View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_181 (Length: 228)
Name: NF1199_high_181
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_181 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 56 - 228
Target Start/End: Complemental strand, 10869485 - 10869313
Alignment:
| Q |
56 |
tggagaaaattaataatttaaaatttttgtttgacctttttctccaatacattgctcacacatattattatatgataacattgttaagtgaactgcctgc |
155 |
Q |
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| T |
10869485 |
tggagaaaattaataatttaaaatttttgtttgacctttttctccaatacattgctcacacatattattatatgataacattgttaagtgaactgcctgc |
10869386 |
T |
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| Q |
156 |
cttgcacgcaaacaaagatggtgagagaagaatattaaaaaaccagaaaatgtatttggactgtactctcatt |
228 |
Q |
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| T |
10869385 |
cttgcacgcaaacaaagatggtgagagaagaatattaaaaaaccagaaaatgtatttggactgtactctcatt |
10869313 |
T |
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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 41285110 - 41285168
Alignment:
| Q |
1 |
tcatcatgtttaaatcaaatatatgatgtagaagactccttgagagaaatatttttgga |
59 |
Q |
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| T |
41285110 |
tcatgatgtttaaatcaaatatatgatgtagaagactccttgaaagaaatattattgga |
41285168 |
T |
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