View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_high_19 (Length: 594)

Name: NF1199_high_19
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_high_19
NF1199_high_19
[»] chr1 (36 HSPs)
chr1 (237-586)||(5178577-5178939)
chr1 (59-208)||(5178940-5179089)
chr1 (133-293)||(52008915-52009076)
chr1 (298-471)||(52112319-52112492)
chr1 (294-441)||(11802906-11803054)
chr1 (338-473)||(48502532-48502667)
chr1 (293-468)||(13643546-13643722)
chr1 (346-443)||(33255184-33255281)
chr1 (346-443)||(33275356-33275453)
chr1 (326-469)||(13969099-13969242)
chr1 (352-469)||(50127374-50127490)
chr1 (351-471)||(15419676-15419795)
chr1 (294-413)||(33827793-33827912)
chr1 (294-413)||(33840053-33840172)
chr1 (351-470)||(26855852-26855969)
chr1 (354-470)||(31884488-31884603)
chr1 (347-414)||(25161437-25161504)
chr1 (356-443)||(50295235-50295322)
chr1 (392-469)||(16963641-16963716)
chr1 (294-375)||(37276609-37276692)
chr1 (294-469)||(48282857-48283023)
chr1 (354-413)||(44109099-44109158)
chr1 (321-368)||(50295330-50295377)
chr1 (321-419)||(2356373-2356470)
chr1 (375-473)||(27742521-27742617)
chr1 (134-231)||(32462556-32462654)
chr1 (130-232)||(46874558-46874660)
chr1 (301-467)||(30627588-30627755)
chr1 (351-439)||(26829492-26829580)
chr1 (159-232)||(15504683-15504755)
chr1 (293-379)||(39283349-39283433)
chr1 (432-465)||(19068195-19068228)
chr1 (432-465)||(19116085-19116118)
chr1 (400-469)||(20471727-20471795)
chr1 (400-469)||(20559742-20559810)
chr1 (354-419)||(50468835-50468900)
[»] chr4 (19 HSPs)
chr4 (294-470)||(50086601-50086776)
chr4 (296-473)||(16072308-16072486)
chr4 (321-465)||(6480665-6480810)
chr4 (320-470)||(40161028-40161177)
chr4 (324-443)||(30116742-30116861)
chr4 (324-415)||(27655328-27655421)
chr4 (327-441)||(49649889-49650003)
chr4 (354-443)||(41377197-41377286)
chr4 (325-416)||(42810387-42810478)
chr4 (327-442)||(50095252-50095367)
chr4 (321-398)||(21416205-21416282)
chr4 (334-442)||(14815371-14815480)
chr4 (384-448)||(21416128-21416192)
chr4 (299-421)||(31241923-31242047)
chr4 (352-471)||(31647690-31647808)
chr4 (352-413)||(38320145-38320206)
chr4 (384-467)||(22280312-22280394)
chr4 (324-469)||(27284042-27284187)
chr4 (296-406)||(41142262-41142374)
[»] chr6 (13 HSPs)
chr6 (296-471)||(17900713-17900890)
chr6 (296-448)||(11101891-11102044)
chr6 (293-468)||(22297543-22297719)
chr6 (322-441)||(19418593-19418712)
chr6 (299-471)||(26608878-26609051)
chr6 (333-467)||(10252938-10253072)
chr6 (320-445)||(31577876-31578001)
chr6 (293-442)||(10008190-10008340)
chr6 (384-443)||(1970905-1970964)
chr6 (356-413)||(17506292-17506349)
chr6 (322-469)||(21809802-21809948)
chr6 (372-419)||(29403599-29403646)
chr6 (293-406)||(6770867-6770982)
[»] chr7 (16 HSPs)
chr7 (300-471)||(19777887-19778058)
chr7 (325-470)||(26203018-26203162)
chr7 (298-473)||(7833714-7833891)
chr7 (295-432)||(1703841-1703980)
chr7 (318-439)||(11740353-11740474)
chr7 (321-469)||(48984345-48984492)
chr7 (352-473)||(41434671-41434788)
chr7 (352-470)||(8117470-8117587)
chr7 (293-471)||(45907001-45907178)
chr7 (293-397)||(11736099-11736207)
chr7 (384-441)||(11736224-11736281)
chr7 (352-413)||(16861703-16861764)
chr7 (352-413)||(22035758-22035819)
chr7 (356-419)||(3624254-3624317)
chr7 (351-441)||(33194720-33194810)
chr7 (296-469)||(24937802-24937976)
[»] chr3 (24 HSPs)
chr3 (296-473)||(29458000-29458179)
chr3 (327-471)||(20585773-20585917)
chr3 (325-470)||(26835696-26835841)
chr3 (293-469)||(44291196-44291372)
chr3 (297-471)||(49452577-49452751)
chr3 (373-471)||(32961150-32961247)
chr3 (326-447)||(45054379-45054500)
chr3 (297-442)||(14622091-14622238)
chr3 (318-469)||(35483565-35483716)
chr3 (326-445)||(30863626-30863747)
chr3 (298-376)||(32961504-32961582)
chr3 (352-472)||(43862909-43863028)
chr3 (320-471)||(15671111-15671261)
chr3 (352-472)||(42163633-42163752)
chr3 (354-419)||(17109563-17109628)
chr3 (354-471)||(32720549-32720664)
chr3 (359-415)||(49419085-49419141)
chr3 (294-469)||(42437682-42437857)
chr3 (352-410)||(44041351-44041409)
chr3 (296-413)||(27144025-27144145)
chr3 (352-471)||(36436552-36436671)
chr3 (351-413)||(35322035-35322096)
chr3 (324-397)||(4020140-4020213)
chr3 (433-461)||(34681201-34681229)
[»] chr8 (20 HSPs)
chr8 (342-473)||(22266239-22266368)
chr8 (328-471)||(38388490-38388634)
chr8 (335-468)||(24757057-24757187)
chr8 (326-443)||(1988776-1988893)
chr8 (299-440)||(34832274-34832417)
chr8 (327-471)||(1551464-1551607)
chr8 (320-437)||(35762292-35762408)
chr8 (351-471)||(37919368-37919487)
chr8 (295-396)||(13904004-13904105)
chr8 (327-419)||(9791862-9791953)
chr8 (320-410)||(37564779-37564869)
chr8 (364-469)||(39065572-39065676)
chr8 (324-470)||(41726865-41727011)
chr8 (296-464)||(39534107-39534275)
chr8 (351-413)||(20821916-20821978)
chr8 (351-405)||(28462569-28462623)
chr8 (110-174)||(11475475-11475539)
chr8 (351-419)||(14110639-14110706)
chr8 (293-333)||(35467792-35467832)
chr8 (387-467)||(38362265-38362344)
[»] chr2 (14 HSPs)
chr2 (302-470)||(35501370-35501538)
chr2 (300-470)||(19994891-19995062)
chr2 (296-442)||(19606241-19606387)
chr2 (320-473)||(43248667-43248820)
chr2 (326-473)||(41385006-41385152)
chr2 (356-471)||(16498137-16498252)
chr2 (318-441)||(36622101-36622225)
chr2 (296-472)||(1870462-1870639)
chr2 (318-419)||(143884-143986)
chr2 (335-405)||(40664661-40664731)
chr2 (320-473)||(40574137-40574290)
chr2 (430-471)||(11610513-11610554)
chr2 (293-471)||(3689584-3689762)
chr2 (322-439)||(27896463-27896580)
[»] chr5 (13 HSPs)
chr5 (294-470)||(8435026-8435204)
chr5 (293-470)||(19129691-19129871)
chr5 (296-472)||(35556850-35557027)
chr5 (320-471)||(2611142-2611293)
chr5 (299-470)||(7609513-7609683)
chr5 (293-471)||(14863305-14863484)
chr5 (296-391)||(26139710-26139807)
chr5 (321-410)||(10568975-10569063)
chr5 (354-473)||(21052656-21052774)
chr5 (376-470)||(7319227-7319321)
chr5 (387-472)||(28812257-28812342)
chr5 (354-413)||(11320151-11320210)
chr5 (343-469)||(16801998-16802123)
[»] scaffold0005 (1 HSPs)
scaffold0005 (334-442)||(24231-24340)
[»] scaffold0886 (1 HSPs)
scaffold0886 (354-413)||(1133-1192)
[»] scaffold0034 (1 HSPs)
scaffold0034 (351-470)||(22449-22567)
[»] scaffold0006 (1 HSPs)
scaffold0006 (354-473)||(38769-38886)
[»] scaffold1372 (1 HSPs)
scaffold1372 (294-387)||(1238-1332)
[»] scaffold0045 (2 HSPs)
scaffold0045 (327-414)||(60429-60516)
scaffold0045 (327-414)||(67761-67848)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 237 - 586
Target Start/End: Complemental strand, 5178939 - 5178577
Alignment:
Q  237 tattcaagtaaaacataaggtctttcagtagttttgaacttttgatgcatttttagtaagggtcttgttaaccagtgcc-ccgag-cactggttaaggaa 334  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |||| |||||||||    
T  5178939 tattcaagtaaaacattaggtctttcggtagttttgaacttttgatgcatttttagtaagggtcttgttaaccaatgcctccgggacactcgttaaggaa 5178840  T
Q  335 tccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgctt 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5178839 tccaaaagtagaaaaattgtcttggaaacataaactgttactttttactaactaattattacaccactttttaataaaattttacctattttagctgctt 5178740  T
Q  435 aaccaatgctccgggggcactggttaacattctccttttagtaaatatggttttcaattgattgactttctttgattcagaggaccgtaaaatggaggac 534  Q
    |||||||||   |||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  5178739 aaccaatgccgtgggggcactggttaacattctccttttagtaaatagtgttttcaattgattgaatttctttgatttataggaccgtaaaatggaggac 5178640  T
Q  535 caaattgcttgaccc-----------ggaccgaaattttaattattcaagttaaatattcttg 586  Q
    |||||||||||||||           |||||||||||||||||||||||||||||||||||||    
T  5178639 caaattgcttgaccctaaaattttgaggaccgaaattttaattattcaagttaaatattcttg 5178577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 59 - 208
Target Start/End: Complemental strand, 5179089 - 5178940
Alignment:
Q  59 caagtagtaaatcgtcattatagtcattttgaaaggttcattgatttagtgcctcaaagttacaaaattgctatttagtcccttaacgtgaacaatgtcc 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5179089 caagtagtaaatcgtcattatagtcattttgaaaggttcattgatttagtgcctcaaagttacaaaattgctatttagtcccttaacgtgaacaatgtcc 5178990  T
Q  159 gtcaatttagtcatttttcaaatttagcatcacaagtttagagattctat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5178989 gtcaatttagtcatttttcaaatttagcatcacaagtttagagattctat 5178940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 133 - 293
Target Start/End: Complemental strand, 52009076 - 52008915
Alignment:
Q  133 ttagtcccttaacgtgaacaatgtcc-gtcaatttagtcatttttcaaatttagcatcacaagtttagagattctatgtttgtcttgacgcagcaagaga 231  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||| ||| | |||||||||||||||| ||||||| |||| |||| |||||||||||    
T  52009076 ttagtcccttaacgcgaacaatgtcctgtcaatttagtcatttttcatattcaacatcacaagtttagaggttctatgcttgttttgatgcagcaagaga 52008977  T
Q  232 ccgactattcaagtaaaacataaggtctttcagtagttttgaacttttgatgcatttttagt 293  Q
    ||||||| ||||||||||||| ||||||||||||  ||||||||||||||| ||||||||||    
T  52008976 ccgactactcaagtaaaacattaggtctttcagtgtttttgaacttttgatacatttttagt 52008915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 298 - 471
Target Start/End: Complemental strand, 52112492 - 52112319
Alignment:
Q  298 gtcttgttaaccagtgccccgagc-actggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattac 396  Q
    ||||||||||| ||||||||| |  ||||||||||||||||| | |||||||||||||||| ||||||||||| ||||||||| | ||||||| ||||||    
T  52112492 gtcttgttaactagtgccccggggtactggttaaggaatccataggtagaaaaattgtctttgaaacataaacggttactttt-actaactaactattac 52112394  T
Q  397 atcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcctt 471  Q
    | |||||||||||||||| ||  || ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52112393 accactttttaataaaatcttttctcttttagctgcttaaccaatgctccgggggcacttgttaacattctcctt 52112319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 294 - 441
Target Start/End: Complemental strand, 11803054 - 11802906
Alignment:
Q  294 aagggtcttgttaaccagtgccccgag-cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaatta 392  Q
    |||| ||||||||||| ||||| || | ||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||| | ||||||||||    
T  11803054 aaggatcttgttaaccggtgcctcggggcaccggttaaggaatccaaaagtagaaaaattgttttggaaatataaactgttacttttgactaactaatta 11802955  T
Q  393 ttacatcactttttaataaaattttacctattttagctgcttaaccaat 441  Q
    |||||| ||||||||||||| | ||   | |||||||||||||||||||    
T  11802954 ttacattactttttaataaattctttagtcttttagctgcttaaccaat 11802906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 338 - 473
Target Start/End: Complemental strand, 48502667 - 48502532
Alignment:
Q  338 aaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaac 437  Q
    ||||||||||||||||||||| ||| |||| ||||||||||| | |||||||||||||||  |||||||||||||||||||||| |||  | | ||||||    
T  48502667 aaaagtagaaaaattgtcttgaaaatataagctgttacttttgactaactaattattacacaactttttaataaaattttacctctttaggttacttaac 48502568  T
Q  438 caatgctccgggggcactggttaacattctcctttt 473  Q
    ||||||||||| |  || ||||||||||||| ||||    
T  48502567 caatgctccggagatacgggttaacattctcatttt 48502532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 293 - 468
Target Start/End: Complemental strand, 13643722 - 13643546
Alignment:
Q  293 taagggtcttgttaaccagtgcccc-ga-gcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaat 390  Q
    |||||||||||||||||  | |||| || ||| |||||||||||| || ||||| ||||||||||||| ||| |||||| ||||||||| |  || ||||    
T  13643722 taagggtcttgttaaccgatacccctgatgcattggttaaggaattcataagtaaaaaaattgtcttgaaaatataaaccgttacttttgacaaattaat 13643623  T
Q  391 tattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctc 468  Q
    ||||||| ||| ||||||||||||||||  | |||||||||||||| |||||| || | | ||| |||||| ||||||    
T  13643622 tattacaccac-ttttaataaaattttatttcttttagctgcttaatcaatgccccagagacaccggttaatattctc 13643546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 346 - 443
