View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_high_162 (Length: 251)

Name: NF1199_high_162
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_high_162
NF1199_high_162
[»] chr8 (20 HSPs)
chr8 (1-219)||(30021362-30021593)
chr8 (139-238)||(41160288-41160387)
chr8 (139-232)||(43749252-43749345)
chr8 (139-235)||(13169741-13169837)
chr8 (138-224)||(14123884-14123970)
chr8 (139-221)||(38805664-38805745)
chr8 (179-231)||(2377982-2378034)
chr8 (179-238)||(4594830-4594889)
chr8 (179-237)||(14118035-14118094)
chr8 (179-238)||(23615942-23616001)
chr8 (179-238)||(30591610-30591669)
chr8 (179-238)||(30886831-30886890)
chr8 (179-238)||(34740363-34740422)
chr8 (179-238)||(34852940-34852999)
chr8 (179-238)||(31961495-31961554)
chr8 (179-224)||(26759000-26759045)
chr8 (180-237)||(28153956-28154013)
chr8 (19-67)||(43749038-43749086)
chr8 (180-225)||(45263767-45263812)
chr8 (180-236)||(30273172-30273228)
[»] chr7 (18 HSPs)
chr7 (139-238)||(38599676-38599775)
chr7 (139-230)||(7792350-7792441)
chr7 (139-224)||(33618148-33618233)
chr7 (139-238)||(21146413-21146512)
chr7 (179-238)||(25676098-25676157)
chr7 (179-238)||(37467834-37467893)
chr7 (179-224)||(12847516-12847561)
chr7 (179-232)||(18927345-18927398)
chr7 (179-238)||(522809-522868)
chr7 (179-234)||(4580655-4580710)
chr7 (180-233)||(314108-314161)
chr7 (155-204)||(39296237-39296286)
chr7 (155-204)||(39297938-39297987)
chr7 (179-238)||(32813296-32813355)
chr7 (179-233)||(45300867-45300921)
chr7 (180-217)||(2791557-2791594)
chr7 (180-225)||(7495205-7495250)
chr7 (180-224)||(32542435-32542479)
[»] chr2 (25 HSPs)
chr2 (139-238)||(5617291-5617390)
chr2 (139-238)||(38285996-38286095)
chr2 (139-238)||(43871391-43871490)
chr2 (139-224)||(9171571-9171656)
chr2 (139-238)||(42554046-42554145)
chr2 (180-232)||(32092694-32092746)
chr2 (179-238)||(11709716-11709775)
chr2 (179-238)||(12371435-12371494)
chr2 (179-238)||(35467143-35467202)
chr2 (179-238)||(35852327-35852386)
chr2 (179-238)||(37425844-37425903)
chr2 (179-238)||(42453645-42453704)
chr2 (180-237)||(31920736-31920793)
chr2 (179-224)||(45325973-45326018)
chr2 (179-237)||(9305175-9305233)
chr2 (179-224)||(41760032-41760077)
chr2 (19-71)||(5617190-5617242)
chr2 (19-71)||(36213323-36213375)
chr2 (180-235)||(27247443-27247498)
chr2 (186-224)||(5962316-5962354)
chr2 (180-238)||(34041223-34041280)
chr2 (156-198)||(37486609-37486651)
chr2 (185-238)||(88935-88987)
chr2 (19-64)||(39272051-39272096)
chr2 (19-63)||(39272090-39272134)
[»] chr3 (22 HSPs)
chr3 (141-238)||(21452959-21453056)
chr3 (141-238)||(21458133-21458230)
chr3 (139-234)||(51390463-51390558)
chr3 (139-224)||(18365547-18365632)
chr3 (179-232)||(45691587-45691640)
chr3 (179-238)||(14503-14562)
chr3 (179-238)||(19286565-19286624)
chr3 (179-238)||(21912548-21912607)
chr3 (179-238)||(33050126-33050185)
chr3 (179-238)||(40997529-40997588)
chr3 (179-238)||(41949937-41949996)
chr3 (179-238)||(50901363-50901422)
chr3 (19-71)||(18365446-18365498)
chr3 (179-238)||(5410147-5410206)
chr3 (180-224)||(54768370-54768414)
chr3 (183-230)||(5962170-5962217)
chr3 (180-238)||(27263344-27263402)
chr3 (182-224)||(34848116-34848158)
chr3 (17-67)||(51390611-51390661)
chr3 (179-224)||(33987557-33987602)
chr3 (139-184)||(35367264-35367309)
chr3 (192-224)||(104726-104758)
[»] chr5 (18 HSPs)
chr5 (139-238)||(17391150-17391251)
chr5 (179-232)||(7015404-7015457)
chr5 (140-238)||(25595438-25595541)
chr5 (179-238)||(670839-670898)
chr5 (179-238)||(2849126-2849185)
chr5 (179-238)||(15295931-15295990)
chr5 (179-238)||(30985393-30985452)
chr5 (179-238)||(35858324-35858383)
chr5 (155-224)||(17815825-17815894)
chr5 (179-232)||(41308430-41308483)
chr5 (179-238)||(10646866-10646925)
chr5 (179-238)||(21119237-21119296)
chr5 (180-238)||(19265207-19265265)
chr5 (179-238)||(25104583-25104642)
chr5 (179-238)||(25163676-25163735)
chr5 (155-238)||(17820435-17820518)
chr5 (184-224)||(7711318-7711358)
chr5 (180-224)||(17815497-17815541)
[»] chr4 (13 HSPs)
chr4 (139-238)||(3075469-3075568)
chr4 (144-229)||(1757362-1757447)
chr4 (139-238)||(19914815-19914913)
chr4 (179-224)||(16325464-16325509)
chr4 (179-232)||(20254373-20254426)
chr4 (179-238)||(26497345-26497404)
chr4 (179-238)||(36665865-36665924)
chr4 (179-238)||(49316216-49316275)
chr4 (179-238)||(49965275-49965334)
chr4 (179-238)||(3146347-3146406)
chr4 (179-238)||(34150963-34151022)
chr4 (180-238)||(30548156-30548214)
chr4 (27-71)||(3075376-3075420)
[»] chr1 (12 HSPs)
chr1 (141-231)||(52869037-52869126)
chr1 (179-232)||(41444723-41444776)
chr1 (179-233)||(25700213-25700267)
chr1 (179-237)||(50581064-50581122)
chr1 (179-238)||(14544521-14544580)
chr1 (180-230)||(17306480-17306530)
chr1 (179-232)||(33112511-33112564)
chr1 (179-232)||(43055818-43055871)
chr1 (160-229)||(48175383-48175452)
chr1 (179-238)||(33113262-33113322)
chr1 (19-71)||(43637542-43637592)
chr1 (179-223)||(22582401-22582444)
[»] chr6 (12 HSPs)
chr6 (179-238)||(5059458-5059517)
chr6 (179-238)||(10839832-10839891)
chr6 (179-238)||(25085942-25086001)
chr6 (179-238)||(29918682-29918741)
chr6 (179-238)||(30599243-30599302)
chr6 (179-234)||(2525392-2525447)
chr6 (179-238)||(34782714-34782773)
chr6 (179-238)||(5272086-5272146)
chr6 (179-233)||(5173082-5173136)
chr6 (180-229)||(17508507-17508556)
chr6 (185-238)||(25510160-25510211)
chr6 (185-238)||(26046539-26046590)
[»] scaffold0024 (1 HSPs)
scaffold0024 (179-235)||(92907-92963)
[»] scaffold0365 (1 HSPs)
scaffold0365 (179-238)||(342-401)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 30021362 - 30021593
Alignment:
Q  1 atattatttttgtagcaattttatttcatactattaacaacttttcattgtaacaacttttattactacttacctnnnnnnnnn----cttttattactg 96  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||             ||||||||| |     
