View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1199_high_16 (Length: 625)
Name: NF1199_high_16
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 103 - 621
Target Start/End: Original strand, 4856840 - 4857367
Alignment:
| Q |
103 |
agacggaacttggccacttaattcaaactaacaaatttttaatccttgtcactaacatacgattgtccttttatactacaagtctaccattacaagctgt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4856840 |
agacggaacttggccacttaattcaaactaacaaatttttaacccttgtcactaacatacgattgtccttttatactacaagtctaccattacaagctgt |
4856939 |
T |
|
| Q |
203 |
accttttggtcatttctcctatatagcgtccttgtcttatcctcttggtacttaacataaccttttatttctcatactacaatgattggggatagctcat |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4856940 |
accttttggtcatttctcctatatagcgtccttgtcttatcctcttggtacttaacaaaaccttttatttctcatactacaatgattggggataggtcat |
4857039 |
T |
|
| Q |
303 |
cgaacttagcccctaagaaacgacaacccataaacatctccagactcttcctagcgatgcatctccatacattgcaggactcctttccaacttt------ |
396 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4857040 |
cgaacttagcctctaagaaacgacaacccataaacatctccagactcttcctagcgatgcatctccatacattgctggactcctttccaacttttatctt |
4857139 |
T |
|
| Q |
397 |
--tctaaccgtagcaaatcttcaacatgttcgagagaataaccaaaacaagcattactagtttaatattgctaattaaatttttaatttcctaaatagtc |
494 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4857140 |
cgtataaccgtagcaaatcttcaacatgttcgagagaataaccaaaacaagcattactaatttaatattgctaattaaatttttaatttcctaaatagtc |
4857239 |
T |
|
| Q |
495 |
actaattagatgttgtaggtcatacaatcagtcaatttatcatagaatatagaggataaatgtaaa-taataaccaacaattttgtcggttatcttttag |
593 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4857240 |
actaattagatgttataggtcatacaatcagttaatttatcatagaatatagaggataaatgtaaagtaataaccaacaattttgtcggttatcttttag |
4857339 |
T |
|
| Q |
594 |
atgcactaacattacagaattatctacc |
621 |
Q |
| |
|
|||||||||||||| ||| ||| ||||| |
|
|
| T |
4857340 |
atgcactaacattatagagttagctacc |
4857367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 170 - 317
Target Start/End: Original strand, 33662354 - 33662502
Alignment:
| Q |
170 |
cttttatactacaagtcta-ccattacaagctgtaccttttggtcatttctcctatatagcgtccttgtcttatcctcttggtacttaacataacctttt |
268 |
Q |
| |
|
|||||||| |||||||| | ||| |||||| ||| || |||||| ||||||||||| | ||||||||||| |||| |||||||| ||||| ||||| |
|
|
| T |
33662354 |
cttttatagtacaagtccaaccactacaagttgtgccctttggtaatttctcctatgaggtgtccttgtcttgtccttttggtactcaacattttctttt |
33662453 |
T |
|
| Q |
269 |
atttctcatactacaatgattggggatagctcatcgaacttagccccta |
317 |
Q |
| |
|
||| ||||||||||||||||||| || | || ||| ||||||||||||| |
|
|
| T |
33662454 |
attcctcatactacaatgattggagacatcttatcaaacttagccccta |
33662502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 170 - 317
Target Start/End: Original strand, 33667720 - 33667868
Alignment:
| Q |
170 |
cttttatactacaagtcta-ccattacaagctgtaccttttggtcatttctcctatatagcgtccttgtcttatcctcttggtacttaacataacctttt |
268 |
Q |
| |
|
|||||||| |||||||| | ||| |||||| ||| || |||||| ||||| ||||| ||||||||||||||| |||| |||||| ||||| ||||| |
|
|
| T |
33667720 |
cttttatagtacaagtccaaccactacaagttgtgccctttggtaatttcacctatgaggcgtccttgtcttatactctcggtactcaacattttctttt |
33667819 |
T |
|
| Q |
269 |
atttctcatactacaatgattggggatagctcatcgaacttagccccta |
317 |
Q |
| |
|
||| || |||||| ||||||||| || | || ||| ||||||||||||| |
|
|
| T |
33667820 |