Target Start/End: Original strand, 33255184 - 33255281
Alignment:
Q  346 aaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgc 443  Q
    ||||||||||||  ||| ||||||| ||| ||||||||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||| ||||||    
T  33255184 aaaaattgtcttaaaaatataaactattattttttattaactaattattacatcattttttgataaaattttatctcttttaactgcttaatcaatgc 33255281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 346 - 443
Target Start/End: Original strand, 33275356 - 33275453
Alignment:
Q  346 aaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgc 443  Q
    ||||||||||||  ||| ||||||| ||| ||||||||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||| ||||||    
T  33275356 aaaaattgtcttaaaaatataaactattattttttattaactaattattacatcattttttgataaaattttatctcttttaactgcttaatcaatgc 33275453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 326 - 469
Target Start/End: Original strand, 13969099 - 13969242
Alignment:
Q  326 gttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattt 425  Q
    ||||||||||| | || ||||||  |||||||| ||| ||||| |||||||||| ||||| |||||||||||  | ||||| ||||||  |||| | |||    
T  13969099 gttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttacttttaattaagtaattattacacaattttttcataaaaacttacttgttt 13969198  T
Q  426 tagctgcttaaccaatgctccgggggcactggttaacattctcc 469  Q
    | | |||||||||||| |||  ||||||||||||||||||||||    
T  13969199 tggttgcttaaccaatactcttggggcactggttaacattctcc 13969242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 352 - 469
Target Start/End: Original strand, 50127374 - 50127490
Alignment:
Q  352 tgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccggggg 451  Q
    ||||||||||| ||||||||| | |||||||  | |||| ||||||| ||||||||||||||  |||| | |||| | | |||||||||||| |||||||    
T  50127374 tgtcttggaaatataaactgtcattttttatcgagtaataattacattactttttaataaaaacttacttcttttgg-tacttaaccaatgccccggggg 50127472  T
Q  452 cactggttaacattctcc 469  Q
    ||||||||||||||||||    
T  50127473 cactggttaacattctcc 50127490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 351 - 471
Target Start/End: Original strand, 15419676 - 15419795
Alignment:
Q  351 ttgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggg 450  Q
    |||| ||||||| |||||||||||||||||||||| |||| |||| || |||||||||||||| |||| || | || | || |||||||||||||||| |    
T  15419676 ttgtattggaaatataaactgttactttttattaagtaataattatattactttttaataaaaattta-ctttatttggtgtttaaccaatgctccggag 15419774  T
Q  451 gcactggttaacattctcctt 471  Q
     ||| |||||| |||||||||    
T  15419775 acacgggttaatattctcctt 15419795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 413
Target Start/End: Original strand, 33827793 - 33827912
Alignment:
Q  294 aagggtcttgttaaccagtgccccgagcactggttaaggaatccaaaagtagaaaaat-tgtcttggaaacataaactgttactttttattaactaatta 392  Q
    ||||||||||||||| ||||||| ||||||||||||||||||| | || || ||   | ||||||||||| ||||||  | |||||||||||| |||| |    
T  33827793 aagggtcttgttaactagtgccc-gagcactggttaaggaatctataaataaaattttctgtcttggaaatataaacgatcactttttattaagtaataa 33827891  T
Q  393 ttacatcactttttaataaaa 413  Q
    |||||| ||||||||||||||    
T  33827892 ttacattactttttaataaaa 33827912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 413
Target Start/End: Complemental strand, 33840172 - 33840053
Alignment:
Q  294 aagggtcttgttaaccagtgccccgagcactggttaaggaatccaaaagtagaaaaat-tgtcttggaaacataaactgttactttttattaactaatta 392  Q
    ||||||||||||||| ||||||| ||||||||||||||||||| | || || ||   | ||||||||||| ||||||  | |||||||||||| |||| |    
T  33840172 aagggtcttgttaactagtgccc-gagcactggttaaggaatctataaataaaattttctgtcttggaaatataaacgatcactttttattaagtaataa 33840074  T
Q  393 ttacatcactttttaataaaa 413  Q
    |||||| ||||||||||||||    
T  33840073 ttacattactttttaataaaa 33840053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 351 - 470
Target Start/End: Original strand, 26855852 - 26855969
Alignment:
Q  351 ttgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggg 450  Q
    |||||||||||| |||| |||| ||||||||| || |||| ||||||| |||||| ||||||| ||||| |  ||| | |||||||||||||| |||| |    
T  26855852 ttgtcttggaaatataatctgtcactttttatcaagtaataattacattactttt-aataaaaatttactttatttgg-tgcttaaccaatgccccggag 26855949  T
Q  451 gcactggttaacattctcct 470  Q
    |||| |||||||||||||||    
T  26855950 gcaccggttaacattctcct 26855969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 354 - 470
Target Start/End: Original strand, 31884488 - 31884603
Alignment:
Q  354 tcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggca 453  Q
    ||||||||| ||||||||  | ||||||| || |||| ||||||| ||||||||||||||  ||| || |||| | ||||||||||||||  | ||||||    
T  31884488 tcttggaaatataaactgacattttttatcaaataataattacattactttttaataaaaactta-ctttttttggtgcttaaccaatgcctccggggca 31884586  T
Q  454 ctggttaacattctcct 470  Q
     ||||||||||||||||    
T  31884587 atggttaacattctcct 31884603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 414
Target Start/End: Original strand, 25161437 - 25161504
Alignment:
Q  347 aaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaat 414  Q
    ||||||| ||| |||| |||||||||||  ||||| ||||||||||||||| ||||||||||||||||    
T  25161437 aaaattgccttcgaaatataaactgttatattttactaactaattattacaccactttttaataaaat 25161504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 443
Target Start/End: Complemental strand, 50295322 - 50295235
Alignment:
Q  356 ttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgc 443  Q
    ||||||| ||||||||||| |||| |  |||||||||||||| || |||||| |||||| | || | |||||||||||||||||||||    
T  50295322 ttggaaatataaactgttatttttaaccaactaattattacaacattttttactaaaatctcacttcttttagctgcttaaccaatgc 50295235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 392 - 469
Target Start/End: Original strand, 16963641 - 16963716
Alignment:
Q  392 attacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcc 469  Q
    ||||||| |||||||||||||| ||||| |  ||| | ||||||||||||||||||||| ||||||||||||||||||    
T  16963641 attacattactttttaataaaaatttacttcatttgg-tgcttaaccaatgctccgggg-cactggttaacattctcc 16963716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 37276692 - 37276609
Alignment:
Q  294 aagggtcttgttaaccagtgcccc--gagcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttac 375  Q
    ||||||||||||||| ||||||||  ||||| ||||||||||| |||  | ||||||  |||||||||||||||||| ||||||    
T  37276692 aagggtcttgttaactagtgcccccggagcattggttaaggaacccattaatagaaattttgtcttggaaacataaaatgttac 37276609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 469
Target Start/End: Original strand, 48282857 - 48283023
Alignment:
Q  294 aagggtcttgttaaccagtgcccc--gagcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaatt 391  Q
    |||||||||||||||| |||||||  | ||||||||||||||||| | || |||||    ||||||| ||| |||| |||| ||||||||| |  ||||     
T  48282857 aagggtcttgttaaccggtgcccccggggcactggttaaggaatctataaatagaatttctgtcttgaaaatataatctgtcactttttatcaggtaata 48282956  T
Q  392 attacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcc 469  Q
    ||||||| |||||||| |||||  |           | |||||||||||||| |||||||||||||||||||||||||    
T  48282957 attacattactttttagtaaaaact-----------ggtgcttaaccaatgccccgggggcactggttaacattctcc 48283023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 44109099 - 44109158
Alignment:
Q  354 tcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaa 413  Q
    ||||||||| |||||||||  ||||||||||| |||| ||||||| ||||||||||||||    
T  44109099 tcttggaaatataaactgtccctttttattaagtaataattacattactttttaataaaa 44109158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 321 - 368
Target Start/End: Complemental strand, 50295377 - 50295330
Alignment:
Q  321 cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaa 368  Q
    ||||| |||||||||||||||||||||||||||| ||||||| |||||    
T  50295377 cactgattaaggaatccaaaagtagaaaaattgttttggaaatataaa 50295330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 419
Target Start/End: Original strand, 2356373 - 2356470
Alignment:
Q  321 cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttac 419  Q
    |||||||| ||||||||||||||| ||||||||||||  ||| ||||| ||||| |||| |  |||||| |||||||  |||||| |||||||| ||||    
T  2356373 cactggttgaggaatccaaaagtaaaaaaattgtcttaaaaatataaattgttatttttgaccaactaa-tattacacaacttttaaataaaatcttac 2356470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 473
Target Start/End: Complemental strand, 27742617 - 27742521
Alignment:
Q  375 ctttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcctttt 473  Q
    ||||||||||| |||| ||||||| ||||||||||||||  |||| | |||| | |||||||||||||| |||||  |||  |||||||||||||||||    
T  27742617 ctttttattaagtaataattacattactttttaataaaaaattacttctttt-gttgcttaaccaatgc-ccgggaacaccagttaacattctcctttt 27742521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 32462556 - 32462654
Alignment:
Q  134 tagtcccttaacgtgaacaatgtccgtcaatttagtcatttt-tcaaatttagcatcacaagtttagagattctatgtttgtcttgacgcagcaagaga 231  Q
    ||||| |||||  ||||| ||||| ||||||||||||||||| ||||||||| || ||||| |||| || ||||||  ||||||||  |||||||||||    
T  32462556 tagtctcttaaactgaaccatgtcagtcaatttagtcattttttcaaatttaacaccacaattttaaaggttctatacttgtcttggtgcagcaagaga 32462654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 46874558 - 46874660
Alignment:
Q  130 tatttagtcccttaacgtgaacaatgtccgtcaatttagtcatttttcaaatttagcatcacaagtttagagattctatgtttgtcttgacgcagcaaga 229  Q
    ||||||| |||||||  |||||||  |  ||||||||||||||||||||||||||    ||||| |||  ||||||||||||| |||||| ||| |||||    
T  46874558 tatttagccccttaaattgaacaacttaagtcaatttagtcatttttcaaatttacggccacaattttgaagattctatgtttatcttgatgcatcaaga 46874657  T
Q  230 gac 232  Q
    |||    
T  46874658 gac 46874660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 301 - 467
Target Start/End: Original strand, 30627588 - 30627755
Alignment:
Q  301 ttgttaaccagtgcccc-gag-cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacat 398  Q
    ||||||||||||||||  ||| ||||| |||||||||| | || |||||    ||||||||||| |||| |||| ||||||||| || |||| |||||||    
T  30627588 ttgttaaccagtgcccttgagacactgattaaggaatctataaatagaatttatgtcttggaaatataacctgtcactttttataaagtaatgattacat 30627687  T
Q  399 cactttttaa-taaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattct 467  Q
     ||||||||| ||||| ||||| | | || | |||||||||||||| ||  |||||| ||||||||||||    
T  30627688 tactttttaattaaaaatttacttctctt-ggtgcttaaccaatgcacc-tgggcaccggttaacattct 30627755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 439
Target Start/End: Complemental strand, 26829580 - 26829492
Alignment:
Q  351 ttgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaacca 439  Q
    |||||||||||| ||||  |||||||||| || || |||| ||||||  ||||||| || ||| ||||| |||||||| ||||||||||    
T  26829580 ttgtcttggaaatataagatgttacttttgataaagtaatgattacacaactttttcatgaaaatttacttattttagatgcttaacca 26829492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 15504755 - 15504683
Alignment:
Q  159 gtcaatttagtcat-ttttcaaatttagcatcacaagtttagagattctatgtttgtcttgacgcagcaagagac 232  Q
    |||||||||||||| ||||||||||||||| ||||| |||| || ||  ||||||||||||| ||| ||||||||    
T  15504755 gtcaatttagtcatattttcaaatttagcaccacaattttaaagttt--atgtttgtcttgatgcaacaagagac 15504683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 379
Target Start/End: Original strand, 39283349 - 39283433
Alignment:
Q  293 taagggtcttgttaaccagtgccccgagcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttt 379  Q
    |||||||||||||||||||  | |||   |||||||||||||| |||||| | |||||||||||| |||| ||||| | ||||||||    
T  39283349 taagggtcttgttaaccag--ctccggatactggttaaggaattcaaaaggataaaaattgtctttgaaatataaaatattactttt 39283433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 465
Target Start/End: Original strand, 19068195 - 19068228
Alignment:
Q  432 cttaaccaatgctccgggggcactggttaacatt 465  Q
