View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_high_164 (Length: 251)

Name: NF1199_high_164
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_high_164
NF1199_high_164
[»] chr6 (1 HSPs)
chr6 (12-222)||(25520554-25520766)
[»] chr5 (2 HSPs)
chr5 (65-135)||(42125905-42125975)
chr5 (92-133)||(42131137-42131178)
[»] chr2 (1 HSPs)
chr2 (28-136)||(12250645-12250753)
[»] chr3 (1 HSPs)
chr3 (28-69)||(8525340-8525381)
[»] chr4 (1 HSPs)
chr4 (73-127)||(11120690-11120743)


Alignment Details
Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 25520766 - 25520554
Alignment:
Q  12 atgaatgaatgattttattttgtggaaagtgttactaaatggtttatgtgaatgaaaatcaatagaaaagtaagtgtggatgaaatgccaaggaacacaa 111  Q
    ||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  25520766 atgaatgaatgatt--attttttggaaagtgttactaaatggtttatgtgaatgaaaaacaatagaaaagtaagtgtggatgaaatgccaagggacacaa 25520669  T
Q  112 cgtaaatatttatagccaaattgagtttttatggt-----cttggtaaccaacggtcatcattgtttgatatttataacatacgtgtaaactcgtcctaa 206  Q
    ||||||||||||||||||||||||| |||||||||     |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25520668 cgtaaatatttatagccaaattgag-ttttatggtctttacttggtaaccaatggtcatcattgtttgatatttataacatacgtgtaaactcgtcctaa 25520570  T
Q  207 ttgttttatatttcta 222  Q
    ||||||||||||||||    
T  25520569 ttgttttatatttcta 25520554  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 42125905 - 42125975
Alignment:
Q  65 gaaaatcaatagaaaagtaagtgtggatgaaatgccaaggaacacaacgtaaatatttatagccaaattga 135  Q
    ||||||||| ||||||||||||||||||||||||  ||| |||||||| ||||||||||||||||||||||    
T  42125905 gaaaatcaaaagaaaagtaagtgtggatgaaatggtaagaaacacaacctaaatatttatagccaaattga 42125975  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 42131137 - 42131178
Alignment:
Q  92 tgaaatgccaaggaacacaacgtaaatatttatagccaaatt 133  Q
    ||||||| ||| |||| |||||||||||||||||||||||||    
T  42131137 tgaaatgacaaagaacgcaacgtaaatatttatagccaaatt 42131178  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 12250645 - 12250753
Alignment:
Q  28 attttgtggaaagtgttactaaatggtttatgtgaatgaaaatcaatagaaaagtaagtgtggatga----aatgccaaggaacacaacgtaaatattta 123  Q
    ||||||||||||||||    ||||||||||  |||| ||||| ||||||||||| ||||||||||||    ||||| ||||||  ||| |||||||||||    
T  12250645 attttgtggaaagtgt----aaatggtttaactgaaagaaaaccaatagaaaagcaagtgtggatgaaatgaatgctaaggaatgcaaggtaaatattta 12250740  T
Q  124 tagccaaattgag 136  Q
    |||| ||||||||    
T  12250741 tagctaaattgag 12250753  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 8525340 - 8525381
Alignment:
Q  28 attttgtggaaagtgttactaaatggtttatgtgaatgaaaa 69  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  8525340 attttgtggaaagtgttaccaaatggtttatgtgaatgaaaa 8525381  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 11120690 - 11120743
Alignment:
Q  73 atagaaaagtaagtgtggatgaaatgccaaggaacacaacgtaaatatttatagc 127  Q
    |||||||| |||||||||||||||||  ||||||||||| | |||||||||||||    
T  11120690 atagaaaaataagtgtggatgaaatggtaaggaacacaa-gaaaatatttatagc 11120743  T

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