View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_168 (Length: 250)
Name: NF1199_high_168
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_168 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28521938 - 28522159
Alignment:
| Q |
1 |
tatgatggtatcaactatccaaccatgcaacttagcttggaaagcaagaaagagaaacaaattggagtttttaggagaacagtgaccaatgtaggtcctg |
100 |
Q |
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| T |
28521938 |
tatgatgctatcaactatccaaccatgcaacttagcttggaaagcaagaaagagacacaaattggagtttttagaagaacagtgaccaatgtaggtcctg |
28522037 |
T |
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| Q |
101 |
ttccaattacctacaatgctactattagatcaccaaaaggagttgaaatcacagtgaagcctagtgtccttagttttgatnnnnnnntgcagaagagaag |
200 |
Q |
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| T |
28522038 |
ttccaattacctacaatgctactattagatcaccaaaaggagttgaaatcacagtgaagcctagtgtccttagttttgataaaaaaatgcagaagagaag |
28522137 |
T |
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| Q |
201 |
cttcaaagtaattgtgaaagtt |
222 |
Q |
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| T |
28522138 |
cttcaaagtaattgtgaaagtt |
28522159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 34294486 - 34294585
Alignment:
| Q |
64 |
ggagtttttaggagaacagtgaccaatgtaggtcctgttccaattacctacaatgctactattagatcaccaaaaggagttgaaatcacagtgaagccta |
163 |
Q |
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| T |
34294486 |
ggagttttcaggagaagagttaccaatgtaggtcctggaccaacaatgtataatgctaccattaaatcaccaaaaggtgtggaaattacagtgaagccta |
34294585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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