T  30021362 atattatttttgtaacaattttatttcatactattaacaacttttcattgtaacaacttttattattacttttctaaaaaaaaaaagacttttattatta 30021461  T
Q  97 cttgcaacaccccaattattaattcaatgtttcattgtcaac---------ttatcgattacattgctattgtttcattactttattatccttatttaat 187  Q
    ||||||||||||  ||||||||||||||||| ||||||  |          ||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  30021462 cttgcaacacccttattattaattcaatgttccattgtttatatcgtattgttatcgattacattgttattgtttcgttactttattatccttatttaat 30021561  T
Q  188 taagtttaagggtaaaacagtaaaataatttt 219  Q
    ||||||||||||||||||||||||||||||||    
T  30021562 taagtttaagggtaaaacagtaaaataatttt 30021593  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 41160288 - 41160387
Alignment:
Q  139 ttatcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||   |||||||||||    
T  41160288 ttatcgattacatcgttattgtttcattactttattatccttatttaattaagtttaaaggtaaatcagtaaaatcattttaaaatatttcccctcccct 41160387  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 43749252 - 43749345
Alignment:
Q  139 ttatcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccc 232  Q
    |||||| |||||| | ||||||||| ||||||||||||| |||||||||||||||||||||||||| | ||||||||||| ||||||| |||||    
T  43749252 ttatcggttacatcgttattgtttcgttactttattatctttatttaattaagtttaagggtaaaaaaataaaataatttaaaaattcttcccc 43749345  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 13169741 - 13169837
Alignment:
Q  139 ttatcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcc 235  Q
    |||||||||||||   ||||||||  |||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||| | ||||||||||    
T  13169741 ttatcgattacatcattattgttttgttactttattatccttatttaattaagtttaatggtaaaatagtaaattaattttaaagtccctcccctcc 13169837  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 14123884 - 14123970
Alignment:
Q  138 cttatcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaat 224  Q
    |||||||||||||| |  |||||||| ||||||| |||||||||||||||||||  ||||| |||||| ||||||||||||||||||    
T  14123884 cttatcgattacatcgtgattgtttcgttactttgttatccttatttaattaagcctaaggataaaactgtaaaataattttaaaat 14123970  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 38805745 - 38805664
Alignment:
Q  139 ttatcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaa 221  Q
    ||||||||||||| | | ||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||    
T  38805745 ttatcgattacatcgttgttgtttcgttactttattaaccttatttaattaagttcaagggtaaaacagt-aaataattttaa 38805664  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 2378034 - 2377982
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctccc 231  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  2378034 ttatttaattaagtttaagggtaaaacggtaaaataattttaaaatccctccc 2377982  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 4594889 - 4594830
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  4594889 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 4594830  T

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Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 14118094 - 14118035
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctc-ccctcccc 237  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||    
T  14118094 ttatttaattaagtttaagggtaaaacggtaaaataattttaaaatccctctccctcccc 14118035  T

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Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 23615942 - 23616001
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  23615942 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 23616001  T

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Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 30591610 - 30591669
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  30591610 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 30591669  T

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Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 30886890 - 30886831
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  30886890 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 30886831  T

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Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 34740422 - 34740363
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||| |||||||||||||    
T  34740422 ttatttaattaagtttaagggtaaaatggtaaaataattataaaatccctcccctcccct 34740363  T

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Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 34852940 - 34852999
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  34852940 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 34852999  T

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Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 31961495 - 31961554
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | |||||||  ||||||||||||    
T  31961495 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatctctcccctcccct 31961554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 26759000 - 26759045
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaat 224  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||    
T  26759000 ttatttaattaagtttaagggttaaacggtaaaataattttaaaat 26759045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 28154013 - 28153956
Alignment:
Q  180 tatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccc 237  Q
    ||||||||||||||||| | || ||| |||||||| ||||||||| ||||||||||||    
T  28154013 tatttaattaagtttaaagatagaactgtaaaatagttttaaaatccctcccctcccc 28153956  T

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Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 43749038 - 43749086
Alignment:
