View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1199_high_180 (Length: 229)
Name: NF1199_high_180
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_180 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 3855407 - 3855547
Alignment:
| Q |
12 |
tttatgaacatggtgtatagttaagaccccattcccattcaagttcaaaacaacaagaggtgaataagttagaatgccatgtggcaagcaaatgggggta |
111 |
Q |
| |
|
||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| |
|
|
| T |
3855407 |
tttatcaacatggtatatcattaagaccccattcccattcaagttcaaaacaacaagaggtgaataagttagaatgggacctgggaagcaaatgggggta |
3855506 |
T |
|
| Q |
112 |
gtggaagagtgctgcaaaaaagtgagatcgacatgatcaac |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3855507 |
gtggaagagtgctgcaaaaaagtgagatcgacatgatcaac |
3855547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 4141197 - 4141082
Alignment:
| Q |
31 |
gttaagaccccattcccattcaagttcaaaacaacaagaggtgaataagttagaatgccatgtggcaagcaaatgggggtagtggaagag---tgctgca |
127 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||| || |||||| || ||||||| |||| ||||||| ||||||| ||||||| |
|
|
| T |
4141197 |
gttaacaccccattcccattcaagttcaaaacaacaagagttgaacaa---agaatgttatttggcaagtaaatcggggtagcggaagagtgctgctgca |
4141101 |
T |
|
| Q |
128 |
aaaaagtgagatcgacatg |
146 |
Q |
| |
|
||||||||| ||| ||||| |
|
|
| T |
4141100 |
aaaaagtgaaatcaacatg |
4141082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 41541734 - 41541658
Alignment:
| Q |
39 |
cccattcccattcaagttcaaaacaacaagaggtgaataagttagaatgccatgtggcaagcaaatgggggtagtgg |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||| || ||||||| || | |||| ||||||||||||||| |
|
|
| T |
41541734 |
cccattcccattcaaattcaaaacaacaagagttgaacaaattagaatcttctgagtcaagtaaatgggggtagtgg |
41541658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 1881567 - 1881509
Alignment:
| Q |
95 |
gcaagcaaatgggggtagtggaagagtgctgcaaaaaagtgagatcgacatgatcaact |
153 |
Q |
| |
|
||||| ||||||||||||||| ||| |||| || ||||||||||| |||||| |||||| |
|
|
| T |
1881567 |
gcaagtaaatgggggtagtgggagaatgctacagaaaagtgagattgacatgttcaact |
1881509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University