View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_high_196 (Length: 201)

Name: NF1199_high_196
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_high_196
NF1199_high_196
[»] chr6 (14 HSPs)
chr6 (18-192)||(2105061-2105234)
chr6 (39-160)||(5253222-5253346)
chr6 (39-160)||(8611973-8612097)
chr6 (42-149)||(29444775-29444885)
chr6 (39-160)||(12635801-12635925)
chr6 (39-160)||(21898635-21898759)
chr6 (103-160)||(9633624-9633681)
chr6 (103-160)||(14107357-14107414)
chr6 (39-86)||(33859395-33859442)
chr6 (110-160)||(3030642-3030692)
chr6 (110-160)||(30788852-30788902)
chr6 (39-80)||(29333220-29333261)
chr6 (39-99)||(9179799-9179859)
chr6 (39-126)||(19230592-19230680)
[»] chr7 (20 HSPs)
chr7 (39-160)||(5069814-5069938)
chr7 (39-160)||(17748381-17748505)
chr7 (39-160)||(38578866-38578990)
chr7 (39-160)||(22993366-22993490)
chr7 (39-96)||(18785655-18785712)
chr7 (39-96)||(43925498-43925555)
chr7 (39-160)||(13095844-13095968)
chr7 (39-96)||(1605927-1605984)
chr7 (39-96)||(1797446-1797503)
chr7 (39-96)||(26423353-26423410)
chr7 (103-160)||(43346778-43346835)
chr7 (39-150)||(23658165-23658279)
chr7 (39-91)||(45447956-45448008)
chr7 (39-160)||(22973953-22974077)
chr7 (43-160)||(27028269-27028389)
chr7 (39-96)||(10047942-10047999)
chr7 (43-96)||(10317811-10317864)
chr7 (39-96)||(47341862-47341919)
chr7 (39-87)||(34127695-34127743)
chr7 (56-96)||(39474943-39474983)
[»] chr3 (27 HSPs)
chr3 (47-160)||(28572211-28572327)
chr3 (39-160)||(15320169-15320293)
chr3 (39-160)||(29127902-29128026)
chr3 (39-160)||(35315939-35316063)
chr3 (39-160)||(7328827-7328950)
chr3 (39-157)||(26207804-26207925)
chr3 (39-149)||(30767258-30767371)
chr3 (55-160)||(7650226-7650334)
chr3 (39-160)||(47749105-47749228)
chr3 (39-160)||(54261209-54261333)
chr3 (103-160)||(7310703-7310760)
chr3 (39-96)||(31072861-31072918)
chr3 (39-96)||(45877437-45877494)
chr3 (39-160)||(13893909-13894033)
chr3 (39-159)||(3507534-3507657)
chr3 (39-96)||(15795561-15795617)
chr3 (104-160)||(36043674-36043730)
chr3 (39-91)||(48342003-48342055)
chr3 (61-151)||(50405612-50405705)
chr3 (51-97)||(10855379-10855425)
chr3 (103-149)||(19873422-19873468)
chr3 (39-160)||(47219127-47219251)
chr3 (39-160)||(47471815-47471938)
chr3 (55-96)||(30045820-30045861)
chr3 (39-96)||(49198334-49198391)
chr3 (39-91)||(7612998-7613050)
chr3 (39-91)||(42412846-42412898)
[»] chr2 (30 HSPs)
chr2 (39-160)||(10823043-10823167)
chr2 (40-151)||(7787040-7787154)
chr2 (46-160)||(12455300-12455417)
chr2 (39-160)||(8410114-8410238)
chr2 (39-160)||(9360747-9360871)
chr2 (39-160)||(25540403-25540527)
chr2 (39-150)||(331484-331598)
chr2 (39-160)||(7747257-7747381)
chr2 (39-90)||(15079466-15079517)
chr2 (39-160)||(18902529-18902653)
chr2 (39-160)||(41031905-41032028)
chr2 (39-160)||(41220618-41220742)
chr2 (55-159)||(16636065-16636172)
chr2 (39-96)||(29653610-29653667)
chr2 (39-96)||(34356189-34356246)
chr2 (39-90)||(21286427-21286478)
chr2 (39-160)||(2528340-2528464)
chr2 (39-160)||(3643886-3644010)
chr2 (39-160)||(11069861-11069985)
chr2 (39-160)||(38005385-38005509)
chr2 (103-160)||(18649025-18649082)
chr2 (39-96)||(19976873-19976930)
chr2 (103-160)||(28616378-28616435)
chr2 (39-96)||(38962746-38962803)
chr2 (39-96)||(39806951-39807008)
chr2 (55-96)||(40968981-40969022)
chr2 (103-160)||(44945643-44945700)
chr2 (116-160)||(792217-792261)
chr2 (39-91)||(29422198-29422250)
chr2 (103-159)||(29482280-29482336)
[»] chr5 (22 HSPs)
chr5 (39-160)||(8513503-8513627)
chr5 (39-160)||(9812856-9812980)
chr5 (39-160)||(12704998-12705122)
chr5 (39-160)||(5731919-5732043)
chr5 (39-97)||(20692917-20692975)
chr5 (39-160)||(42086311-42086435)
chr5 (39-160)||(7866565-7866689)
chr5 (39-160)||(20682616-20682740)
chr5 (39-96)||(1898985-1899042)
chr5 (103-160)||(2485247-2485304)