Q  19 ttttatttcatactattaacaacttttcattgtaacaacttttattact 67  Q
    ||||||| |||| ||||||||| |||||||||||||||| |||||||||    
T  43749038 ttttattccatattattaacaatttttcattgtaacaacgtttattact 43749086  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 45263812 - 45263767
Alignment:
Q  180 tatttaattaagtttaagggtaaaacagtaaaataattttaaaatt 225  Q
    |||| |||||||||||||  |||||||||||| |||||||||||||    
T  45263812 tattcaattaagtttaagaataaaacagtaaattaattttaaaatt 45263767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 30273228 - 30273172
Alignment:
Q  180 tatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctccc 236  Q
    ||||||||||||||||| | ||||| |||||| ||||||| ||||  ||||||||||    
T  30273228 tatttaattaagtttaaagataaaatagtaaattaattttgaaatctctcccctccc 30273172  T

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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 38599775 - 38599676
Alignment:
Q  139 ttatcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||| | ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38599775 ttatcgattacatcgttattgtttcgttactttattattcttatttaattaagtttaagggtaaaacagtaaaataattttaaaatacctcccctcccct 38599676  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 7792350 - 7792441
Alignment:
Q  139 ttatcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcc 230  Q
    |||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  7792350 ttattgattacatcgttattgtttcgttactttattatccttatttaattaagtttaagggtaaaacagtaaaataatcttaaaatccctcc 7792441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 33618233 - 33618148
Alignment:
Q  139 ttatcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaat 224  Q
    ||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  33618233 ttatcgattacatcgttattgtttctttactttattatccttatttaattaagtttaagagtaaaacagtaaaataatattaaaat 33618148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 21146413 - 21146512
Alignment:
Q  139 ttatcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||| | ||||||||  |||||||||||| |||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||||||||    
T  21146413 ttatcgattacatcgttattgttttgttactttattattcttattcaattaagtttaaggataaaatagtaaaataattttaaaattcatcccctcccct 21146512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 25676157 - 25676098
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||  ||||||| ||||    
T  25676157 ttatttaattaagtttaagggtaaaacggtaaaataattttaaaatatctcccctaccct 25676098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 37467893 - 37467834
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  37467893 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 37467834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 12847561 - 12847516
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaat 224  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  12847561 ttatttaattaagtttaagggtaaaacggtaaaataattttaaaat 12847516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 18927398 - 18927345
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccc 232  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| |||||||    
T  18927398 ttatttaattaagtttaagtgtgaaacagtaaaataattttaaaatccctcccc 18927345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 522809 - 522868
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||| ||||||||| |||||||| | ||||||| |||||||||||||    
T  522809 ttatttaattaagtttaggggtaaaacggtaaaatactgttaaaatccctcccctcccct 522868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 4580710 - 4580655
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctc 234  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||    
T  4580710 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctc 4580655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 314161 - 314108
Alignment:
Q  180 tatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccct 233  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||  |||||||    
T  314161 tatttaattaagtttaagggtaaaacaataaattaattttaaaatctctcccct 314108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 39296237 - 39296286
Alignment:
Q  155 tattgtttcattactttattatccttatttaattaagtttaagggtaaaa 204  Q
    ||||| |||||||||||||||||||||| ||||||||||||| |||||||    
T  39296237 tattgcttcattactttattatccttatctaattaagtttaaaggtaaaa 39296286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 39297938 - 39297987
Alignment:
Q  155 tattgtttcattactttattatccttatttaattaagtttaagggtaaaa 204  Q
    |||||||||||||||||||||||||||| ||||||||||||  |||||||    
T  39297938 tattgtttcattactttattatccttatctaattaagtttagaggtaaaa 39297987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 32813296 - 32813355
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||| ||||||  |||||||| | ||||||| |||||||||||||    
T  32813296 ttatttaattaagtttaagtgtaaaatggtaaaatactgttaaaatccctcccctcccct 32813355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 45300867 - 45300921
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccct 233  Q
    ||||||||||||||||||||||||||| ||||||||   ||||||| ||||||||    
T  45300867 ttatttaattaagtttaagggtaaaacggtaaaatacagttaaaatccctcccct 45300921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 2791594 - 2791557
Alignment:
Q  180 tatttaattaagtttaagggtaaaacagtaaaataatt 217  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  2791594 tatttaattaagtttaagggtaaaaaagtaaattaatt 2791557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 7495250 - 7495205
Alignment:
Q  180 tatttaattaagtttaagggtaaaacagtaaaataattttaaaatt 225  Q
    ||||||||||||||||||| |||||  ||||| |||||||||||||    
T  7495250 tatttaattaagtttaaggttaaaattgtaaattaattttaaaatt 7495205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 32542435 - 32542479
Alignment:
