Alignment:
Q  123 gatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacc 191  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||| || ||||| || ||||| ||||    
T  48902635 gatcagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaacc 48902567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 49044589 - 49044676
Alignment:
Q  90 cggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 177  Q
    ||||||||| ||||||||||||||| ||||  |  | ||||||||||||||||||  |||||||||| || |||||||||| ||||||    
T  49044589 cggtaatttcaaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagaga 49044676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 48898436 - 48898342
Alignment:
Q  97 ttgaaaatgtgaatttgcgaagtaaggatc---agagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggta 188  Q
    |||||||||||||||||| ||||  | |||   ||||||||| || ||||||||||||||||| || ||||||||| ||||||| ||||| ||||    
T  48898436 ttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggta 48898342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 205
Target Start/End: Original strand, 50251169 - 50251283
Alignment:
Q  91 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaac 190  Q
    ||||| |||||||||  |||||||  |||  |||||||||||||||||||||||||||||| |||| || || ||  |||||||||  ||||| || |||    
T  50251169 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacccactttaattgtataagagccttcactggcaac 50251268  T
Q  191 ctctctagaatttga 205  Q
    ||  ||| |||||||    
T  50251269 ctaactaaaatttga 50251283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 190
Target Start/End: Complemental strand, 47207672 - 47207552
Alignment:
Q  70 tctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgt 169  Q
    |||| |||||||||||  || ||||| || |||||||||||| |  || |  || || ||||| |||||||| |||||||| ||||| |  || ||||||    
T  47207672 tctatgagtgtgtgttttggtggtaagttcaaaatgtgaattagaaaaatgtgggtcggagatgagagaaaatcaagacttccaaacactcttaaaacgt 47207573  T
Q  170 ataagagatttcaccggtaac 190  Q
    |||||||| ||||||||||||    
T  47207572 ataagagacttcaccggtaac 47207552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 49048996 - 49049046
Alignment:
Q  127 agagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 177  Q
    ||||||||||||||||||  |||||||||| || |||||||||| ||||||    
T  49048996 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagaga 49049046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 67 - 190
Target Start/End: Original strand, 29712806 - 29712929
Alignment:
Q  67 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 166  Q
    ||||||| ||| |||||||  |||||||| ||||||||||||||||||||| | ||  | ||||||||||||||||||  ||||||||||||| ||||||    
T  29712806 aattctaggagcgtgtgttttggcggtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 29712905  T
Q  167 cgtataagagatttcaccggtaac 190  Q
    || |||||||| ||||||||||||    
T  29712906 cgaataagagacttcaccggtaac 29712929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 192
Target Start/End: Complemental strand, 29695883 - 29695768
Alignment:
Q  77 gtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagag 176  Q
    |||||||| |||| ||||| |||||||||||||||||| |||| ||| | ||| |||||||| |||||  |||||||||||||||||||||| |||||||    
T  29695883 gtgtgtgtagcggtggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaacgaataagag 29695784  T
Q  177 atttcaccggtaacct 192  Q
    | || || ||||||||    
T  29695783 acttgactggtaacct 29695768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 190
Target Start/End: Complemental strand, 29687801 - 29687669
Alignment:
Q  58 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 157  Q
    |||| ||| ||||||| |||||||||    |||||||| ||||||||| |||||||| |||| ||| | ||| || |||||||||||||||||||||||     
T  29687801 tatgaacagaattctaggagtgtgtgcattggcggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaaca 29687702  T
Q  158 catttgaaacgtataagagatttcaccggtaac 190  Q
    || ||||| ||||||||||| ||||| ||||||    
T  29687701 cacttgaagcgtataagagacttcactggtaac 29687669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 42562728 - 42562791
Alignment:
Q  127 agagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaac 190  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  42562728 agagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaac 42562791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 193
Target Start/End: Complemental strand, 1812141 - 1812040
Alignment:
Q  92 gtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacc 191  Q
    |||| |||||||||  ||||||| ||||  ||||  |||||||||||||||||  |||||||||| |||||| ||||||| ||| | ||||| |||||||    
T  1812141 gtaagttgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacc 1812042  T
Q  192 tc 193  Q
    ||    
T  1812041 tc 1812040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 178699 - 178650
Alignment:
Q  128 gagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 177  Q
    ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagaga 178650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 24309918 - 24309796
Alignment:
Q  67 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 166  Q
    ||||||||| ||||||||||  |  |||| |||||||||||||||||| |||| || |||||||||||||||||||||  ||||||||||| ||||||||    
T  24309918 aattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaa 24309819  T
Q  167 cgtataagagatttcaccggtaa 189  Q
    || |||||||| || ||||||||    
T  24309818 cgaataagagacttaaccggtaa 24309796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 67 - 192
Target Start/End: Complemental strand, 24340155 - 24340030
Alignment:
Q  67 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 166  Q
    ||||||| ||||||||||||| || |||| |||||| ||||||||||| |||| |  |||||||||||| |||||||| |||||||||||  ||||||||    
T  24340155 aattctaagagtgtgtgttgcagcagtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaa 24340056  T
Q  167 cgtataagagatttcaccggtaacct 192  Q
    || |||||||| || |||||||||||    
T  24340055 cgaataagagacttaaccggtaacct 24340030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 184