    |||||||| |||||||||||||||||||||||||    
T  19068195 cttaaccagtgctccgggggcactggttaacatt 19068228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 465
Target Start/End: Original strand, 19116085 - 19116118
Alignment:
Q  432 cttaaccaatgctccgggggcactggttaacatt 465  Q
    |||||||| |||||||||||||||||||||||||    
T  19116085 cttaaccagtgctccgggggcactggttaacatt 19116118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 469
Target Start/End: Original strand, 20471727 - 20471795
Alignment:
Q  400 actttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcc 469  Q
    |||||||||||||| ||||| |  |||||| |||||||||||||||||||  ||  ||||||||||||||    
T  20471727 actttttaataaaaatttactttatttagc-gcttaaccaatgctccgggaacatcggttaacattctcc 20471795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 469
Target Start/End: Complemental strand, 20559810 - 20559742
Alignment:
Q  400 actttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcc 469  Q
    |||||||||||||| ||||| |  |||||| |||||||||||||||||||  ||  ||||||||||||||    
T  20559810 actttttaataaaaatttactttatttagc-gcttaaccaatgctccgggaacatcggttaacattctcc 20559742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 419
Target Start/End: Original strand, 50468835 - 50468900
Alignment:
Q  354 tcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttac 419  Q
    |||| |||| |||| |||| | |||||||||| |||| ||||||| |||||||||||||| |||||    
T  50468835 tcttagaaatataacctgtcattttttattaagtaataattacattactttttaataaaaatttac 50468900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 1e-61; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 294 - 470
Target Start/End: Original strand, 50086601 - 50086776
Alignment:
Q  294 aagggtcttgttaaccagtgccccgagcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattat 393  Q
    |||||||||||||||| |||||| | |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||    
T  50086601 aagggtcttgttaaccggtgccctg-gcacaggttaaggaatccaaaagtagaaaaattgtcttggaaatataaactgttacttttaactaactaattat 50086699  T
Q  394 tacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcct 470  Q
    |||| || ||||||||||||| || ||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50086700 tacaccattttttaataaaatcttgcctcttttagctgcttaaccaatgccccgggggcactggttaacattctcct 50086776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 296 - 473
Target Start/End: Complemental strand, 16072486 - 16072308
Alignment:
Q  296 gggtcttgttaaccagtgccccgag-cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattatt 394  Q
    ||||||||||||||| || || | | |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| | ||||||||||||    
T  16072486 gggtcttgttaaccaatgtccgggggcactggttaacgaatccaaaagtagaaaaattgtcttggaaatataaaccgttacttttgactaactaattatt 16072387  T
Q  395 acatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcctttt 473  Q
    |||||| ||||||||||||| |||||| ||||||||||||||||||||   ||| |||||| ||||||||| |||||||    
T  16072386 acatcattttttaataaaatcttacctcttttagctgcttaaccaatgtctcggcggcacttgttaacattgtcctttt 16072308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 321 - 465
Target Start/End: Original strand, 6480665 - 6480810
Alignment:
Q  321 cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacc 420  Q
    |||||||||| |||||||||| || ||||| | ||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||| |||||    
T  6480665 cactggttaatgaatccaaaactaaaaaaaatatcttgaaaatataaactgttattttttactaactaattattacatcactttttaattaaatcttacc 6480764  T
Q  421 t-attttagctgcttaaccaatgctccgggggcactggttaacatt 465  Q
    |  ||||||||||||||||||| |||||||  || |||||||||||    
T  6480765 tctttttagctgcttaaccaatactccgggaacattggttaacatt 6480810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 320 - 470
Target Start/End: Original strand, 40161028 - 40161177
Alignment:
Q  320 gcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttac 419  Q
    ||||||||||||||||| ||||||| ||||||| ||||| ||| |||||| |||| |||| | |  |||||||||||| |||||||||||||||| ||||    
T  40161028 gcactggttaaggaatctaaaagtaaaaaaattatcttgaaaatataaaccgttatttttgactgcctaattattacaccactttttaataaaatcttac 40161127  T
Q  420 ctattttagctgcttaaccaatgctccgggggcactggttaacattctcct 470  Q
    || ||||| |||||||| ||||| ||| ||||||| |||||||||||||||    
T  40161128 ctcttttacctgcttaatcaatg-tccaggggcaccggttaacattctcct 40161177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 324 - 443
Target Start/End: Complemental strand, 30116861 - 30116742
Alignment:
Q  324 tggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctat 423  Q
    ||||||| ||||| ||||||| ||||||||||||||||| |||||  |||| |||| ||||||||||||||| |||| ||||||||||||| |||||||     
T  30116861 tggttaatgaatctaaaagtaaaaaaattgtcttggaaatataaatcgttatttttgattaactaattattatatcattttttaataaaatcttacctag 30116762  T
Q  424 tttagctgcttaaccaatgc 443  Q
    |||| ||  |||||||||||    
T  30116761 tttaactatttaaccaatgc 30116742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 324 - 415
Target Start/End: Complemental strand, 27655421 - 27655328
Alignment:
Q  324 tggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttacttttt--attaactaattattacatcactttttaataaaatt 415  Q
    |||||||||||| | ||||||||||||||||||| |||| |||||||||||||||||  | ||||||||||||||| |||||||||||||||||    
T  27655421 tggttaaggaatgctaaagtagaaaaattgtcttagaaatataaactgttacttttttgactaactaattattacaccactttttaataaaatt 27655328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 327 - 441
Target Start/End: Original strand, 49649889 - 49650003
Alignment:
Q  327 ttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctatttt 426  Q
    ||||||||||||||| || ||||||| | ||||||| |||||| ||||||||| | |||||||||||||||| ||||||||||||||| ||| || ||||    
T  49649889 ttaaggaatccaaaaataaaaaaattatgttggaaatataaacggttacttttgactaactaattattacataactttttaataaaatattatctctttt 49649988  T
Q  427 agctgcttaaccaat 441  Q
    |  ||||||||||||    
T  49649989 aattgcttaaccaat 49650003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 354 - 443
Target Start/End: Complemental strand, 41377286 - 41377197
Alignment:
Q  354 tcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgc 443  Q
    |||| |||| |||||| ||||||||| | |||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||    
T  41377286 tcttagaaatataaaccgttacttttgactaactaattattgcatcactttttaataaaattttacctcttttaactacttaaccaatgc 41377197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 325 - 416
Target Start/End: Complemental strand, 42810478 - 42810387
Alignment:
Q  325 ggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattt 416  Q
    |||||| |||| ||||||||||||||||||||| |||| ||||||||||| |||| |  ||||||| |||||||||||||| ||||||||||    
T  42810478 ggttaaagaattcaaaagtagaaaaattgtcttagaaatataaactgttatttttgacaaactaataattacatcacttttcaataaaattt 42810387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 327 - 442
Target Start/End: Complemental strand, 50095367 - 50095252
Alignment:
Q  327 ttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctatttt 426  Q
    |||||||||  ||||||| ||||||||| ||| ||| | ||||| |||||||| | ||||||||||||||   | ||||||||||||||||| || ||||    
T  50095367 ttaaggaatttaaaagtaaaaaaattgttttgaaaatacaaactattacttttaactaactaattattacgatattttttaataaaattttatctttttt 50095268  T
Q  427 agctgcttaaccaatg 442  Q
    | ||||||||||||||    
T  50095267 aactgcttaaccaatg 50095252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 321 - 398
Target Start/End: Complemental strand, 21416282 - 21416205
Alignment:
Q  321 cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacat 398  Q
    ||||| |||| ||||||||||||||||||||||| ||||||| |||||  ||||||||| | ||||||||||||||||    
T  21416282 cactgattaaagaatccaaaagtagaaaaattgtattggaaatataaaaggttacttttgactaactaattattacat 21416205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 442
Target Start/End: Original strand, 14815371 - 14815480
Alignment:
Q  334 atccaaaagtagaaaaa-ttgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgc 432  Q
    ||||||||||||||||| |||| ||||||| |||| || ||| |||| |  |||||||||| ||| ||  |||||||||||| |||| | ||||||||||    
T  14815371 atccaaaagtagaaaaaattgtgttggaaatataaccttttatttttgaccaactaattatcacaccagcttttaataaaatcttacttcttttagctgc 14815470  T
Q  433 ttaaccaatg 442  Q
    ||||||||||    
T  14815471 ttaaccaatg 14815480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 384 - 448
Target Start/End: Complemental strand, 21416192 - 21416128
Alignment:
Q  384 aactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgg 448  Q
    ||||||||||||||||| ||||||||||||| |||||| |||||  |||||||||||| ||||||    
T  21416192 aactaattattacatcattttttaataaaatcttacctcttttaaatgcttaaccaattctccgg 21416128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 299 - 421
Target Start/End: Original strand, 31241923 - 31242047
Alignment:
Q  299 tcttgttaaccagtgccccgagc-actggttaaggaatccaaaagtagaaaaat-tgtcttggaaacataaactgttactttttattaactaattattac 396  Q
    |||||||||||  |||||||||  ||||||||||||||| | || |||||   | ||||||| ||| |||||| || |||||||||||| |||| |||||    
T  31241923 tcttgttaaccgatgccccgagatactggttaaggaatctataaatagaattttctgtcttgaaaatataaacggtcactttttattaaataataattac 31242022  T
Q  397 atcactttttaataaaattttacct 421  Q
    || |||||||||||||| |||||||    
T  31242023 attactttttaataaaaatttacct 31242047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 471
Target Start/End: Complemental strand, 31647808 - 31647690
Alignment:
Q  352 tgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccggggg 451  Q
    |||||| |||| ||||||| | ||||||||| || |||| ||||||| ||||||||||||||  |||  | |||| | |||||||||||| |  ||||||    
T  31647808 tgtcttagaaatataaactatcactttttatcaagtaataattacattactttttaataaaaacttatttctttt-ggtgcttaaccaatacctcggggg 31647710  T
Q  452 cactggttaacattctcctt 471  Q
    ||| ||||||||||||||||    
T  31647709 caccggttaacattctcctt 31647690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 38320145 - 38320206
Alignment:
Q  352 tgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaa 413  Q
    ||||||||||| ||||||||| |||| ||||||| |||| ||||||| ||||||||||||||    
T  38320145 tgtcttggaaatataaactgtcacttcttattaagtaataattacattactttttaataaaa 38320206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 467
Target Start/End: Complemental strand, 22280394 - 22280312
Alignment:
Q  384 aactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattct 467  Q
    |||||||||||||| ||| |||||||||||| |||| | ||||  || |||||||||||| |  ||||||||| ||||||||||    
T  22280394 aactaattattacaccacattttaataaaatcttacttcttttgtctacttaaccaatgc-ctaggggcactgattaacattct 22280312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 469
Target Start/End: Complemental strand, 27284187 - 27284042
Alignment:
Q  324 tggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctat 423  Q
    ||||||||||||| | |  ||||||  |||||||||||| ||||  |||||||||| || || |||| ||| ||  ||||||| ||||||  |||  |||    
T  27284187 tggttaaggaatctacatatagaaattttgtcttggaaatataagatgttacttttgatcaaataatgattgcacaacttttttataaaaacttatttat 27284088  T
Q  424 tttagctgcttaaccaatgctccgggggcactggttaacattctcc 469  Q
    ||| | || ||||||||||| |  |||| ||| |||||||||||||    
T  27284087 tttggatgtttaaccaatgcccttggggtactcgttaacattctcc 27284042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 406
Target Start/End: Original strand, 41142262 - 41142374
Alignment:
Q  296 gggtcttgttaaccagtgcccc--gagcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattat 393  Q
    ||||||||||||||||||||||  | ||| |||||||||||| ||  | || |||  |||||||| ||| ||||  | |||||||| ||||| |||| ||    
T  41142262 gggtcttgttaaccagtgcccccggggcattggttaaggaattcatgaataaaaattttgtcttgaaaaaataaggtcttacttttgattaaataataat 41142361  T
Q  394 tacatcacttttt 406  Q
    ||||| |||||||    
T  41142362 tacattacttttt 41142374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 296 - 471
Target Start/End: Original strand, 17900713 - 17900890
Alignment:
Q  296 gggtcttgttaaccagtgccccg--agcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattat 393  Q
    ||||||||||||||||||||||   | ||| |||||||||||||||||||||||||||||||||||| | ||||||| |||||||| | |||||||||||    
T  17900713 gggtcttgttaaccagtgcccctgaaacaccggttaaggaatccaaaagtagaaaaattgtcttggagatataaactcttacttttgactaactaattat 17900812  T
Q  394 tacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcctt 471  Q
    |||| |||||||||||||||| |||||| ||||| ||||||||||||| |  ||||||||||||||||||||||||||    
T  17900813 tacaccactttttaataaaatcttacctcttttaactgcttaaccaatacctcgggggcactggttaacattctcctt 17900890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 296 - 448
Target Start/End: Complemental strand, 11102044 - 11101891
Alignment:
Q  296 gggtcttgttaaccagtgccccgag-cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattatt 394  Q
    ||||||||||||||| ||||| | | |||||||||||||||||||||||||||||||| ||||  ||| |||||| ||||||||| | ||||||||||||    
T  11102044 gggtcttgttaaccaatgcccagggacactggttaaggaatccaaaagtagaaaaattatcttaaaaatataaacagttacttttgactaactaattatt 11101945  T
Q  395 acatcactttttaataaaattttacctattttagctgcttaaccaatgctccgg 448  Q
    | |  ||||||||||||||| |||||| |||||| |||||||||||||||||||    
T  11101944 aaactactttttaataaaatcttacctcttttagttgcttaaccaatgctccgg 11101891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 293 - 468
Target Start/End: Original strand, 22297543 - 22297719
Alignment:
Q  293 taagggtcttgttaaccagtgcccc-gag-cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaat 390  Q
    ||||||||||||||||| || |||| ||| |||||||||| |||| || ||||||||||||||||||| ||| |||||  ||||||||| |  |||||||    
T  22297543 taagggtcttgttaaccggtacccctgaggcactggttaaagaattcagaagtagaaaaattgtcttgaaaatataaatcgttacttttgacaaactaat 22297642  T
Q  391 tattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctc 468  Q
    ||||||| ||||||| ||||||||||||| | ||||||||||||||||||||| || | |||||||||||||||||||    
T  22297643 tattacaccactttt-aataaaattttacttcttttagctgcttaaccaatgccccagaggcactggttaacattctc 22297719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 322 - 441
Target Start/End: Complemental strand, 19418712 - 19418593
Alignment:
Q  322 actggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacct 421  Q
    ||||||||||||||||||||||| ||||||||||||  ||| |||||||||||||||| |  | ||||||||||||||||||||||||||||| |||| |    
T  19418712 actggttaaggaatccaaaagtaaaaaaattgtcttaaaaatataaactgttacttttgaccagctaattattacatcactttttaataaaatcttactt 19418613  T
Q  422 attttagctgcttaaccaat 441  Q
     |||| | ||||||||||||    
T  19418612 cttttggatgcttaaccaat 19418593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 299 - 471
Target Start/End: Original strand, 26608878 - 26609051
Alignment:
Q  299 tcttgttaaccagtgccccgag--cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattac 396  Q
    |||||||||||||||| ||| |  |||  ||||||||||| |||| || |||| |||||||| ||| |||||||||||||||| | || |||||||||||    
T  26608878 tcttgttaaccagtgctccggggacacaagttaaggaatctaaaaata-aaaagttgtcttgaaaatataaactgttacttttgactagctaattattac 26608976  T
Q  397 atcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcctt 471  Q
    |||||||||||||||||| ||| || ||||| ||||||||||||||||| ||  ||||  ||||||||| |||||    
T  26608977 atcactttttaataaaatcttatctcttttaactgcttaaccaatgctctggaagcacatgttaacattgtcctt 26609051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 333 - 467
Target Start/End: Complemental strand, 10253072 - 10252938
Alignment:
Q  333 aatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgc 432  Q
    |||| ||||||||||||| ||||||| ||| ||||||||||| |||| | |||||||||||||||||| ||||||||||||| |||| | |||| | |||    
T  10253072 aatctaaaagtagaaaaactgtcttgaaaatataaactgttatttttgactaactaattattacatcattttttaataaaatcttacttcttttggttgc 10252973  T
Q  433 ttaaccaatgctccgggggcactggttaacattct 467  Q
    ||||||||| |  ||| | ||| ||||||||||||    
T  10252972 ttaaccaatacctcggagacaccggttaacattct 10252938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 320 - 445
Target Start/End: Complemental strand, 31578001 - 31577876
Alignment:
Q  320 gcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttac 419  Q
    ||||||||||||||||| ||||||| ||||| | | ||  ||| ||||| ||||||||||||  |||||||||| ||| | ||||| |||||||| |||     
T  31578001 gcactggttaaggaatctaaaagtaaaaaaactatattataaatataaattgttactttttaccaactaattatcacaccgcttttaaataaaatattaa 31577902  T
Q  420 ctattttagctgcttaaccaatgctc 445  Q
     | ||||| || ||||| ||||||||    
T  31577901 ttcttttaactacttaagcaatgctc 31577876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 442
Target Start/End: Complemental strand, 10008340 - 10008190
Alignment:
Q  293 taagggtcttgttaaccagtgcccc--gagcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaat 390  Q
    ||||||||||| ||||||||| ||   || ||||| |||||||||| ||||  |||||  |||||||  ||| |||||| ||||||||| || || ||||    
T  10008340 taagggtcttgctaaccagtgtcctttgaacactgattaaggaatctaaaaa-agaaattttgtcttaaaaatataaacggttacttttgatcaagtaat 10008242  T
Q  391 tattacatcactttttaataaaattttacctattttagctgcttaaccaatg 442  Q
     |||||| |||||||||||||||  |||| | |||| | |||||||||||||    
T  10008241 aattacaccactttttaataaaaacttacttcttttggttgcttaaccaatg 10008190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 384 - 443
Target Start/End: Original strand, 1970905 - 1970964
Alignment:
Q  384 aactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgc 443  Q
    |||||||||||||| |  |||||||||||||||||| | ||||| |||||||||||||||    
T  1970905 aactaattattacacctttttttaataaaattttacttcttttacctgcttaaccaatgc 1970964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 17506349 - 17506292
Alignment:
Q  356 ttggaaacataaactgttactttttattaactaattattacatcactttttaataaaa 413  Q
    ||||||| ||||||||| ||||||||| || |||| ||||||| ||||||||||||||    
T  17506349 ttggaaatataaactgtcactttttatcaagtaataattacattactttttaataaaa 17506292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 469
Target Start/End: Original strand, 21809802 - 21809948
Alignment:
Q  322 actggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacct 421  Q
    |||||||||| |||| | || |||||   ||||||| |||| ||||| ||| ||||||||| || |||| ||||| | ||||||||||||||  |||  |    
T  21809802 actggttaagaaatctataaatagaattgttgtcttagaaatataaattgtcactttttatcaagtaataattacgttactttttaataaaaacttattt 21809901  T
Q  422 attttagctgcttaaccaatgctccgggggcactggttaacattctcc 469  Q
      |||||| |||||||||||||||| ||  ||| |||||| |||||||    
T  21809902 tatttagc-gcttaaccaatgctccaggaacaccggttaaaattctcc 21809948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 419
Target Start/End: Original strand, 29403599 - 29403646
Alignment:
Q  372 ttactttttattaactaattattacatcactttttaataaaattttac 419  Q
    |||||||||| ||| ||||||||||| |||||||||||||||| ||||    
T  29403599 ttactttttagtaattaattattacaccactttttaataaaatattac 29403646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 406
Target Start/End: Complemental strand, 6770982 - 6770867
Alignment:
Q  293 taagggtcttgttaaccagtgccccgag--cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaat 390  Q
    ||||||||||| ||||||||||||  ||  || ||||||||||| | | || ||||||| || ||||| ||| ||||| | | |||||| ||||| ||||    
T  6770982 taagggtcttgctaaccagtgcccttagggcattggttaaggaaactataaatagaaaatttatcttgaaaatataaattttgacttttgattaaataat 6770883  T
Q  391 tattacatcacttttt 406  Q
     ||||||| |||||||    
T  6770882 aattacataacttttt 6770867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 4e-52; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 300 - 471
Target Start/End: Complemental strand, 19778058 - 19777887
Alignment:
Q  300 cttgttaaccagtgccccg-agcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacat 398  Q
    |||||||| |||||| ||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||    
T  19778058 cttgttaatcagtgctccggagcactggttaaggaatccaaaagtagaaaaattatcttgaaaatataaactgttattttttattaactaattattacat 19777959  T
Q  399 cactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcctt 471  Q
    |||| ||||||||||| |||||| |||||||||||||| |||| | || || |||||||||||||||||||||    
T  19777958 cactctttaataaaatcttacctcttttagctgcttaatcaatac-cctggagcactggttaacattctcctt 19777887  T

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Target: chr7; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 325 - 470
Target Start/End: Original strand, 26203018 - 26203162
Alignment:
Q  325 ggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctatt 424  Q
    ||||||||||||||||||||||||||||||||||||||  ||| | || |||||| | ||||||||||||||| ||||||||||||||||||||||| ||    
T  26203018 ggttaaggaatccaaaagtagaaaaattgtcttggaaatctaaccagtcacttttgactaactaattattacaccactttttaataaaattttacctctt 26203117  T
Q  425 ttagctgcttaaccaatgctccgggggcactggttaacattctcct 470  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||    
T  26203118 ttagttgcttaaccaatgc-ccgggggcactggttaacattctcct 26203162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 298 - 473
Target Start/End: Original strand, 7833714 - 7833891
Alignment:
Q  298 gtcttgttaaccagtgccccgag--cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattatta 395  Q
    |||||||||| |||||||||  |  |||| |||| ||||||| |||||||||||||||||||| ||| ||||||||||| |||| |  |||||||||||     
T  7833714 gtcttgttaatcagtgcccccgggacactagttatggaatcccaaagtagaaaaattgtcttgaaaatataaactgttatttttgaccaactaattattg 7833813  T
Q  396 catcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcctttt 473  Q
    ||  ||||||||||||||| |||| | |||| |||||||||||||||| |  |||||| |||||||||||||||||||    
T  7833814 cactactttttaataaaatcttacttgttttggctgcttaaccaatgccctcggggcattggttaacattctcctttt 7833891  T

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Target: chr7; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 295 - 432
Target Start/End: Original strand, 1703841 - 1703980
Alignment:
Q  295 agggtcttgttaaccagtgccccgag--cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaatta 392  Q
    ||||||||||||||||||| | || |  || |||| ||||||| |||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||    
T  1703841 agggtcttgttaaccagtgtctcgggggcattggtcaaggaattcaaaagtagaaaaattgtctcggaaatataaactgttacttttgactaactaatta 1703940  T
Q  393 ttacatcactttttaataaaattttacctattttagctgc 432  Q
    |||||  ||||||||||||||| |||||| ||||||||||    
T  1703941 ttacacaactttttaataaaatcttacctcttttagctgc 1703980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 318 - 439
Target Start/End: Original strand, 11740353 - 11740474
Alignment:
Q  318 gagcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaatttt 417  Q
    |||||||| |||||||||| || | |||||||||||||||| ||| |||||||||||||||| || |||||||||||||| |||||||||||||||||||    
T  11740353 gagcactgattaaggaatctaataatagaaaaattgtcttgaaaatataaactgttacttttgatcaactaattattacaccactttttaataaaatttt 11740452  T
Q  418 acctattttagctgcttaacca 439  Q
    || | ||||  |||||||||||    
T  11740453 acttcttttgcctgcttaacca 11740474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 321 - 469
Target Start/End: Complemental strand, 48984492 - 48984345
Alignment:
Q  321 cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacc 420  Q
    |||| |||||| |||  ||||| ||||||||| | ||| |||||| ||| ||||||||| | ||||||||||||||| |||||||||||||||| |||||    
T  48984492 cactagttaagaaatttaaaagaagaaaaattattttgaaaacattaacggttactttt-actaactaattattacaccactttttaataaaatcttacc 48984394  T
Q  421 tattttagctgcttaaccaatgctccgggggcactggttaacattctcc 469  Q
    | ||||| ||||||||||||| | || ||| ||| ||||||||||||||    
T  48984393 tcttttaactgcttaaccaattccccagggacaccggttaacattctcc 48984345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 352 - 473
Target Start/End: Complemental strand, 41434788 - 41434671
Alignment:
Q  352 tgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccggggg 451  Q
    |||||| |||| ||||||||| ||||||||| || |||| ||||||| | |||||||||||| |||||   |||||| || ||||||||||||||||| |    