Q  180 tatttaattaagtttaagggtaaaacagtaaaataattttaaaat 224  Q
    ||||||||||||||||||||||||| | |||| | ||||||||||    
T  32542435 tatttaattaagtttaagggtaaaatattaaattgattttaaaat 32542479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 5617291 - 5617390
Alignment:
Q  139 ttatcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||| | ||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  5617291 ttatcgattacatcgttatcgttttattactttattatccttatttaattaaatttaagggtaaaacagtaaaataattttaaaatacctcccctcccct 5617390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 38285996 - 38286095
Alignment:
Q  139 ttatcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||    
T  38285996 ttatcgattacattgttaatgtttcgttactttattatccttatttaattaagtttaagagtaaaatagtaaaataatttcaaaattcctcccctcccct 38286095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 43871391 - 43871490
Alignment:
Q  139 ttatcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    |||| |||||||| | ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  43871391 ttatagattacatcgttattgtttcgttgctttattatccttatttaattaagtttaagggtaaaacagtaaaataattataaaatccctcccctcccct 43871490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 9171571 - 9171656
Alignment:
Q  139 ttatcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaat 224  Q
    ||||| ||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9171571 ttatccattacatcgttattgtttcgttactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaat 9171656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 42554046 - 42554145
Alignment:
Q  139 ttatcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||| | |||||| || ||||| |||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |||||||||||    
T  42554046 ttatcgattacatcgttattgtctcgttactctattatccttatttaattaactttaagggtaaaatagtaaaatgattttaaaattcgtcccctcccct 42554145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 32092746 - 32092694
Alignment:
Q  180 tatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32092746 tatttaattaagtttaagggtaaaacagtaaaataattttaaaatccctcccc 32092694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 11709716 - 11709775
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  11709716 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 11709775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 12371494 - 12371435
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  12371494 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 12371435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 35467143 - 35467202
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    |||||||||||||||||||||||||| ||||||||| | ||||||| |||||||||||||    
T  35467143 ttatttaattaagtttaagggtaaaatagtaaaatactgttaaaatccctcccctcccct 35467202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 35852386 - 35852327
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  35852386 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 35852327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 37425903 - 37425844
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  37425903 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 37425844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 42453645 - 42453704
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  42453645 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 42453704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 31920736 - 31920793
Alignment:
Q  180 tatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccc 237  Q
    ||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||    
T  31920736 tatttaattaaatttaagggtaaaactgtaaaatagttttaaaatccctcccctcccc 31920793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 45326018 - 45325973
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaat 224  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  45326018 ttatttaattaagtttaagggtaaaacggtaaaataattttaaaat 45325973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 9305175 - 9305233
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccc 237  Q
    ||||||||||||||||||||||||||  |||||||| | ||||||| ||||||||||||    
T  9305175 ttatttaattaagtttaagggtaaaatggtaaaatactgttaaaatccctcccctcccc 9305233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 41760032 - 41760077
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaat 224  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||    
T  41760032 ttatttaattaagtttaaggataaaacggtaaaataattttaaaat 41760077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 5617190 - 5617242
Alignment:
Q  19 ttttatttcatactattaacaacttttcattgtaacaacttttattactactt 71  Q
    |||||||||||| ||||||||| ||||| |||||||||||||||| |||||||    
T  5617190 ttttatttcatattattaacaatttttccttgtaacaacttttatcactactt 5617242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 36213323 - 36213375
Alignment:
Q  19 ttttatttcatactattaacaacttttcattgtaacaacttttattactactt 71  Q
    |||||||||||| ||||||||||||||| | |||||||||||||||| |||||    
T  36213323 ttttatttcatattattaacaacttttcctcgtaacaacttttattattactt 36213375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 27247443 - 27247498
Alignment:
Q  180 tatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcc 235  Q
    ||||||||||||||||| | |||||||||||| |||||| ||||||| ||||||||    
T  27247443 tatttaattaagtttaatgataaaacagtaaattaatttaaaaattcatcccctcc 27247498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 5962316 - 5962354
Alignment:
Q  186 attaagtttaagggtaaaacagtaaaataattttaaaat 224  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  5962316 attaagtttaagggtaaaatagtaaattaattttaaaat 5962354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 34041280 - 34041223
