View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_139 (Length: 290)
Name: NF1199_high_139
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_139 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 39286249 - 39286022
Alignment:
| Q |
19 |
cagggtgttggcaaaaatctatataaatccacaatataactagcaagttgaaatcaattcaaattaaacattgaaatcaaataacagtagtgaaagctgg |
118 |
Q |
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| T |
39286249 |
cagggtgttggcaaaaatctatataaatccacaatataactagcaagttgaaatcaattcaaattaaacattgaaatcaaataacagtagtgaaagctgg |
39286150 |
T |
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| Q |
119 |
taggtgcagctttcacgtaaagaaaatagtaatactctatttacaatattaaaccaataagcatatataattcaataggaatatttaacacttgagatac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39286149 |
taggtgcagctttcacgtaaagaaaatagtaatactctatttacaatattaaaccaataagcatatataattcaataggaatatttaacacttgagatac |
39286050 |
T |
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| Q |
219 |
tgttggtggtgtttcaagcactgctaac |
246 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
39286049 |
tgttggtggtgtttcaagcactgctaac |
39286022 |
T |
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