T  41434788 tgtcttagaaatataaactgtcactttttatcaaataataattacattattttttaataaaaatttac---ttttag-tgtttaaccaatgctccgggag 41434693  T
Q  452 cactggttaacattctcctttt 473  Q
    |  |||||||||||||||||||    
T  41434692 ccttggttaacattctcctttt 41434671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 352 - 470
Target Start/End: Original strand, 8117470 - 8117587
Alignment:
Q  352 tgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccggggg 451  Q
    ||||||| ||| ||||| ||||| |||||||||| |||| ||||||| ||||||||||||||  |||| |  |||||| | ||||||||||| ||||||     
T  8117470 tgtcttgaaaatataaattgttattttttattaaataataattacattactttttaataaaaacttacttcatttagc-gtttaaccaatgccccggggt 8117568  T
Q  452 cactggttaacattctcct 470  Q
    ||||| |||||||||||||    
T  8117569 cactgattaacattctcct 8117587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 293 - 471
Target Start/End: Original strand, 45907001 - 45907178
Alignment:
Q  293 taagggtcttgttaaccagtgccccgagcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaatta 392  Q
    |||||||||||| ||| |  |||| | |||| |||||||||||| | || ||||    |||||||| ||| ||||||||| ||||||||| || |||| |    
T  45907001 taagggtcttgtaaactatggcccggggcacgggttaaggaatctataaatagattttttgtcttgtaaatataaactgtcactttttatcaagtaataa 45907100  T
Q  393 ttacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcctt 471  Q
    |||||| ||||||||||||||  |||| | ||||   ||||||||||||   |||||| ||||||||||||||||||||    
T  45907101 ttacattactttttaataaaaacttacttctttt-tatgcttaaccaatatcccggggacactggttaacattctcctt 45907178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 293 - 397
Target Start/End: Original strand, 11736099 - 11736207
Alignment:
Q  293 taagggtcttgttaaccagtg---ccccga-gcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaacta 388  Q
    |||||||||||||||| ||||   |||||| ||| || |||||||||  ||||||||||||||| |||| |||| |||||| ||||||||| |  |||||    
T  11736099 taagggtcttgttaacgagtgtgtccccgaagcaatgattaaggaatttaaaagtagaaaaattatcttagaaatataaaccgttacttttgaccaacta 11736198  T
Q  389 attattaca 397  Q
    |||||||||    
T  11736199 attattaca 11736207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 11736224 - 11736281
Alignment:
Q  384 aactaattattacatcactttttaataaaattttacctattttagctgcttaaccaat 441  Q
    |||||||||||||| |||||||||||||||| |||| | |||| ||||||||||||||    
T  11736224 aactaattattacaccactttttaataaaatcttacttcttttggctgcttaaccaat 11736281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 413
Target Start/End: Complemental strand, 16861764 - 16861703
Alignment:
Q  352 tgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaa 413  Q
    ||||||||||| ||||||||| | |||||||||| || | ||||||| ||||||||||||||    
T  16861764 tgtcttggaaatataaactgtcattttttattaaatattaattacattactttttaataaaa 16861703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 413
Target Start/End: Complemental strand, 22035819 - 22035758
Alignment:
Q  352 tgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaa 413  Q
    ||||||||||| ||||||||| |||||||| ||| |||| ||||||| | ||||||||||||    
T  22035819 tgtcttggaaatataaactgtcactttttaataagtaataattacattattttttaataaaa 22035758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 419
Target Start/End: Original strand, 3624254 - 3624317
Alignment:
Q  356 ttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttac 419  Q
    ||||||| |||| || ||| ||||||| || ||||||||||| |||||||||||||||| ||||    
T  3624254 ttggaaatataagcttttattttttatcaaataattattacaccactttttaataaaatcttac 3624317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 441
Target Start/End: Complemental strand, 33194810 - 33194720
Alignment:
Q  351 ttgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaat 441  Q
    |||||||  ||| ||||||| | || ||| ||||| |||| ||||||  |||||||| ||||| ||||| |||||||| ||||||||||||    
T  33194810 ttgtcttaaaaatataaactatcacatttgattaagtaatgattacactactttttattaaaaatttacttattttagttgcttaaccaat 33194720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 469
Target Start/End: Complemental strand, 24937976 - 24937802
Alignment:
Q  296 gggtcttgttaaccagtgccccgag--cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattat 393  Q
    |||||||| ||||||||||||  ||  || ||||||||||| | | || ||||||| |||| ||  ||| ||| | | | |||||| ||||| |||| ||    
T  24937976 gggtcttgctaaccagtgccctcagggcaatggttaaggaaactataaatagaaaatttgttttaaaaatatagattttgacttttaattaagtaataat 24937877  T
Q  394 tacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcc 469  Q
    |||| ||||||||| |||||  |||| |||||| | | |||||||||||| | | |||||| | ||||||||||||    
T  24937876 tacaccacttttta-taaaaagttacttattttggttccttaaccaatgccctgagggcaccgtttaacattctcc 24937802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 296 - 473
Target Start/End: Complemental strand, 29458179 - 29458000
Alignment:
Q  296 gggtcttgttaaccagtgccccga--gcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattat 393  Q
    ||||||||||||| |||||||||   ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| | |||||||||||    
T  29458179 gggtcttgttaactagtgccccggaggcactggttaaggaatctaaaagtagaaaaattgtcttggaaatataaactgttatttttgactaactaattat 29458080  T
Q  394 tacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcctttt 473  Q
    |||| |||||||||||||||| ||| || |||||||||||||| |||||| |   ||||||||||||| |||||| ||||    
T  29458079 tacaccactttttaataaaatattatctcttttagctgcttaatcaatgccctcagggcactggttaatattctcttttt 29458000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 327 - 471
Target Start/End: Complemental strand, 20585917 - 20585773
Alignment:
Q  327 ttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctatttt 426  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||    
T  20585917 ttaaggaattcaaaagtagaaaaattgttttggaaatataaactgttacttttgattaactaattattacaccactttttaataaaatcttacctctttt 20585818  T
Q  427 agctgcttaaccaatgctccgggggcactggttaacattctcctt 471  Q
    || | |||||| ||||| |  ||||||||||||||||||||||||    
T  20585817 agttacttaacgaatgccctaggggcactggttaacattctcctt 20585773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 325 - 470
Target Start/End: Original strand, 26835696 - 26835841
Alignment:
Q  325 ggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctatt 424  Q
    ||||||||||| |||||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| || ||    
T  26835696 ggttaaggaattcaaaagtagaaaaattgtcttgaaaatataaattgttacttttgattaactaattattatatcactttttaataaaattttaactctt 26835795  T
Q  425 ttagctgcttaaccaatgctccgggggcactggttaacattctcct 470  Q
    ||||||||||||||||||| |||||  ||| |||||| ||| ||||    
T  26835796 ttagctgcttaaccaatgcgccgggaacacgggttaatattgtcct 26835841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 293 - 469
Target Start/End: Original strand, 44291196 - 44291372
Alignment:
Q  293 taagggtcttgttaaccagtgccccgag-cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaatt 391  Q
    |||||||||||||||||||||||||| | |||||||||||||||| | || |||||    ||||||||||| ||||||||| |||||||||||| ||||     
T  44291196 taagggtcttgttaaccagtgccccggggcactggttaaggaatctataaatagaatttctgtcttggaaatataaactgtcactttttattaagtaata 44291295  T
Q  392 attacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcc 469  Q
    ||||||| |||||||||||||   |||| | |||| | |||||||||||||| |||||||||||||||||||||||||    
T  44291296 attacattactttttaataaatacttacttctttt-ggtgcttaaccaatgccccgggggcactggttaacattctcc 44291372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 297 - 471
Target Start/End: Original strand, 49452577 - 49452751
Alignment:
Q  297 ggtcttgttaaccagtgccccgag-cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattatta 395  Q
    ||||||||||||||||| |||| | || ||||||| ||||| ||| ||||||||||||| ||| ||| ||||||||||| |||| | |||||||||||||    
T  49452577 ggtcttgttaaccagtgtcccggggcattggttaaagaatctaaatgtagaaaaattgttttgaaaatataaactgtta-ttttgactaactaattatta 49452675  T
Q  396 catcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcctt 471  Q
    ||||| ||||||||||| | |||||| ||||| |||||||||||||||| ||||| ||||| |||||||| |||||    
T  49452676 catcattttttaataaattcttacctcttttaactgcttaaccaatgcttcggggacactgattaacattgtcctt 49452751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 373 - 471
Target Start/End: Complemental strand, 32961247 - 32961150
Alignment:
Q  373 tactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcctt 471  Q
    ||||||||| ||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| || ||||||||  ||||||||||||||    
T  32961247 tactttttactaactaattattacaccactttttaataaaatcttacctcttttagctgcttaaccaatgc-cccggggcactaattaacattctcctt 32961150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 326 - 447
Target Start/End: Complemental strand, 45054500 - 45054379
Alignment:
Q  326 gttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattt 425  Q
    |||||| ||| |||||||||||||||||| || |||| |||||||||||||||| | |||||||||||||||  | ||||||||||||| |||| | |||    
T  45054500 gttaagaaattcaaaagtagaaaaattgtgttagaaatataaactgttacttttgactaactaattattacactattttttaataaaatcttacttcttt 45054401  T
Q  426 tagctgcttaaccaatgctccg 447  Q
    || ||| |||||||||||||||    
T  45054400 taactgtttaaccaatgctccg 45054379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 297 - 442
Target Start/End: Complemental strand, 14622238 - 14622091
Alignment:
Q  297 ggtcttgttaaccagtgccccg--agcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattatt 394  Q
    ||||||||||||| ||||| |   ||||| ||||||||||||||||| |||||||||||| ||| ||| ||||| |||||||||| |  |||||||| |     
T  14622238 ggtcttgttaaccggtgcctctgaagcacgggttaaggaatccaaaaatagaaaaattgtattgaaaatataaattgttacttttgaccaactaattttc 14622139  T
Q  395 acatcactttttaataaaattttacctattttagctgcttaaccaatg 442  Q
    ||| ||||||| |||||||| |||| | |||||||| |||||| ||||    
T  14622138 acaccacttttcaataaaatattacttcttttagctacttaactaatg 14622091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 318 - 469
Target Start/End: Complemental strand, 35483716 - 35483565
Alignment:
Q  318 gagcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaatttt 417  Q
    ||||| || ||||||||| |||||||||||||| ||||||  ||| ||||||| |||||||| || |||||||||||||  |||| ||||||||||| ||    
T  35483716 gagcattgattaaggaattcaaaagtagaaaaactgtcttacaaatataaacttttacttttgatcaactaattattactccactctttaataaaatctt 35483617  T
Q  418 acctattttagctgcttaaccaatgctccgggggcactggttaacattctcc 469  Q
    |    || | |||| ||||||||||| || | ||||| ||||||||||||||    
T  35483616 attacttctggctgtttaaccaatgccccagaggcaccggttaacattctcc 35483565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 326 - 445
Target Start/End: Original strand, 30863626 - 30863747
Alignment:
Q  326 gttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttac--ctat 423  Q
    |||||||||| |||||||||||||||||||||  ||| ||||| ||||| |||| | |||| |||||||||| ||||||| |||||||| ||||  || |    
T  30863626 gttaaggaattcaaaagtagaaaaattgtcttcaaaatataaattgttatttttaactaacaaattattacaccacttttcaataaaatcttacaacttt 30863725  T
Q  424 tttagctgcttaaccaatgctc 445  Q
    ||||  ||||||||||||||||    
T  30863726 tttaattgcttaaccaatgctc 30863747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 32961582 - 32961504
Alignment:
Q  298 gtcttgttaaccagtgccccgagcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttact 376  Q
    ||||||||||| |||||||   |||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  32961582 gtcttgttaactagtgccctaggcacgggttaaggaatccaaaagtagaaaaattatcttggaaatataaactgttact 32961504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 352 - 472
Target Start/End: Complemental strand, 43863028 - 43862909
Alignment:
Q  352 tgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccggggg 451  Q
    ||||||||||| ||||||||| ||| |||||||| |||| ||||||| ||||||||||||||  |||| |  ||| |  ||||||||||||| || ||||    
T  43863028 tgtcttggaaatataaactgtcactctttattaagtaataattacattactttttaataaaaacttacttcattt-ggggcttaaccaatgccccagggg 43862930  T