Alignment:
Q  180 tatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||| |||| ||||| |||||||| ||| ||||| |||||||    
T  34041280 tatttaattaagtttaagggt-aaaccgtaaattaattttagaatccctccactcccct 34041223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 37486609 - 37486651
Alignment:
Q  156 attgtttcattactttattatccttatttaattaagtttaagg 198  Q
    |||||||  |||||||||||||| |||||||||||||||||||    
T  37486609 attgttttgttactttattatccatatttaattaagtttaagg 37486651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 88935 - 88987
Alignment:
Q  185 aattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    |||||||||||||||||||| |||||| ||||||||||||  ||||| ||||||    
T  88935 aattaagtttaagggtaaaa-agtaaattaattttaaaatctctcccttcccct 88987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 39272051 - 39272096
Alignment:
Q  19 ttttatttcatactattaacaacttttcattgtaacaacttttatt 64  Q
    |||||||||||| ||||||||||||| | ||| |||||||||||||    
T  39272051 ttttatttcatattattaacaactttcccttgcaacaacttttatt 39272096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 39272090 - 39272134
Alignment:
Q  19 ttttatttcatactattaacaacttttcattgtaacaacttttat 63  Q
    |||||||||||| ||||||||||||| | ||| ||||||||||||    
T  39272090 ttttatttcatattattaacaactttcccttgcaacaacttttat 39272134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 21453056 - 21452959
Alignment:
Q  141 atcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||| | |||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  21453056 atcgattacatcgttattatttcgttactttattatccttatttaattaagtttaagggtaaaacattaaaataattttaaaatccctcccctcccct 21452959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 21458230 - 21458133
Alignment:
Q  141 atcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||| | |||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  21458230 atcgattacatcgttattatttcgttactttattatccttatttaattaagtttaagggtaaaacattaaaataattttaaaatccctcccctcccct 21458133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 51390558 - 51390463
Alignment:
Q  139 ttatcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctc 234  Q
    ||||||||||||| |  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  51390558 ttatcgattacatcgtcattgtttcgttactttattatccttatttaattaagtttaagggtaaaacagtaaaatagttttaaaatttctcccctc 51390463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 18365547 - 18365632
Alignment:
Q  139 ttatcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaat 224  Q
    |||| |||||||||| |||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18365547 ttatggattacattgttattttttcgttactttattatccttattcaattaagtttaagggtaaaacagtaaaataattttaaaat 18365632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 45691640 - 45691587
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccc 232  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  45691640 ttatttaattaagtttaagggtaaaacggtaaaataattttaaaatccctcccc 45691587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 14562 - 14503
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  14562 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 14503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 19286565 - 19286624
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  19286565 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 19286624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 21912607 - 21912548
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  21912607 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 21912548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 33050126 - 33050185
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  33050126 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 33050185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 40997529 - 40997588
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  40997529 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 40997588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 41949996 - 41949937
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  41949996 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 41949937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 50901422 - 50901363
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  50901422 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 50901363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 18365446 - 18365498
Alignment:
Q  19 ttttatttcatactattaacaacttttcattgtaacaacttttattactactt 71  Q
    ||||||| |||| ||||||||||||||| ||||||||||||||||||||||||    
T  18365446 ttttattccatattattaacaacttttctttgtaacaacttttattactactt 18365498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 5410147 - 5410206
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| ||||||||| || |||||  ||||||||||||    
T  5410147 ttatttaattaagtttaagggtaaaacggtaaaataaattaaaaatctctcccctcccct 5410206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 54768414 - 54768370
Alignment:
Q  180 tatttaattaagtttaagggtaaaacagtaaaataattttaaaat 224  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||    
T  54768414 tatttaattaagtttaagggtaaaacaataaattaattttaaaat 54768370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 5962217 - 5962170
Alignment:
Q  183 ttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcc 230  Q
    |||||||||||| |||||||||||||||| |||||||||||| |||||    
T  5962217 ttaattaagtttgagggtaaaacagtaaattaattttaaaatccctcc 5962170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 27263402 - 27263344
Alignment:
Q  180 tatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||| ||||||||||||||| | |||||| |||||||||||| |||||| ||||||    
