View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_high_154 (Length: 257)

Name: NF1199_high_154
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_high_154
NF1199_high_154
[»] chr1 (7 HSPs)
chr1 (30-257)||(6513211-6513438)
chr1 (33-112)||(6521343-6521422)
chr1 (33-112)||(6507313-6507392)
chr1 (33-101)||(6517613-6517681)
chr1 (142-185)||(6507424-6507467)
chr1 (151-239)||(6517696-6517785)
chr1 (155-184)||(6521306-6521335)
[»] scaffold0341 (4 HSPs)
scaffold0341 (33-112)||(1338-1417)
scaffold0341 (33-112)||(8992-9071)
scaffold0341 (142-185)||(1449-1492)
scaffold0341 (142-185)||(9105-9148)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 6513211 - 6513438
Alignment:
Q  30 gaaagaacaaagaaatgaagacattgtataacaaataacagacaataattatggatgtttgaagcattaaaatgtggaatgagnnnnnnnnnnnnnnnnn 129  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||                     
T  6513211 gaaagaacaaagaaatgaagacattgtttaagaaataacagacaataattatggatgtttgaagcattaaaatgtggaatgagttttattttatttattt 6513310  T
Q  130 nnnnnnncaaggagaatgagctttcattgaaaaagaatttggccggctatagattcagctattgctagcttttaaaactattcgaccaaaatttcgcctt 229  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||| | ||    
T  6513311 tttattacaaggagaatgagctttcattgaaaaagaatttggccggctatagattcgactattgctagcttttaaaactattcaaccaaaatttcacttt 6513410  T
Q  230 cgtttttatacaactacataaacactta 257  Q
    ||||||||||||||||||||||||||||    
T  6513411 cgtttttatacaactacataaacactta 6513438  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 6521422 - 6521343
Alignment:
Q  33 agaacaaagaaatgaagacattgtataacaaataacagacaataattatggatgtttgaagcattaaaatgtggaatgag 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||    
T  6521422 agaacaaagaaatgaagacattgtataacaaataacaaacaataattatggatgtttcaagctttaaaatgtggaatgag 6521343  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 6507313 - 6507392
Alignment:
Q  33 agaacaaagaaatgaagacattgtataacaaataacagacaataattatggatgtttgaagcattaaaatgtggaatgag 112  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| |||||||||||||||||    
T  6507313 agaacaaagaaatgaagacattgtataacaaataacacacaacaattatggatgtttcaagctttaaaatgtggaatgag 6507392  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 6517613 - 6517681
Alignment:
Q  33 agaacaaagaaatgaagacattgtataacaaataacagacaataattatggatgtttgaagcattaaaa 101  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| |||| ||||||    
T  6517613 agaacaaagaaatgaagacattgtttaacaaataacaaacaataattattgatgtttcaagctttaaaa 6517681  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 6507424 - 6507467
Alignment:
Q  142 agaatgagctttcattgaaaaagaatttggccggctatagattc 185  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  6507424 agaatgagctttcattgagaaagaatttggccggctatagattc 6507467  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 6517696 - 6517785
Alignment:
Q  151 tttcattgaaaaagaatttggccggctatagattcagctattgctagcttttaaaactattcg-accaaaatttcgccttcgtttttata 239  Q
    ||||||| ||||| |||||||||||||||| ||||  || ||||||| ||||||||||||| | | ||||||||| | ||| ||||||||    
T  6517696 tttcattaaaaaataatttggccggctatatattcgtctgttgctagtttttaaaactatttgaaacaaaatttcactttcctttttata 6517785  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 184
Target Start/End: Complemental strand, 6521335 - 6521306
Alignment:
Q  155 attgaaaaagaatttggccggctatagatt 184  Q
    ||||||||||||||||||||||||||||||    
T  6521335 attgaaaaagaatttggccggctatagatt 6521306  T

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Target: scaffold0341 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 1338 - 1417
Alignment:
Q  33 agaacaaagaaatgaagacattgtataacaaataacagacaataattatggatgtttgaagcattaaaatgtggaatgag 112  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| |||||||||||||||||    
T  1338 agaacaaagaaatgaagacattgtataacaaataacacacaacaattatggatgtttcaagctttaaaatgtggaatgag 1417  T

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Target: scaffold0341; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 8992 - 9071
Alignment:
Q  33 agaacaaagaaatgaagacattgtataacaaataacagacaataattatggatgtttgaagcattaaaatgtggaatgag 112  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| |||||||||||||||||    
T  8992 agaacaaagaaatgaagacattgtataacaaataacacacaacaattatggatgtttcaagctttaaaatgtggaatgag 9071  T

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Target: scaffold0341; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 1449 - 1492
Alignment:
Q  142 agaatgagctttcattgaaaaagaatttggccggctatagattc 185  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  1449 agaatgagctttcattgagaaagaatttggccggctatagattc 1492  T

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Target: scaffold0341; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 9105 - 9148
Alignment:
Q  142 agaatgagctttcattgaaaaagaatttggccggctatagattc 185  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  9105 agaatgagctttcattgagaaagaatttggccggctatagattc 9148  T

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