Q  452 cactggttaacattctccttt 472  Q
    ||| |||||||||||||||||    
T  43862929 caccggttaacattctccttt 43862909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 320 - 471
Target Start/End: Original strand, 15671111 - 15671261
Alignment:
Q  320 gcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttac 419  Q
    ||||||||||||||||| | || || ||   ||||||| |||| ||||||||| ||||||||| || |||| ||||||| ||||||||||||||  ||||    
T  15671111 gcactggttaaggaatctataaataaaatttttgtcttcgaaatataaactgtcactttttatcaagtaataattacattactttttaataaaaacttac 15671210  T
Q  420 ctattttagctgcttaaccaatgctccgggggcactggttaacattctcctt 471  Q
     |  ||| | | ||||||||||||||||   | |||||||||||||||||||    
T  15671211 ttcattt-ggttcttaaccaatgctccgtatgtactggttaacattctcctt 15671261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 352 - 472
Target Start/End: Original strand, 42163633 - 42163752
Alignment:
Q  352 tgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccggggg 451  Q
    ||||||||||| |||||| || |||||||||||| |||| ||||||| ||||||||||||||  |||| |  ||| | ||  |||||||||| |||| ||    
T  42163633 tgtcttggaaatataaaccgtcactttttattaagtaataattacattactttttaataaaaacttacttcattt-ggtgtgtaaccaatgccccggagg 42163731  T
Q  452 cactggttaacattctccttt 472  Q
    ||| ||||||||||| |||||    
T  42163732 caccggttaacattccccttt 42163752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 354 - 419
Target Start/End: Original strand, 17109563 - 17109628
Alignment:
Q  354 tcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttac 419  Q
    ||||||||| ||||||||| || ||||||||| |||| ||||||| |||||||||||||| |||||    
T  17109563 tcttggaaatataaactgtaacattttattaagtaataattacataactttttaataaaaatttac 17109628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 354 - 471
Target Start/End: Original strand, 32720549 - 32720664
Alignment:
Q  354 tcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggca 453  Q
    ||||| ||| ||||||||| ||| |||||||| |||| |||| || | ||||||||||||  |||| || ||||| |||||||||||| ||||  |||||    
T  32720549 tcttgaaaatataaactgtcactatttattaagtaataattatattattttttaataaaaacttacttaatttag-tgcttaaccaatactcc-agggca 32720646  T
Q  454 ctggttaacattctcctt 471  Q
    ||| ||||||||||||||    
T  32720647 ctgattaacattctcctt 32720664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 49419085 - 49419141
Alignment:
Q  359 gaaacataaactgttactttttattaactaattattacatcactttttaataaaatt 415  Q
    |||| ||||| ||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  49419085 gaaatataaattgtcactttttattaactaataattacataactttttaataaaatt 49419141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 294 - 469
Target Start/End: Original strand, 42437682 - 42437857
Alignment:
Q  294 aagggtcttgttaaccagtgccccgag--cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaatt 391  Q
    |||||||||| ||||||||||||  ||  || |||||||||| || | || ||||||  || ||||||||  ||||  |||||||||| ||    ||||     
T  42437682 aagggtcttgataaccagtgccctcagggcaatggttaaggattctacaaatagaaattttatcttggaattataagatgttacttttgatcg--taatg 42437779  T
Q  392 attacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcc 469  Q
    ||||||| ||||||| |||||||||| | | |||| | |||||||||||||| |  ||||||||||||| ||||||||    
T  42437780 attacataactttttcataaaattttgcgtgttttggatgcttaaccaatgcccttggggcactggttagcattctcc 42437857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 410
Target Start/End: Original strand, 44041351 - 44041409
Alignment:
Q  352 tgtcttggaaacataaactgttactttttattaactaattattacatcactttttaata 410  Q
    |||||||| || ||||||||| |||||||||||| |||| ||||||| |||||||||||    
T  44041351 tgtcttggtaatataaactgtcactttttattaagtaataattacattactttttaata 44041409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 413
Target Start/End: Complemental strand, 27144145 - 27144025
Alignment:
Q  296 gggtcttgttaaccagtgccc-cgag-cactggttaaggaatccaaaagtagaaaaat-tgtcttggaaacataaactgttactttttattaactaatta 392  Q
    |||||||||||||| |||||| |||| ||||||||||| |||| | || |||||   | ||| || |||| ||||||||| |||||||||||| |||| |    
T  27144145 gggtcttgttaaccggtgccctcgaggcactggttaagaaatctataaatagaattttctgtattagaaatataaactgtgactttttattaagtaataa 27144046  T
Q  393 ttacatcactttttaataaaa 413  Q
    |||||| | ||||||||||||    
T  27144045 ttacattattttttaataaaa 27144025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 471
Target Start/End: Complemental strand, 36436671 - 36436552
Alignment:
Q  352 tgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccggggg 451  Q
    ||||||| ||| ||||||| ||| |||| || || |||||||| ||  ||||||||||||||| |||  |||||||| || |||||| |||| |  | ||    
T  36436671 tgtcttgtaaatataaacttttatttttgatcaaataattattgcactactttttaataaaatcttatttattttagatgtttaacccatgcccatgagg 36436572  T
Q  452 cactggttaacattctcctt 471  Q
    ||| | ||||||||||||||    
T  36436571 cacggtttaacattctcctt 36436552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 413
Target Start/End: Complemental strand, 35322096 - 35322035
Alignment:
Q  351 ttgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaa 413  Q
    ||||||| |||| ||||||| | |||||||||||| |||| ||||||| ||||||||||||||    
T  35322096 ttgtcttagaaatataaact-tcactttttattaagtaataattacattactttttaataaaa 35322035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 4020213 - 4020140
Alignment:
Q  324 tggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattaca 397  Q
    ||||||||||||| | || ||||||  |||||||| ||| ||||| ||||| |||| ||||| |||||||||||    
T  4020213 tggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttaattttgattaagtaattattaca 4020140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 461
Target Start/End: Original strand, 34681201 - 34681229
Alignment:
Q  433 ttaaccaatgctccgggggcactggttaa 461  Q
    |||||||||||||||||||||||||||||    
T  34681201 ttaaccaatgctccgggggcactggttaa 34681229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 342 - 473
Target Start/End: Original strand, 22266239 - 22266368
Alignment:
Q  342 gtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaat 441  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||  |||||||||||||||| |||||| ||||| |||||||| ||||    
T  22266239 gtagaaaaattgtcttgaaaacataaactgttactttttactaactaattattac--cactttttaataaaatcttacctcttttaactgcttaagcaat 22266336  T
Q  442 gctccgggggcactggttaacattctcctttt 473  Q
    || |||||||||||||||||||||||||||||    
T  22266337 gccccgggggcactggttaacattctcctttt 22266368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 328 - 471
Target Start/End: Complemental strand, 38388634 - 38388490
Alignment:
Q  328 taaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctatttta 427  Q
    |||| |||||||||| ||||||||| ||||||||| ||||||| |||||||| | |||||||||||||||||||||||||||||||| |||||| |||||    
T  38388634 taagaaatccaaaaggagaaaaattatcttggaaatataaactattacttttgactaactaattattacatcactttttaataaaatcttacctctttta 38388535  T
Q  428 gctgcttaaccaatg-ctccgggggcactggttaacattctcctt 471  Q
    ||||||||||| ||| | ||| ||||||||||||||||| |||||    
T  38388534 gctgcttaaccgatgcccccgagggcactggttaacattgtcctt 38388490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 335 - 468
Target Start/End: Original strand, 24757057 - 24757187
Alignment:
Q  335 tccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgctt 434  Q
    ||||||||||||||||||| |||| ||| |||||||||||||||| | |||||||||||||||||||||||||||||||| ||| || ||||||||||||    
T  24757057 tccaaaagtagaaaaattgacttgaaaatataaactgttacttttgactaactaattattacatcactttttaataaaatcttatctcttttagctgctt 24757156  T
Q  435 aaccaatgctccgggggcactggttaacattctc 468  Q
    |||||||| |||   ||||||| |||||||||||    
T  24757157 aaccaatgttcc---ggcactgattaacattctc 24757187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 326 - 443
Target Start/End: Complemental strand, 1988893 - 1988776
Alignment:
Q  326 gttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattt 425  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||||||||| ||||||||||||| | |||||| |||    
T  1988893 gttaaggaatccaaaagtagaaaaattgtcttcgaaatataaactgttacttttgactaactaattattacattactttttaataaattcttacctcttt 1988794  T
Q  426 tagctgcttaaccaatgc 443  Q
    || || ||||| ||||||    
T  1988793 taactccttaatcaatgc 1988776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 299 - 440
Target Start/End: Complemental strand, 34832417 - 34832274
Alignment:
Q  299 tcttgttaaccagtgccccgag--cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattac 396  Q
    ||||||||||||||||| ||||  ||||| |||| ||||| ||||||||||||||| | ||||||| ||||| |||||||||| | ||||||||||||||    
T  34832417 tcttgttaaccagtgcctcgagaacactgattaaagaatctaaaagtagaaaaattattttggaaatataaattgttacttttgactaactaattattac 34832318  T
Q  397 atcactttttaataaaattttacctattttagctgcttaaccaa 440  Q
    | |||||||||||||| ||||| || |||| | |||||||||||    
T  34832317 accactttttaataaatttttaactcttttcgttgcttaaccaa 34832274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 327 - 471
Target Start/End: Complemental strand, 1551607 - 1551464
Alignment:
Q  327 ttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctatttt 426  Q
    |||||||||||||||||||||||||||||||  ||| ||||| |||||||||| |  |||||||||| ||| |||||||||||||||| |||||| ||||    
T  1551607 ttaaggaatccaaaagtagaaaaattgtcttttaaatataaagtgttacttttgaccaactaattatgacaccactttttaataaaatcttacctctttt 1551508  T
Q  427 agctgcttaaccaatgctccgggggcactggttaacattctcctt 471  Q
      |||||||| |||||| || ||| || |||||||||| ||||||    
T  1551507 gactgcttaatcaatgc-cccgggacattggttaacatcctcctt 1551464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 320 - 437
Target Start/End: Complemental strand, 35762408 - 35762292
Alignment:
Q  320 gcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttac 419  Q
    |||||| ||||||||||||||| ||||||||     ||| ||| ||||||||||| |||| ||||| ||||||||||| ||||||||||||||||||| |    
T  35762408 gcactgattaaggaatccaaaaatagaaaaaaaaatttgaaaatataaactgtta-ttttgattaattaattattacaccactttttaataaaattttgc 35762310  T
Q  420 ctattttagctgcttaac 437  Q
    || ||||| |||||||||    
T  35762309 ctcttttaactgcttaac 35762292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 351 - 471
Target Start/End: Complemental strand, 37919487 - 37919368
Alignment:
Q  351 ttgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggg 450  Q
    |||| ||| ||| ||||||||| | |||||||||| |||| ||||||| |||||||||||||| |||| || | || | ||||||||||||||||||| |    
T  37919487 ttgttttgaaaatataaactgtcattttttattaagtaataattacattactttttaataaaaattta-ctttattcggtgcttaaccaatgctccggag 37919389  T
Q  451 gcactggttaacattctcctt 471  Q
    |||| |||||| |||||||||    
T  37919388 gcaccggttaatattctcctt 37919368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 295 - 396
Target Start/End: Original strand, 13904004 - 13904105
Alignment:
Q  295 agggtcttgttaaccagtgccccgag-cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattat 393  Q
    ||||| ||||||||| |||||||| | |||||||||||||||||||||| | ||||||||||||| ||| ||||||||||| |||| |  ||||||||||    
T  13904004 agggttttgttaaccggtgccccggggcactggttaaggaatccaaaagaa-aaaaattgtcttgaaaatataaactgttatttttgaccaactaattat 13904102  T
Q  394 tac 396  Q
    |||    
T  13904103 tac 13904105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 419
Target Start/End: Original strand, 9791862 - 9791953
Alignment:
Q  327 ttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttac 419  Q
    ||||||||||||| | || ||||||||||||| ||| |||||||| || |||| || |||||||||||| |||||||||||||||||| ||||    
T  9791862 ttaaggaatccaagaata-aaaaattgtcttgaaaatataaactgctatttttgatcaactaattattatatcactttttaataaaatcttac 9791953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 320 - 410
Target Start/End: Complemental strand, 37564869 - 37564779
Alignment:
Q  320 gcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaata 410  Q
    ||||||||||||||||| ||||||||||||||| |||| |||| |||  | ||||||||| |  || ||||||||||| ||||||||||||    