T  27263402 tatttaagtaagtttaagggtaagatagtaaattaattttaaaatccctcccttcccct 27263344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 34848158 - 34848116
Alignment:
Q  182 tttaattaagtttaagggtaaaacagtaaaataattttaaaat 224  Q
    |||||||||||| |||||||||||| |||| ||||||||||||    
T  34848158 tttaattaagttaaagggtaaaacaataaactaattttaaaat 34848116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 51390661 - 51390611
Alignment:
Q  17 aattttatttcatactattaacaacttttcattgtaacaacttttattact 67  Q
    ||||||||| |||| ||||||||| ||||| || |||||||||||||||||    
T  51390661 aattttattccatattattaacaatttttccttataacaacttttattact 51390611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 33987602 - 33987557
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaat 224  Q
    |||||||| ||| ||||| |||||||||||||| ||||||||||||    
T  33987602 ttatttaactaaatttaaaggtaaaacagtaaattaattttaaaat 33987557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 35367264 - 35367309
Alignment:
Q  139 ttatcgattacattgctattgtttcattactttattatccttattt 184  Q
    ||||||||||||| | |||||||||||||||||||| | |||||||    
T  35367264 ttatcgattacatcgttattgtttcattactttattcttcttattt 35367309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 104758 - 104726
Alignment:
Q  192 tttaagggtaaaacagtaaaataattttaaaat 224  Q
    ||||||||||||| |||||||||||||||||||    
T  104758 tttaagggtaaaaaagtaaaataattttaaaat 104726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 17391251 - 17391150
Alignment:
Q  139 ttatcgattacatt-gctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcc-tcccctccc 236  Q
    |||||||||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| || |||||||||    
T  17391251 ttatcgattacattcgttattgtttcattactttattatccttaattatttaagtttaagggtaaaacagtaaaataattttaaaatcccttcccctccc 17391152  T
Q  237 ct 238  Q
    ||    
T  17391151 ct 17391150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 7015404 - 7015457
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccc 232  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7015404 ttatttaattaagtttaagggttaaacagtaaaataattttaaaattcctcccc 7015457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 25595438 - 25595541
Alignment:
Q  140 tatcgattacattgctattgtttcattactttattatccttatttaatt-----aagtttaagggtaaaacagtaaaataattttaaaattcctcccctc 234  Q
    |||||||||||| | ||||||||| ||||| ||||||||||||||||||     ||||||||| |||||||| |||| ||||||||||||| |||| |||    
T  25595438 tatcgattacatcgttattgtttctttactctattatccttatttaatttaaccaagtttaagcgtaaaacaataaattaattttaaaatttctcctctc 25595537  T
Q  235 ccct 238  Q
    ||||    
T  25595538 ccct 25595541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 670839 - 670898
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  670839 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 670898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 2849185 - 2849126
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  2849185 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 2849126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 15295931 - 15295990
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  15295931 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 15295990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 30985393 - 30985452
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  30985393 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 30985452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 35858383 - 35858324
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  35858383 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 35858324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 17815894 - 17815825
Alignment:
Q  155 tattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaat 224  Q
    ||||||||| ||| |||||||| |||| | |||||||||||||||||||||| |||| ||||||||||||    
T  17815894 tattgtttcgttattttattatacttaatcaattaagtttaagggtaaaacaataaattaattttaaaat 17815825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 41308430 - 41308483
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccc 232  Q
    ||||||||||||||||||||||||||  |||||||||||||||||| |||||||    
T  41308430 ttatttaattaagtttaagggtaaaatggtaaaataattttaaaatacctcccc 41308483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 10646866 - 10646925
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||| ||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  10646866 ttatttaatgaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 10646925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 21119296 - 21119237
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||  |||||||| | ||||||| |||||||||||||    
T  21119296 ttatttaattaagtttaagggtaaaatggtaaaatactgttaaaatccctcccctcccct 21119237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 19265265 - 19265207
Alignment:
Q  180 tatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||| ||| | |||||||||| ||||||||||||||||||| ||||||    
T  19265265 tatttaattaagtttgaggtttaaacagtaaattaattttaaaattcctcccttcccct 19265207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 25104642 - 25104583
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    |||||||||||||||||||||||||||  |||| |||||| ||||| |||||||| ||||    
T  25104642 ttatttaattaagtttaagggtaaaacgttaaagtaatttaaaaatccctccccttccct 25104583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 25163735 - 25163676
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    |||||||||||||||||||||||||||  |||| |||||| ||||| |||||||| ||||    
T  25163735 ttatttaattaagtttaagggtaaaacgttaaagtaatttaaaaatccctccccttccct 25163676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 17820518 - 17820435
Alignment:
Q  155 tattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||| || ||||| ||| |||| |||| |||||||||| |||||||| | || |||||||||||| | | |||||||||    