attcctgatactagaatgattggagacatcttatcaaacttagccccta |
33667868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 482 - 532
Target Start/End: Complemental strand, 15243910 - 15243860
Alignment:
| Q |
482 |
ttcctaaatagtcactaattagatgttgtaggtcatacaatcagtcaattt |
532 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||| || ||| ||||||| |
|
|
| T |
15243910 |
ttcctaaatagtcactgattagatgttttaggtcatgcattcactcaattt |
15243860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 317
Target Start/End: Original strand, 33661104 - 33661197
Alignment:
| Q |
230 |
gtccttgtcttatcctcttggtacttaacataaccttttat------ttctcatactacaatgattggggatagctcatcgaacttagccccta |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||| | | ||||||||||||||| || |||| ||||||||||||||||| |
|
|
| T |
33661104 |
gtccttgtcttatcctcttggtactcaacatattcttttatcccgcgtggccgtactacaatgattggagagagcttatcgaacttagccccta |
33661197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 33661003 - 33661036
Alignment:
| Q |
108 |
gaacttggccacttaattcaaactaacaaatttt |
141 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
33661003 |
gaacttggccactcaattcaaactaacaaatttt |
33661036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 309
Target Start/End: Complemental strand, 42525611 - 42525531
Alignment:
| Q |
229 |
cgtccttgtcttatcctcttggtacttaacataaccttttatttctcatactacaatgattggggatagctcatcgaactt |
309 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||| ||||||||||||| ||| |||| | ||| |||||||| |
|
|
| T |
42525611 |
cgtccttgtcttatcctcttggtactcaacatattcttttattcctcatactacaatcattagggacatctcgtcgaactt |
42525531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 482 - 587
Target Start/End: Original strand, 15608333 - 15608439
Alignment:
| Q |
482 |
ttcctaaatagtcactaattagatgttgtaggtcatacaatcagtcaatttatcatagaatatagaggataaatgtaa-ataataaccaacaattttgtc |
580 |
Q |
| |
|
|||||||||||||| | |||||||| | | ||||| |||||| ||||||| ||||||| |||||||||||| || || ||||||||| |||| ||| || |
|
|
| T |
15608333 |
ttcctaaatagtcaattattagatgctacatgtcatgcaatcactcaatttctcatagattatagaggataagtgcaatataataacctacaagtttatc |
15608432 |
T |
|
| Q |
581 |
ggttatc |
587 |
Q |
| |
|
||||||| |
|
|
| T |
15608433 |
ggttatc |
15608439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 30500369 - 30500264
Alignment:
| Q |
146 |
ccttgtcactaacatacgattgtccttttatactacaagtcta-ccattacaagctgtaccttttggtcatttctcctatatagcgtccttgtcttatcc |
244 |
Q |
| |
|
||||| |||||||||| | ||||||||||| | |||||| | | |||| ||||| |||||| ||||||||||||| | ||| |||| |||||||||| |
|
|
| T |
30500369 |
ccttgacactaacatatggttgtccttttaaaatacaagcccaaccatgacaagttgtaccctttggtcatttcttccataagatgtccatgtcttatcc |
30500270 |
T |
|
| Q |
245 |
tcttgg |
250 |
Q |
| |
|
|||||| |
|
|
| T |
30500269 |
tcttgg |
30500264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 152 - 243
Target Start/End: Original strand, 26572937 - 26573029
Alignment:
| Q |
152 |
cactaacatacgattgtccttttatactacaagtcta-ccattacaagctgtaccttttggtcatttctcctatatagcgtccttgtcttatc |
243 |
Q |
| |
|
||||||||| |||| |||||||||| |||||| ||| ||| |||||| |||||| |||| ||||||| ||||| | |||||||||||||| |
|
|
| T |
26572937 |
cactaacatgtgattttccttttatagtacaaggctagccactacaagttgtaccctttgatcatttcccctattaattgtccttgtcttatc |
26573029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University