View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_186 (Length: 223)
Name: NF1199_high_186
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_186 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 15348799 - 15348587
Alignment:
| Q |
1 |
gaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgattttg |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15348799 |
gaaatccggtggatggattccatagatagaggattgaataatagttcaaaagtacaaagcctctacatgaacctttaatttcaaaatcagaatgattttg |
15348700 |
T |
|
| Q |
101 |
tggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaatgaggtagatgacctatgcacaaaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15348699 |
tggatgtagaaaatcaacattgagtgaagcagaagtagaataatcatcaagcgatgctgctaaatctatagaatgaggtagatgacctatgcacaaaatt |
15348600 |
T |
|
| Q |
201 |
ctacgagtctgtg |
213 |
Q |
| |
|
|||||||| |||| |
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| T |
15348599 |
ctacgagtgtgtg |
15348587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 48870479 - 48870302
Alignment:
| Q |
1 |
gaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgattttg |
100 |
Q |
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||||||||||||||||||||||||| |||||| ||| | | | | ||| | || |||||||||||||||||||| ||||||||||||| ||| | || |
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| T |
48870479 |
gaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaatttcaaaatcataataagattc |
48870380 |
T |
|
| Q |
101 |
tggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaatgagg |
178 |
Q |
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||| | |||||||||| ||||| ||||| ||| ||||||||| | ||||||||| | |||||||||||||| |||| |
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| T |
48870379 |
aggaagcagaaaatcaagattgactgaagaagagatagaatcataagcaagcgatgcttctaaatctatagaacgagg |
48870302 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 48886165 - 48885988
Alignment:
| Q |
1 |
gaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgattttg |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| | | | | ||| | || |||||||||||||||||||| ||||||||||||| ||| | || |
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| T |
48886165 |
gaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaatttcaaaatcataataagattc |
48886066 |
T |
|
| Q |
101 |
tggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaatgagg |
178 |
Q |
| |
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||| | |||||||||| ||||| ||||| ||| ||||||||| | ||||||||| | |||||||||||||| |||| |
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| T |
48886065 |
aggaagcagaaaatcaagattgactgaagaagagatagaatcataagcaagcgatgcttctaaatctatagaacgagg |
48885988 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 48875783 - 48875606
Alignment:
| Q |
1 |
gaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgattttg |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| || | | ||| |||| ||||||||| || ||||||| ||||||||||||| | | | || |
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| T |
48875783 |
gaaatccggtggatggattccataggtagaggcttgaaaaacaatgcaacagtataaagcctctgcaagaacctttaatttcaaaatcatagttaggttc |
48875684 |
T |
|
| Q |
101 |
tggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaatgagg |
178 |
Q |
| |
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||| | |||||||||| ||||| | || |||| ||| ||||| | ||||||||| | | ||||||||||| ||||| |
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| T |
48875683 |
aggaagaagaaaatcaagattgaccgcagaagaaatagtatcataaccaagcgatgcttccaaatctatagactgagg |
48875606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 50250933 - 50251011
Alignment:
| Q |
6 |
ccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaa |
84 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| || ||| |||| || ||| |||||||||||||||| |||||||| |
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| T |
50250933 |
ccggtggatggattccataggtagaggcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaatttcaa |
50251011 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 45366402 - 45366489
Alignment:
| Q |
47 |
caaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaa |
134 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| || |||||||| | || ||| | ||||||| || |||||||||||||||| |
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| T |
45366402 |
caaaagtataaagcctctacatgaacctttaatttgaagatcagaataagattcgggaagcagaaaatgaagattgagtgaagcagaa |
45366489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 45372215 - 45372350
Alignment:
| Q |
9 |
gtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgattttgtggatgta |
108 |
Q |
| |
|
|||||||||||||||||||||| | |||||| | | ||||| || ||| |||||||||||||||| |||||||| |||| ||||| ||| |||| | |
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| T |
45372215 |
gtggatggattccatagatagaaggttgaattaccatgcaaaaatataaaccctctacatgaacctttaatttcaagatcaaaatgagattggggatcca |
45372314 |
T |
|
| Q |
109 |
gaaaatcaacattgagtgaagcagaagtagaatcat |
144 |
Q |
| |
|
|||| || || ||||||||||||| |||||||| |
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| T |
45372315 |
caaaactaaggtttagtgaagcagaagcagaatcat |
45372350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 37827132 - 37827212
Alignment:
| Q |
1 |
gaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaattt |
81 |
Q |
| |
|
||||||| |||||||||||||||| |||| |||| || || || ||||| |||||| ||||||| |||||||| ||||| |
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|
| T |
37827132 |
gaaatccagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacctgaacctttaattt |
37827212 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 29696149 - 29696075
Alignment:
| Q |
1 |
gaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaacctt |
75 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| |||| ||| |||||||||||| |||||||||||| ||||||| |
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|
| T |
29696149 |
gaaatccggtggatggattccatatacagaggcttgagtaacagttcaaaagtataaagcctctacacgaacctt |
29696075 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 29688044 - 29687975
Alignment:
| Q |
5 |
tccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaacct |
74 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||| | |||||| ||| ||||||||||||||| |
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|
| T |
29688044 |
tccggtggatggattccatagataaaggcttgaataaccggagcaaagtataaaacctctacatgaacct |
29687975 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 21015735 - 21015672
Alignment:
| Q |
9 |
gtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaac |
72 |
Q |
| |
|
||||||||||||||||| |||| |||||||| || || ||||| || ||| ||||||||||||| |
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|
| T |
21015735 |
gtggatggattccataggtagatgtttgaatcatggtgcaaaaatataaaccctctacatgaac |
21015672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 47452053 - 47452128
Alignment:
| Q |
9 |
gtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaa |
84 |
Q |
| |
|
|||||||||||||||| |||| ||||||| || | | ||||||| ||| |||||||||||||||| |||||||| |
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|
| T |
47452053 |
gtggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctacatgaacctttaatttcaa |
47452128 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 11015668 - 11015740
Alignment:
| Q |
12 |
gatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaa |
84 |
Q |
| |
|
|||||||||||||| |||| ||||||| || | |||||| || ||| ||||||||||||| || |||||||| |
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| T |
11015668 |
gatggattccataggtagatgtttgaagaacaagtcaaaactataaatcctctacatgaacttttaatttcaa |
11015740 |
T |
|
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