T  17820518 tattgtttcgtttctttactattcttaattaagtaagtttaagagtaaaacaattaattaattttaaaatccattccctcccct 17820435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 7711358 - 7711318
Alignment:
Q  184 taattaagtttaagggtaaaacagtaaaataattttaaaat 224  Q
    ||||| |||||||||||||||| ||||| ||||||||||||    
T  7711358 taatttagtttaagggtaaaacggtaaattaattttaaaat 7711318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 17815497 - 17815541
Alignment:
Q  180 tatttaattaagtttaagggtaaaacagtaaaataattttaaaat 224  Q
    ||||||||||||||||||| ||||||| |||| | ||||||||||    
T  17815497 tatttaattaagtttaaggttaaaacaataaatttattttaaaat 17815541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 3075469 - 3075568
Alignment:
Q  139 ttatcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    |||||||||||||   |||| |||| |||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||  ||||||||||||    
T  3075469 ttatcgattacatcattattatttcgttactttattatccttatttgattaagtttaagggtaaaatagtaaactaattttaaaatctctcccctcccct 3075568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 1757362 - 1757447
Alignment:
Q  144 gattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctc 229  Q
    |||||||| | ||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||    
T  1757362 gattacatcgttattgtttcgttagtttattatccttattttattaagtttaagggtaaaacagtaaattaattttaaaatccctc 1757447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 19914815 - 19914913
Alignment:
Q  139 ttatcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||| ||||| | ||||||||| ||| |||||||| |||||||| |||||||||||||||||| |||||||| ||||||||||  ||||||||||||    
T  19914815 ttatcgactacatcgttattgtttcgttaatttattattcttattta-ttaagtttaagggtaaaagagtaaaatcattttaaaatctctcccctcccct 19914913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 16325509 - 16325464
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaat 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  16325509 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaat 16325464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 20254426 - 20254373
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccc 232  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  20254426 ttatttaattaagtttaaggataaaacagtaaaataattttaaaatccctcccc 20254373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 26497345 - 26497404
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  26497345 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 26497404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 36665924 - 36665865
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  36665924 ttatttaattaagtttaagggtaaaacggtaaaatattgttaaaatccctcccctcccct 36665865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 49316275 - 49316216
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  49316275 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 49316216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 49965334 - 49965275
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  49965334 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 49965275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 3146406 - 3146347
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    |||||||||||||||||||| |||||| |||||||| | ||||||| |||||||||||||    
T  3146406 ttatttaattaagtttaaggataaaacggtaaaatactgttaaaatccctcccctcccct 3146347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 34150963 - 34151022
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||| ||||||||    
T  34150963 ttatttaattaagtttaagggtaaaacggtaaaatattgttaaaatccctcacctcccct 34151022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 30548214 - 30548156
Alignment:
Q  180 tatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||| |||||||||||| ||||||||||||| |||||||||| || ||||||| ||||    
T  30548214 tatttgattaagtttaagagtaaaacagtaaattaattttaaactttctccccttccct 30548156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 3075376 - 3075420
Alignment:
Q  27 catactattaacaacttttcattgtaacaacttttattactactt 71  Q
    |||| ||||||||||||||  ||||||||| ||||||||||||||    
T  3075376 catattattaacaactttttcttgtaacaaattttattactactt 3075420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 52869126 - 52869037
Alignment:
Q  141 atcgattacattgctattgtttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctccc 231  Q
    |||||||||||   ||||||||| ||||||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||| ||||||    
T  52869126 atcgattacatcattattgtttcgttactttattatctttatttaattaagtttaagggt-aaacaataaaataatttttaaatccctccc 52869037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 41444776 - 41444723
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccc 232  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  41444776 ttatttaattaagtttaagggtaaaacggtaaaataattttaaaatccctcccc 41444723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 25700213 - 25700267
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccct 233  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||    
T  25700213 ttatttaattaagtttaagagtaaaacggtaaaataattttaaaatccctcccct 25700267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 50581064 - 50581122
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccc 237  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| ||||||||||||    
T  50581064 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccc 50581122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 14544521 - 14544580
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | |||||||  ||||||||||||    
T  14544521 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatctctcccctcccct 14544580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 17306530 - 17306480