Target Start/End: Complemental strand, 24322203 - 24322086
Alignment:
Q  67 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 166  Q
    ||||| ||||||||||||||| || ||| |  |||| ||||||||||| ||   |||||  |||||||||||||||||||||||||||||||||||||||    
T  24322203 aattcgacgagtgtgtgttgcagcagtattcagaaactgtgaatttgcaaaacgaggatttgagataagagaaaaccaagacttacaaacgcatttgaaa 24322104  T
Q  167 cgtataagagatttcacc 184  Q
    || |||||||| ||||||    
T  24322103 cgaataagagacttcacc 24322086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 24366885 - 24366770
Alignment:
Q  78 tgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 177  Q
    |||||||||| || ||||| ||||| ||||||||||| ||||||||||  ||||||||||||||||| ||||| ||||| ||||||||||| || ||||     
T  24366885 tgtgtgttgcagcagtaatctgaaactgtgaatttgcaaagtaaggatttgagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagagt 24366786  T
Q  178 tttcaccggtaacctc 193  Q
    ||  || |||||||||    
T  24366785 ttcaactggtaacctc 24366770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 24415577 - 24415456
Alignment:
Q  67 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 166  Q
    ||||| ||||||||||||||| || ||||| ||||| ||||||||||| ||    ||||  || |||||||||||||||||||||| |||||||||||||    
T  24415577 aattcgacgagtgtgtgttgcagcagtaatctgaaactgtgaatttgcaaaact-ggatttgaaataagagaaaaccaagacttacgaacgcatttgaaa 24415479  T
Q  167 cgtataagagatttcaccggtaa 189  Q
    || |||||||| || ||||||||    
T  24415478 cgaataagagacttaaccggtaa 24415456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 71 - 192
Target Start/End: Complemental strand, 11999 - 11878
Alignment:
Q  71 ctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgta 170  Q
    ||||||||||||||||  |  |||| |||||||||||||||||| |||| |  ||||||||||||||||||||| |||||||||||| |||||||||| |    
T  11999 ctacgagtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacgga 11900  T
Q  171 taagagatttcaccggtaacct 192  Q
    ||||||| || | |||||||||    
T  11899 taagagacttaatcggtaacct 11878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 67 - 193
Target Start/End: Original strand, 11024874 - 11025000
Alignment:
Q  67 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 166  Q
    |||||||  |||||||||||| | || || || |||||| || ||||| |||| | |||||||||||||||  ||||| |||||||||||||||||||||    
T  11024874 aattctattagtgtgtgttgcaggggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaa 11024973  T
Q  167 cgtataagagatttcaccggtaacctc 193  Q
    ||||| ||||| |||||||||||||||    
T  11024974 cgtatgagagacttcaccggtaacctc 11025000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 193
Target Start/End: Original strand, 11015862 - 11015988
Alignment:
Q  67 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 166  Q
    |||||||  |||||||||||| | || || || |||||| || ||||| |||| | |||||||||||||||  ||| | |||||||||||||||||||||    
T  11015862 aattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaacaatgacttacaaacgcatttgaaa 11015961  T
Q  167 cgtataagagatttcaccggtaacctc 193  Q
    ||||| ||||| |||||||||||||||    
T  11015962 cgtatgagagacttcaccggtaacctc 11015988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 193
Target Start/End: Original strand, 47452247 - 47452370
Alignment:
Q  67 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 166  Q
    |||||||||||||||||   ||||||||| || ||||||||  ||||| |||  |||||||||||||||||||||||| |||||| ||| ||| |||||     
T  47452247 aattctacgagtgtgtg---cggcggtaagttcaaaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaag 47452343  T
Q  167 cgtataagagatttcaccggtaacctc 193  Q
    |||| |||||| |||||||| ||||||    
T  47452344 cgtacaagagacttcaccggcaacctc 47452370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 11006332 - 11006425
Alignment:
Q  100 aaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctc 193  Q
    |||||| || ||||| |||| |||||||||||||||||  ||||| ||||||||||| || |||||||||||||| || |||||||| ||||||    
T  11006332 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctc 11006425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 955651 - 955615
Alignment:
Q  124 atcagagataagagaaaaccaagacttacaaacgcat 160  Q
    ||||||||||||||||  |||||||||||||||||||    
T  955651 atcagagataagagaattccaagacttacaaacgcat 955615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 21979989 - 21980083
Alignment:
Q  75 gagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgt 169  Q
    |||||||||||||||||| ||  | |||||||||||| || ||||  |||| |||||| ||||||||||||||||||||||| || |||||||||    
T  21979989 gagtgtgtgttgcggcggcaagatcaaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgt 21980083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 21015499 - 21015391
Alignment:
Q  85 tgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcacc 184  Q
    |||||| ||||||| |||||||||| |||| ||||  |  | |||||||||||||||| |  |||||||||| || |||||||||| ||||||  | |||    
T  21015499 tgcggcagtaatttcaaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgacc 21015400  T
Q  185 ggtaacctc 193  Q
    |||||||||    
T  21015399 ggtaacctc 21015391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 14193139 - 14193199
Alignment:
Q  124 atcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcacc 184  Q
    |||| |||||||||||| |||| |||||||||| |||||||||| ||  ||||| ||||||    
T  14193139 atcaaagataagagaaagccaaaacttacaaacacatttgaaacctaagagagacttcacc 14193199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 217
Target Start/End: Complemental strand, 48883505 - 48883373
Alignment:
Q  86 gcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgca---tttgaaacgtataagagatttca 182  Q
    ||||| |||| ||||||||| || ||||||||||  | || |||||  ||||||||||||| ||||||||| ||   ||||||||||| |||||| ||||    
T  48883505 gcggctgtaagttgaaaatgggattttgcgaagttggtatgagaga--agagaaaaccaaggcttacaaacacattttttgaaacgtaaaagagacttca 48883408  T
Q  183 ccggtaacctctctagaatttgaactattaattca 217  Q
    |  |||||||| | | ||||||||  |||||||||    
T  48883407 catgtaacctcaccaaaatttgaatgattaattca 48883373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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