View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_165 (Length: 251)
Name: NF1199_high_165
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_165 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 36992770 - 36992529
Alignment:
| Q |
1 |
caatgtcgtaaaatgtcgacataagtgtgtattggacattggttttgaagtgtttaagcatagaaagtcaataagctaggagggaaaaacatgatttcag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36992770 |
caatgtcgtaaaatgtcgacataagtgtgtattggacattggttttgaagtgtttaagcatagaaagacaataagctaggagggaaaaacatgatttcag |
36992671 |
T |
|
| Q |
101 |
tgtgctaaatgacgatannnnnnnnnnnnnnnnnnnnnnnnaaaatgtacagctcaataaagtcttattatgnnnnnnnnnnnntacagctcaaattcat |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36992670 |
tgtgctaaatgacgatatttttttctttttattttatttttaaaatgtacagctcaataaagtcttattatgaaaaacaaaaaatacagctcaaattcat |
36992571 |
T |
|
| Q |
201 |
agtcaactctttcagtttcgatatttggaaatccagaattat |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
36992570 |
agtcaactctttcagtttcgatatttggaaatccagaattat |
36992529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 37018210 - 37017969
Alignment:
| Q |
1 |
caatgtcgtaaaatgtcgacataagtgtgtattggacattggttttgaagtgtttaagcatagaaagtcaataagctaggagggaaaaacatgatttcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37018210 |
caatgtcgtaaaatgtcgacataagtgtgtattggacattggttttgaagtgtttaagcatagaaagacaataagctaggagggaaaaacatgatttcag |
37018111 |
T |
|
| Q |
101 |
tgtgctaaatgacgatannnnnnnnnnnnnnnnnnnnnnnnaaaatgtacagctcaataaagtcttattatgnnnnnnnnnnnntacagctcaaattcat |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37018110 |
tgtgctaaatgacgatatttttttctttttattttatttttaaaatgtacagctcaataaagtcttattatgaaaaacaaaaaatacagctcaaattcat |
37018011 |
T |
|
| Q |
201 |
agtcaactctttcagtttcgatatttggaaatccagaattat |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
37018010 |
agtcaactctttcagtttcgatatttggaaatccagaattat |
37017969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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