Alignment:
Q  180 tatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcc 230  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  17306530 tatttaattaagtttaagggtaaaacagtaatttaattttaaaactcctcc 17306480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 33112564 - 33112511
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccc 232  Q
    |||||||||||||||||||| |||||  |||||||||||||||||| |||||||    
T  33112564 ttatttaattaagtttaaggataaaatggtaaaataattttaaaatccctcccc 33112511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 43055818 - 43055871
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccc 232  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||    
T  43055818 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccc 43055871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 48175452 - 48175383
Alignment:
Q  160 tttcattactttattatccttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctc 229  Q
    |||| ||||||||||||| ||||| || ||| ||||||| ||||| | ||||||||||||||||| ||||    
T  48175452 tttcgttactttattatctttattgaaataaatttaaggataaaataataaaataattttaaaatccctc 48175383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 33113262 - 33113322
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaat-tcctcccctcccct 238  Q
    |||||||||||| |||| ||||||||  |||||||||||||||||| || |||||||||||    
T  33113262 ttatttaattaaatttatgggtaaaatggtaaaataattttaaaatctcttcccctcccct 33113322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 43637592 - 43637542
Alignment:
Q  19 ttttatttcatactattaacaacttttcattgtaacaacttttattactactt 71  Q
    |||||||||||| ||||||||| |||||   ||||||||||||||||||||||    
T  43637592 ttttatttcatattattaacaatttttcc--gtaacaacttttattactactt 43637542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 22582444 - 22582401
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaa 223  Q
    |||||||||||| ||||| |||||||||||||| |||||||||||    
T  22582444 ttatttaattaa-tttaaaggtaaaacagtaaattaattttaaaa 22582401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 5059517 - 5059458
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  5059517 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 5059458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 10839832 - 10839891
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  10839832 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 10839891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 25086001 - 25085942
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  25086001 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 25085942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 29918741 - 29918682
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  29918741 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 29918682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 30599243 - 30599302
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  30599243 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcccct 30599302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 2525392 - 2525447
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctc 234  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||    
T  2525392 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctc 2525447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 34782773 - 34782714
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    |||||||||||||||||||| |||||| |||||||| | ||||||| |||||||||||||    
T  34782773 ttatttaattaagtttaaggataaaacggtaaaatactgttaaaatccctcccctcccct 34782714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 5272146 - 5272086
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcc-cctcccct 238  Q
    |||| |||||||| ||||||||||||| |||||||||||||||||| ||||| ||||||||    
T  5272146 ttatgtaattaagattaagggtaaaacggtaaaataattttaaaatccctcctcctcccct 5272086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 5173136 - 5173082
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccct 233  Q
    |||| |||||||| |||||||||||||  ||||||||||||||||| ||||||||    
T  5173136 ttatgtaattaaggttaagggtaaaaccataaaataattttaaaatccctcccct 5173082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 17508556 - 17508507
Alignment:
Q  180 tatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctc 229  Q
    ||||||||||||||||||||||||| | |||| |||||||||||| ||||    
T  17508556 tatttaattaagtttaagggtaaaataataaattaattttaaaatccctc 17508507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 25510211 - 25510160
Alignment:
Q  185 aattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||  ||||||||||||||||||  ||||| ||||||    
T  25510211 aattaagtttaagggtaaaa--gtaaaataattttaaaatctctcccttcccct 25510160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 26046590 - 26046539
Alignment:
Q  185 aattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||  ||||||||||||||||||  ||||| ||||||    
T  26046590 aattaagtttaagggtaaaa--gtaaaataattttaaaatctctcccttcccct 26046539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 92963 - 92907
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcc 235  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| ||||||||||    
T  92963 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatccctcccctcc 92907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 401 - 342
Alignment:
Q  179 ttatttaattaagtttaagggtaaaacagtaaaataattttaaaattcctcccctcccct 238  Q
    ||||||||||||||||||||||||||| |||||||| | |||||||  ||||||||||||    
T  401 ttatttaattaagtttaagggtaaaacggtaaaatactgttaaaatctctcccctcccct 342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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