T  37564869 gcactggttaaggaatctaaaagtagaaaaattatctttgaaatatatgcggttacttttgaccaattaattattacaccactttttaata 37564779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 469
Target Start/End: Original strand, 39065572 - 39065676
Alignment:
Q  364 ataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaaca 463  Q
    ||||||||| ||||||||| || |||| || |||| | |||||||||||| ||||| | |||||| ||||||||||||||||| | |||||| |||| ||    
T  39065572 ataaactgtcactttttatcaagtaataatgacattattttttaataaaaatttacttcttttag-tgcttaaccaatgctccagaggcactagttagca 39065670  T
Q  464 ttctcc 469  Q
    ||||||    
T  39065671 ttctcc 39065676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 324 - 470
Target Start/End: Complemental strand, 41727011 - 41726865
Alignment:
Q  324 tggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctat 423  Q
    ||||||||||||| | || || |||  |||||||||||| ||||| ||||| ||||||| || |||| |||||||   ||||| ||||||  |||| |||    
T  41727011 tggttaaggaatctacaaataaaaattttgtcttggaaatataaaatgttattttttataaagtaatgattacatagttttttcataaaaacttacttat 41726912  T
Q  424 tttagctgcttaaccaatgctccgggggcactggttaacattctcct 470  Q
    ||||| |||||||||| ||| |   ||||||| |||| |||||||||    
T  41726911 tttagatgcttaaccattgcccttagggcactagttatcattctcct 41726865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 296 - 464
Target Start/End: Original strand, 39534107 - 39534275
Alignment:
Q  296 gggtcttgttaaccagtgcccc-gagcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattatt 394  Q
    |||||||||||||| ||||||| | |||  |||||| ||||| | || |||||    ||||||| ||| ||||||||| ||  ||||| || |||| |||    
T  39534107 gggtcttgttaaccggtgcccccgggcatgggttaaagaatctataattagaatttctgtcttgaaaatataaactgtcaccctttatcaagtaataatt 39534206  T
Q  395 acatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacat 464  Q
    |||| |||||||||||||| |||||||  ||| | |||||||| || || | ||||||||||||||||||    
T  39534207 acattactttttaataaaaatttacctcattt-ggtgcttaactaacgccctgggggcactggttaacat 39534275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 413
Target Start/End: Complemental strand, 20821978 - 20821916
Alignment:
Q  351 ttgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaa 413  Q
    |||||||  ||| ||||| ||| |||||||||||| |||| ||||||| ||||||||||||||    
T  20821978 ttgtcttaaaaatataaattgtcactttttattaagtaataattacattactttttaataaaa 20821916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 405
Target Start/End: Original strand, 28462569 - 28462623
Alignment:
Q  351 ttgtcttggaaacataaactgttactttttattaactaattattacatcactttt 405  Q
    |||||||||||| ||||||| | |||||||||||| |||| ||||||| ||||||    
T  28462569 ttgtcttggaaatataaactatcactttttattaagtaataattacattactttt 28462623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 11475539 - 11475475
Alignment:
Q  110 cctcaaagttacaaaattgctatttagtcccttaacgtgaacaatgtccgtcaatttagtcattt 174  Q
    ||||||| ||||||||| |  ||||||| ||||||  ||||||||||| ||||||||||| ||||    
T  11475539 cctcaaatttacaaaatagaaatttagttccttaagttgaacaatgtctgtcaatttagtaattt 11475475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 14110639 - 14110706
Alignment:
Q  351 ttgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttac 419  Q
    ||||||| |||| |||||| || ||||||||| || |||| ||||||| |||||||||||||| |||||    
T  14110639 ttgtcttagaaatataaaccgtcactttttat-aagtaataattacataactttttaataaaaatttac 14110706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 35467832 - 35467792
Alignment:
Q  293 taagggtcttgttaaccagtgccccgagcactggttaagga 333  Q
    |||||||  ||||||||||||||||| ||||||||||||||    
T  35467832 taagggtaatgttaaccagtgccccgggcactggttaagga 35467792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 467
Target Start/End: Original strand, 38362265 - 38362344
Alignment:
Q  387 taattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattct 467  Q
    |||| |||||||  ||||||||||||| ||||| |  ||| | ||||||||||||||  ||||||||| ||||||||||||    
T  38362265 taataattacattgctttttaataaaaatttactttattt-gatgcttaaccaatgcatcgggggcaccggttaacattct 38362344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 8e-41; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 302 - 470
Target Start/End: Complemental strand, 35501538 - 35501370
Alignment:
Q  302 tgttaaccagtgccccg-agcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatca 400  Q
    |||||||| |||| ||| ||||||||||||||| |||||||||||||||||||  ||||||| ||||||| ||| |||| | ||||||||||||||||||    
T  35501538 tgttaaccggtgctccggagcactggttaaggattccaaaagtagaaaaattgatttggaaatataaacttttatttttgactaactaattattacatca 35501439  T
Q  401 ctttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcct 470  Q
    |||||||||||||| |||| | ||||| ||||||||||||||| |||| |||| || |||||||||||||    
T  35501438 ctttttaataaaatcttacttcttttacctgcttaaccaatgccccggaggca-tgattaacattctcct 35501370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 300 - 470
Target Start/End: Original strand, 19994891 - 19995062
Alignment:
Q  300 cttgttaaccagtgccccgag-cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacat 398  Q
    ||||| ||| ||||||||| | |||||||||| |||||||||| |||||||||| ||||||||| |||||||||||||||| | ||||||||||||||||    
T  19994891 cttgtgaactagtgccccggggcactggttaaagaatccaaaaatagaaaaattatcttggaaatataaactgttacttttgactaactaattattacat 19994990  T
Q  399 cactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcct 470  Q
    ||||||||||||||   |||||| ||||| |||||||||| |||| |||||  ||| |||||||||| ||||    
T  19994991 cactttttaataaatgcttacctcttttaactgcttaaccgatgccccgggaacaccggttaacattgtcct 19995062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 296 - 442
Target Start/End: Original strand, 19606241 - 19606387
Alignment:
Q  296 gggtcttgttaaccagtgccccgagcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattatta 395  Q
    ||||||||||||  ||||||||| |||||||||||  |||||||||||||||||| | | ||||||| |||||||||||||||| || ||||||||||||    
T  19606241 gggtcttgttaataagtgccccgggcactggttaaaaaatccaaaagtagaaaaactattttggaaatataaactgttacttttgatgaactaattatta 19606340  T
Q  396 catcactttttaataaaattttacctattttagctgcttaaccaatg 442  Q
    || |||||||||||||||| |||| | | |||||| |||||||||||    
T  19606341 caccactttttaataaaatcttacatctcttagcttcttaaccaatg 19606387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 320 - 473
Target Start/End: Complemental strand, 43248820 - 43248667
Alignment:
Q  320 gcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttac 419  Q
    |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |  |||||||||||||| || ||||| ||||||| ||||    
T  43248820 gcacaggttaaggaatccaaaagtagaaaaattgtcttagaaatataaactgttacttttgaccaactaattattacaccaatttttgataaaatcttac 43248721  T
Q  420 ctattttagctgcttaaccaatgctccgggggcactggttaacattctcctttt 473  Q
     | ||||| |||| ||||||||| ||| || |||| |||||||||| |||||||    
T  43248720 ttcttttatctgcgtaaccaatgttccaggagcaccggttaacattgtcctttt 43248667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 326 - 473
Target Start/End: Complemental strand, 41385152 - 41385006
Alignment:
Q  326 gttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattt 425  Q
    |||||||||||||||| |||||||||||| ||||||| ||||| |||||||||| |  |||||||||| ||| ||||||| |||||||| |||| | |||    
T  41385152 gttaaggaatccaaaaatagaaaaattgtattggaaatataaattgttacttttgaccaactaattatcacaccacttttcaataaaatattacttcttt 41385053  T
Q  426 tagctgcttaaccaatgctccgggggcactggttaacattctcctttt 473  Q
    ||||||||||||||||||| ||||| ||| |||||||||| |||||||    
T  41385052 tagctgcttaaccaatgct-cggggtcaccggttaacattgtcctttt 41385006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 356 - 471
Target Start/End: Original strand, 16498137 - 16498252
Alignment:
Q  356 ttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcact 455  Q
    ||||||| ||||| ||||| |||| | |||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| | || ||||||    
T  16498137 ttggaaatataaattgttaattttgactaactaattattacatcactttttaataaaatcttacctcttttaactgcttaaccaatgccctggtggcact 16498236  T
Q  456 ggttaacattctcctt 471  Q
    |||||||||| |||||    
T  16498237 ggttaacattgtcctt 16498252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 318 - 441
Target Start/End: Complemental strand, 36622225 - 36622101
Alignment:
Q  318 gagcactggttaaggaatccaaaa-gtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattt 416  Q
    ||||| ||||||||||||  |||| |||||||||||||||| |||| ||||||| |||||||| | |||||||||||||||  ||||||||||||||| |    
T  36622225 gagcattggttaaggaataaaaaaagtagaaaaattgtcttagaaatataaactattacttttgactaactaattattacacaactttttaataaaatct 36622126  T
Q  417 tacctattttagctgcttaaccaat 441  Q
    ||||| |||||| | ||||||||||    
T  36622125 tacctcttttagttacttaaccaat 36622101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 296 - 472
Target Start/End: Original strand, 1870462 - 1870639
Alignment:
Q  296 gggtcttgttaaccagtgccccgag--cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattat 393  Q
    |||||||| ||||||||||||  ||  || ||||||||||| | | || ||||||| |||||||| ||| |||| || | |||||| ||||| |||| ||    
T  1870462 gggtcttgctaaccagtgccctcagggcaatggttaaggaaactataaatagaaaatttgtcttgaaaatataagctttgacttttgattaagtaataat 1870561  T
Q  394 tacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctccttt 472  Q
    |||| || ||||| ||||||  |||| | |||| | |||||||||||||| ||| |||||||| ||| |||||||||||    
T  1870562 taca-catttttttataaaaagttacttgtttttgttgcttaaccaatgccccgagggcactgtttagcattctccttt 1870639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 318 - 419
Target Start/End: Complemental strand, 143986 - 143884
Alignment:
Q  318 gagcactggttaaggaatccaaaagtagaaaaa-ttgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattt 416  Q
    ||||||||||||| ||||| ||||||||||||| |||||||  ||| ||||| |||||||||| || || ||||||||| | || ||||||||||||| |    
T  143986 gagcactggttaaagaatctaaaagtagaaaaatttgtcttccaaatataaattgttacttttaatcaagtaattattataccaatttttaataaaatct 143887  T
Q  417 tac 419  Q
    |||    
T  143886 tac 143884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 335 - 405
Target Start/End: Original strand, 40664661 - 40664731
Alignment:
Q  335 tccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttt 405  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||  | ||||||||| |||| |||||||    
T  40664661 tccaaaagtaaaaaaattgtcttggaaatataaactgttacttttggtcaactaattactacaccactttt 40664731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 473
Target Start/End: Original strand, 40574137 - 40574290
Alignment:
Q  320 gcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttac 419  Q
    ||||||||||||||||| | || ||||||  |||||||||||| ||||| ||| |||||| ||  | |||| ||||||  ||||||| || ||| | |||    
T  40574137 gcactggttaaggaatctacaaatagaaattttgtcttggaaatataaaatgtaacttttgatagagtaataattacacaactttttcatgaaaatgtac 40574236  T
Q  420 ctattttagctgcttaaccaatgctccgggggcactggttaacattctcctttt 473  Q
     | |||| | |||||||||| ||| |  ||||||||||||| ||||||||||||    
T  40574237 ttgttttggatgcttaaccattgcccttggggcactggttagcattctcctttt 40574290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 430 - 471
Target Start/End: Original strand, 11610513 - 11610554
Alignment:
Q  430 tgcttaaccaatgctccgggggcactggttaacattctcctt 471  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  11610513 tgcttaaccaatgccccgggggcactggttaacattctcctt 11610554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 293 - 471
Target Start/End: Original strand, 3689584 - 3689762
Alignment:
Q  293 taagggtcttgttaaccagtgccc-cgag-cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaat 390  Q
    ||||||||||||||| |||||||| || | || |||||||||| || | || ||||||  || |||| |||| ||||  |||||||||| ||    ||||    
T  3689584 taagggtcttgttaatcagtgccctcgggacaatggttaaggattctacaaatagaaattttatctttgaaatataagatgttacttttgatcg--taat 3689681  T
