View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_160 (Length: 251)
Name: NF1199_high_160
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_160 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 45 - 243
Target Start/End: Complemental strand, 41486043 - 41485845
Alignment:
| Q |
45 |
atgctcttctaaatcctccaaaaatctggtggaggtgaaactggagagactggagaagtgatggatgcactattaactgatccatatccaaccatagact |
144 |
Q |
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| T |
41486043 |
atgctcttctaaatcctccaaaaatctggtggtggtgaaactggagagactggagaagtgatggatgcactattaactgatccatatccaaccacagact |
41485944 |
T |
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| Q |
145 |
gatctccataaaatgccaatttcgtccataatttcttctcgatatggtacatttcagctatatcaccatcgtcatccataagctgctctatttcatctc |
243 |
Q |
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| T |
41485943 |
gatctccataaaatgccaatttcgtccataatttcttctcgatatggtacatttcagctatatcaccatcgtcatccataagctgctctatttcatctc |
41485845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 141
Target Start/End: Complemental strand, 41482951 - 41482811
Alignment:
| Q |
3 |
tcagaactcctcatgctctcgtgttgattcctagcaacactcatgctcttctaaatcctccaaaaatctggtggaggtgaaactggagagactggagaag |
102 |
Q |
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| T |
41482951 |
tcagatctcctcatgatctcgtgttgattcctagcaatgctcaacctcttctaaagcttccgagaatcaggtggggatgaaacgagagagactggagaag |
41482852 |
T |
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| Q |
103 |
tgatggatgcactattaactgatc--catatccaaccatag |
141 |
Q |
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| T |
41482851 |
agaaggatgcaccatcaactgatctatatatccaaccatag |
41482811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 41482809 - 41482744
Alignment:
| Q |
178 |
tcttctcgatatggtacatttcagctatatcaccatcgtcatccataagctgctctatttcatctc |
243 |
Q |
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| T |
41482809 |
tcttctcgataaggtacatttcagccatatcaccatcatcatccgtaagctattctatttcgtctc |
41482744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 45384833 - 45385079
Alignment:
| Q |
3 |
tcagaactcctcatgctctcgtgttgattcctagcaacactcatgctcttctaaatcctccaaaaat------ctggtggaggtgaaactggagagactg |
96 |
Q |
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| T |
45384833 |
tcagaactcctcatgctctcgtgtcgactcctagcaatgctcaagctcttctcaagcctccgagagtgagagtcgggtggtgatgaaacaggagagactg |
45384932 |
T |
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| Q |
97 |
gagaagtgatggatgcactattaactgatccatatccaaccatagactgatctccataaaatgccaatttcgtccataatttcttctcgatatggtacat |
196 |
Q |
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| T |
45384933 |
gaagagagatggatgcaccatcaaccggtctatatccaaccatagactgatctccataaaatgacaattccattcgtcttttcttctcggtaaggtacat |
45385032 |
T |
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| Q |
197 |
ttcagctatatcaccatcgtcatccataagctgctctatttcatctc |
243 |
Q |
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| T |
45385033 |
ttcagccatatcaccatcatcatccataagctgctctatttcgtctc |
45385079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 5796133 - 5796212
Alignment:
| Q |
80 |
tgaaactggagagactggagaagtgatggatgcactattaactgatccatatccaaccatagactgatctccataaaatg |
159 |
Q |
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| T |
5796133 |
tgaaacgggagagactggataaaagatggatgtgtcatcaactggtctatatccaaccagagactgatctccataaaatg |
5796212 |
T |
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