Q  391 tattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcctt 471  Q
     ||||||| ||||| | |||||||| | | | |||| |||||||||||||||| |  ||||||||||||| ||||||||||    
T  3689682 gattacataactttatcataaaattgtgcttgttttggctgcttaaccaatgcccttggggcactggttagcattctcctt 3689762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 439
Target Start/End: Complemental strand, 27896580 - 27896463
Alignment:
Q  322 actggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacct 421  Q
    |||| |||||| |||||| | ||||||| |||| || |||| |||| ||||||||||| ||| | |||| ||||||  |||||||||| |||  |||| |    
T  27896580 actgattaaggtatccaagaatagaaaatttgttttagaaatataagctgttacttttgatttagtaataattacacaactttttaattaaaacttactt 27896481  T
Q  422 attttagctgcttaacca 439  Q
    ||||| | || |||||||    
T  27896480 attttggttgtttaacca 27896463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 7e-35; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 294 - 470
Target Start/End: Complemental strand, 8435204 - 8435026
Alignment:
Q  294 aagggtcttgttaaccagtgcccc--gagcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaatt 391  Q
    |||||||||||||||| |||||||  | |||||| ||||| |||| |||||| |||||||||||||||||| ||||| ||| |||||| |  |||||||     
T  8435204 aagggtcttgttaacccgtgcccccggtgcactgattaagaaatctaaaagtggaaaaattgtcttggaaatataaagtgtaacttttgaccaactaata 8435105  T
Q  392 attacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcct 470  Q
    |||| | || ||||||||||||| |||| |||||| | ||||||||||||||  | |||||||||||||||||||||||    
T  8435104 attataccattttttaataaaatcttacttattttggatgcttaaccaatgcctcaggggcactggttaacattctcct 8435026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 293 - 470
Target Start/End: Complemental strand, 19129871 - 19129691
Alignment:
Q  293 taagggtcttgttaaccagtgcccc--gagcactggttaaggaatccaaaa-gtagaaaaattgtcttggaaacataaactgttactttttattaactaa 389  Q
    ||||||||| |||||||| || |||  |||||||||||||||||||||||| ||| ||||||||| ||||||| |||||| | ||||||| | |||||||    
T  19129871 taagggtctggttaaccattgtccccagagcactggttaaggaatccaaaaagtaaaaaaattgtattggaaatataaacagctacttttgactaactaa 19129772  T
Q  390 ttattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcct 470  Q
    ||||||   || ||||||||||||| |||||| ||||| ||||||||| ||||| |||  ||||| |||||||||| ||||    
T  19129771 ttattaatccattttttaataaaatcttacctcttttatctgcttaacgaatgccccgacggcacgggttaacattgtcct 19129691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 296 - 472
Target Start/End: Complemental strand, 35557027 - 35556850
Alignment:
Q  296 gggtcttgttaaccagtgccccgag-cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattatt 394  Q
    |||||||||||||||||||| |||| || | ||||  |||| |||||||||||||||||||||| ||| ||||||||  | |||| | ||||||||||||    
T  35557027 gggtcttgttaaccagtgcctcgagacatttgttacagaattcaaaagtagaaaaattgtcttgaaaatataaactgccatttttgactaactaattatt 35556928  T
Q  395 acatcactttttaataaaattttacctattttagctgcttaaccaatgctcc-gggggcactggttaacattctccttt 472  Q
    ||| ||| |||||||||| | |||||| |||||| |||||||||||||| || || |||| | ||||||||||||||||    
T  35556927 acaccac-ttttaataaattcttacctcttttagttgcttaaccaatgccccaggaggcattagttaacattctccttt 35556850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 320 - 471
Target Start/End: Original strand, 2611142 - 2611293
Alignment:
Q  320 gcactggttaaggaatccaaaagtagaaaaat-tgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaatttta 418  Q
    ||||||||||||||||| | || ||||||  | ||||||||||| |||| |||| |||||||||||| |||| ||||||| ||||||||||||||  |||    
T  2611142 gcactggttaaggaatctataaatagaaatttatgtcttggaaatataagctgtcactttttattaagtaataattacattactttttaataaaaactta 2611241  T
Q  419 cctattttagctgcttaaccaatgctccgggggcactggttaacattctcctt 471  Q
    | |  ||| | |||||||||||||| || ||||| ||||||||||||||||||    
T  2611242 cttcattt-ggtgcttaaccaatgccccaggggccctggttaacattctcctt 2611293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 299 - 470
Target Start/End: Original strand, 7609513 - 7609683
Alignment:
Q  299 tcttgttaaccagtgccccgagcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacat 398  Q
    |||||||||| ||||||| | |||||| |||||||||| | || |||||    ||| ||||||| ||||||| | | ||||||| || |||| |||||||    
T  7609513 tcttgttaacgagtgcccggggcactgattaaggaatctataattagaatttctgttttggaaatataaactatcattttttatcaagtaataattacat 7609612  T
Q  399 cactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcct 470  Q
     ||||||||||||||  |||| | |||| | |||||||||||||| ||||| ||||||||||||||||||||    
T  7609613 tactttttaataaaaacttacttcttttgg-tgcttaaccaatgccccgggagcactggttaacattctcct 7609683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 293 - 471
Target Start/End: Complemental strand, 14863484 - 14863305
Alignment:
Q  293 taagggtcttgttaaccagtgcc--ccgagcactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaat 390  Q
    |||||||||||||||||||||||  | |  |||||||||| ||||| | || || ||    ||||||| ||| ||||||||| ||||||||| || ||||    
T  14863484 taagggtcttgttaaccagtgccttcgggacactggttaaagaatctataaatataatttatgtcttgaaaatataaactgtcactttttatcaagtaat 14863385  T
Q  391 tattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcctt 471  Q
     ||||||| | ||||||||||||  |||| | |||| | ||||||||||||| ||||||||||||| ||||||||||||||    
T  14863384 aattacattaatttttaataaaaacttactttttttgg-tgcttaaccaatgttccgggggcactgattaacattctcctt 14863305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 391
Target Start/End: Complemental strand, 26139807 - 26139710
Alignment:
Q  296 gggtcttgttaaccagtgccc-cgagc-actggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaatt 391  Q
    ||||||||||||||||||||| || |  ||||||||||||||||||||||||||||| ||||||||||| |||| | ||||||||| | |||||||||    
T  26139807 gggtcttgttaaccagtgccctcgggatactggttaaggaatccaaaagtagaaaaactgtcttggaaatataaccggttacttttgactaactaatt 26139710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 410
Target Start/End: Complemental strand, 10569063 - 10568975
Alignment:
Q  321 cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaata 410  Q
    |||||||||||||||||||||||| ||||||||||||  ||| ||||||| |||||||| |   ||| ||||||||| ||||||||||||    
T  10569063 cactggttaaggaatccaaaagtaaaaaaattgtcttaaaaatataaacttttacttttgaccgact-attattacaccactttttaata 10568975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 473
Target Start/End: Original strand, 21052656 - 21052774
Alignment:
Q  354 tcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggca 453  Q
    ||||| ||| ||||||||| ||||||||| || |||| ||||||| | ||||||||||||  |||| | |||| | ||||||||||||| ||| ||  ||    
T  21052656 tcttgcaaatataaactgtcactttttatcaagtaataattacatgattttttaataaaaacttacttctttt-ggtgcttaaccaatgttccaggtaca 21052754  T
Q  454 ctggttaacattctcctttt 473  Q
    ||| ||||||||||||||||    
T  21052755 ctgattaacattctcctttt 21052774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 470
Target Start/End: Complemental strand, 7319321 - 7319227
Alignment:
Q  376 tttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctcct 470  Q
    ||||||| || |||||||||||  ||||||||||| ||| ||||   |||| | |||||||||||||| |  ||||||||| |||||||||||||    
T  7319321 tttttatcaagtaattattacacaactttttaatagaatcttactctttttggatgcttaaccaatgcccatggggcactgtttaacattctcct 7319227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 387 - 472
Target Start/End: Complemental strand, 28812342 - 28812257
Alignment:
Q  387 taattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggcactggttaacattctccttt 472  Q
    ||||||||||| |||||||||||||| | |||||| ||||  ||| |||| |||||| ||||  |||| | |||||||||||||||    
T  28812342 taattattacaccactttttaataaactcttacctcttttgactggttaatcaatgccccggaagcacagattaacattctccttt 28812257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 11320210 - 11320151
Alignment:
Q  354 tcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaa 413  Q
    |||| |||| ||||||||| ||||||||| || |||| ||||||| ||||||||||||||    
T  11320210 tcttagaaatataaactgtcactttttatcaagtaataattacattactttttaataaaa 11320151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 469
Target Start/End: Complemental strand, 16802123 - 16801998
Alignment:
Q  343 tagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatg 442  Q
    ||||||| |||||||| ||| ||||| | | |||||| ||||| |||| ||||||| |||||||| |||||  |||  | |||| | ||||||||||||     
T  16802123 tagaaaatttgtcttgaaaatataaattttgacttttgattaagtaataattacattacttttta-taaaaagttatttgttttggttgcttaaccaata 16802025  T
Q  443 ctccgggggcactggttaacattctcc 469  Q
    | | | |||||||| ||||||||||||    
T  16802024 ccctgagggcactgtttaacattctcc 16801998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 442
Target Start/End: Complemental strand, 24340 - 24231
Alignment:
Q  334 atccaaaagtagaaaaa-ttgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgc 432  Q
    ||||||||||||||||| |||| ||||||| |||| || ||| |||| |  |||||||||| ||| ||  |||||||||||| |||| | ||||||||||    
T  24340 atccaaaagtagaaaaaattgtgttggaaatataaccttttatttttgaccaactaattatcacaccagcttttaataaaatcttacttcttttagctgc 24241  T
Q  433 ttaaccaatg 442  Q
    ||||||||||    
T  24240 ttaaccaatg 24231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 1133 - 1192
Alignment:
Q  354 tcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaa 413  Q
    ||||| ||| ||||||||| |||||||||||| |||| ||||||| ||||||||||||||    
T  1133 tcttgaaaatataaactgtcactttttattaagtaataattacattactttttaataaaa 1192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 351 - 470
Target Start/End: Original strand, 22449 - 22567
Alignment:
Q  351 ttgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggg 450  Q
    |||| ||||||| |||||| || ||||||||| || |||| ||||||| ||| ||||||||||  |||| | |||| | ||||||||||||||  |||||    
T  22449 ttgtgttggaaatataaaccgtcactttttatcaaataataattacattactctttaataaaaacttacttcttttgg-tgcttaaccaatgcctcgggg 22547  T
Q  451 gcactggttaacattctcct 470  Q
    | |||  |||||||||||||    
T  22548 gtactttttaacattctcct 22567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 354 - 473
Target Start/End: Complemental strand, 38886 - 38769
Alignment:
Q  354 tcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaattttacctattttagctgcttaaccaatgctccgggggca 453  Q
    ||||||||| ||||||||| | ||||||| || |||| ||||||| ||||||||||||||  |||  | | || | | |||||||||||||||  | |||    
T  38886 tcttggaaatataaactgtcattttttatcaagtaataattacattactttttaataaaaactta-ttttatttgattcttaaccaatgctcc-agagca 38789  T
Q  454 ctggttaacattctcctttt 473  Q
    ||||||||||||||||||||    
T  38788 ctggttaacattctcctttt 38769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 387
Target Start/End: Original strand, 1238 - 1332
Alignment:
Q  294 aagggtcttgttaaccagtgccccgag-cactggttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaact 387  Q
    |||||||||||||||| |||||||| | ||| |||||||||||| | || |||||    ||||||||||| ||||||||| ||||||||| ||||    
T  1238 aagggtcttgttaaccggtgccccggggcacgggttaaggaatctataaatagaatttctgtcttggaaatataaactgtcactttttatcaact 1332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 414
Target Start/End: Original strand, 60429 - 60516
Alignment:
Q  327 ttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaat 414  Q
    |||| |||| |||||||| ||  |||||||| |||| ||||||||||| ||||||| || ||||||||| |  | |||||||||||||    
T  60429 ttaatgaattcaaaagtaaaatgattgtctttgaaatataaactgttattttttatcaattaattattatactattttttaataaaat 60516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 414
Target Start/End: Original strand, 67761 - 67848
Alignment:
Q  327 ttaaggaatccaaaagtagaaaaattgtcttggaaacataaactgttactttttattaactaattattacatcactttttaataaaat 414  Q
    |||| |||| |||||||| ||  |||||||| |||| ||||||||||| ||||||| || ||||||||| |  | |||||||||||||    
T  67761 ttaatgaattcaaaagtaaaatgattgtctttgaaatataaactgttattttttatcaattaattattatactattttttaataaaat 67848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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