chr5 (39-96)||(11845867-11845924)
chr5 (39-96)||(15034059-15034116)
chr5 (39-96)||(25417249-25417306)
chr5 (103-160)||(27648424-27648481)
chr5 (39-91)||(35403583-35403635)
chr5 (39-90)||(35813070-35813121)
chr5 (110-160)||(38296729-38296779)
chr5 (39-80)||(6767133-6767174)
chr5 (39-96)||(28857112-28857169)
chr5 (39-84)||(30349563-30349608)
chr5 (103-160)||(40773324-40773381)
chr5 (39-99)||(23247414-23247474)
[»] chr8 (21 HSPs)
chr8 (39-160)||(10927593-10927717)
chr8 (39-160)||(17981428-17981552)
chr8 (39-160)||(8141089-8141213)
chr8 (39-160)||(44893277-44893401)
chr8 (39-159)||(15884556-15884678)
chr8 (39-97)||(1013042-1013100)
chr8 (39-160)||(14666070-14666194)
chr8 (39-160)||(33401799-33401922)
chr8 (39-96)||(2467184-2467241)
chr8 (103-160)||(8803108-8803165)
chr8 (39-96)||(38922480-38922537)
chr8 (39-96)||(44031506-44031563)
chr8 (51-160)||(26570923-26571035)
chr8 (39-130)||(583801-583893)
chr8 (115-160)||(1653859-1653904)
chr8 (115-160)||(1742235-1742280)
chr8 (39-96)||(6100459-6100516)
chr8 (39-96)||(22276546-22276603)
chr8 (103-160)||(43027359-43027416)
chr8 (39-91)||(34710638-34710690)
chr8 (39-99)||(34846801-34846860)
[»] chr4 (27 HSPs)
chr4 (39-160)||(7246645-7246769)
chr4 (39-160)||(38166015-38166139)
chr4 (39-157)||(1940779-1940897)
chr4 (39-160)||(55921022-55921146)
chr4 (39-96)||(36145281-36145338)
chr4 (39-160)||(36262766-36262888)
chr4 (39-160)||(47078446-47078570)
chr4 (39-151)||(8889010-8889125)
chr4 (39-160)||(2559295-2559419)
chr4 (39-160)||(30317221-30317345)
chr4 (39-160)||(42722576-42722700)
chr4 (42-91)||(29588727-29588776)
chr4 (43-96)||(43468339-43468392)
chr4 (39-130)||(41339424-41339518)
chr4 (39-160)||(3159468-3159592)
chr4 (39-160)||(29895775-29895899)
chr4 (39-160)||(38168245-38168368)
chr4 (39-96)||(1446814-1446871)
chr4 (55-96)||(10541020-10541061)
chr4 (103-160)||(31588741-31588798)
chr4 (103-160)||(37369041-37369098)
chr4 (39-96)||(41162948-41163005)
chr4 (103-160)||(47682381-47682438)
chr4 (103-160)||(50485998-50486055)
chr4 (39-96)||(52950070-52950127)
chr4 (39-96)||(53599048-53599105)
chr4 (112-160)||(48834699-48834747)
[»] scaffold0006 (1 HSPs)
scaffold0006 (39-157)||(68503-68621)
[»] scaffold0002 (3 HSPs)
scaffold0002 (39-160)||(556-680)
scaffold0002 (39-96)||(319408-319465)
scaffold0002 (39-96)||(412092-412149)
[»] chr1 (17 HSPs)
chr1 (39-160)||(18915851-18915975)
chr1 (41-160)||(2980931-2981053)
chr1 (39-150)||(40288487-40288601)
chr1 (42-160)||(43959821-43959942)
chr1 (39-160)||(30927727-30927851)
chr1 (55-160)||(15465965-15466073)
chr1 (39-86)||(9853354-9853401)
chr1 (39-160)||(41663856-41663980)
chr1 (42-96)||(45536695-45536749)
chr1 (39-96)||(49078098-49078155)
chr1 (80-160)||(50371834-50371917)
chr1 (101-160)||(3850742-3850801)
chr1 (50-160)||(34697330-34697443)
chr1 (39-160)||(33004015-33004139)
chr1 (39-96)||(31152700-31152757)
chr1 (39-96)||(34334362-34334419)
chr1 (42-90)||(48798143-48798191)
[»] scaffold0376 (1 HSPs)
scaffold0376 (39-160)||(12656-12780)
[»] scaffold0029 (1 HSPs)
scaffold0029 (41-160)||(41032-41154)
[»] scaffold0011 (1 HSPs)
scaffold0011 (103-160)||(224370-224427)
[»] scaffold0005 (1 HSPs)
scaffold0005 (39-96)||(271140-271197)
[»] scaffold0086 (1 HSPs)
scaffold0086 (39-126)||(26169-26259)
[»] scaffold0009 (2 HSPs)
scaffold0009 (45-160)||(42831-42949)
scaffold0009 (39-97)||(9422-9480)
[»] scaffold0332 (1 HSPs)
scaffold0332 (39-81)||(15317-15359)
[»] scaffold0209 (1 HSPs)
scaffold0209 (39-130)||(12561-12653)
[»] scaffold0079 (1 HSPs)
scaffold0079 (39-96)||(8161-8217)
[»] scaffold0010 (1 HSPs)
scaffold0010 (103-160)||(155710-155767)


Alignment Details
Target: chr6 (Bit Score: 114; Significance: 5e-58; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 2105234 - 2105061
Alignment:
Q  18 agttatttgggcttggcaaggaaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatggcttctacgtacgagtcg 117  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||    
T  2105234 agttgtttggacttggcaaggaaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggccagtatggcctctacgtacaagtcg 2105135  T
Q  118 gattagtcgcccattttttgtgggtcggaaaccgatgcgaaagnnnnnnnntgctaaaaacgtatcatcaagtat 192  Q
    |||||||||| || ||||| |||||||||||||||||||||||        ||||||||||||||||||||||||    
T  2105134 gattagtcgctcactttttatgggtcggaaaccgatgcgaaag-aaaaaaatgctaaaaacgtatcatcaagtat 2105061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 5253346 - 5253222
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| |||||||||||||||| | ||||| |||||| ||||| ||||  |   || |||||| | ||| ||||||| |||||||  |||    
T  5253346 aaggacgtacccggggaataccgggttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcatgagccggattaatcgcccaccttt 5253247  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||| ||||||||    
T  5253246 ggtgggtcggaaaccggtgcgaaag 5253222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 8612097 - 8611973
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| |||||||||||||||| | ||| | |||||||||||  |||| ||   ||||||||| | ||  |||||||||||||||  |||    
T  8612097 aaggacgtacccggggaataccgggttcgattccgaggaggaacaacgcttgaccagtgtgcatgcttctacgcatgaaccggattagtcgcccaccttt 8611998  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||| ||||||| ||||||||    
T  8611997 ggtgggtcagaaaccggtgcgaaag 8611973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 29444885 - 29444775
Alignment:
Q  42 gacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttgt 138  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||| ||||  |   || |||||| | ||| ||||||||| | |||| ||| ||    
T  29444885 gacgtacccgggggataccgggttcgatttctagggggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagttgtccatctttggt 29444786  T
Q  139 gggtcggaaac 149  Q
    |||||||||||    
T  29444785 gggtcggaaac 29444775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 12635801 - 12635925
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||| ||||| |||||| |||| |||| | ||||||||||||||||||  |||  |   || |||||| || || ||||||||||||||| | ||    
T  12635801 aaggacgtatccggggaataccaggtttgattcccaggggaaacaacgcttggctagtgcgcatgcctctacgcacaagccggattagtcgcccactatt 12635900  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||| ||||||||    
T  12635901 ggtgggtcggaaaccggtgcgaaag 12635925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 21898635 - 21898759
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||| ||||| |||||||||||||||| | ||| | |||||||||||| ||||  |   || |||||| | ||| |||||||||||  ||  |||    
T  21898635 aaggacgtatccggggaataccgggttcgattcccaggaggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgttcaccttt 21898734  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||| ||||||||    
T  21898735 agtgggtcggaaaccggtgcgaaag 21898759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 9633681 - 9633624
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||| ||||| |||||||||||||||  ||| ||||||||||||||| ||||||||    
T  9633681 tctacgcacgagccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 9633624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 14107414 - 14107357
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||| | ||| ||||||||||||||||| || ||||||||||||||| ||||||||    
T  14107414 tctacgcatgagccggattagtcgcccattattagtgggtcggaaaccggtgcgaaag 14107357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 33859442 - 33859395
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacg 86  Q
    |||||||||| | |||||||||||||||||||| |||||| |||||||    
T  33859442 aaggacgtactcaggaaataccgggttcgatttttagggggaacaacg 33859395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 3030692 - 3030642
Alignment:
Q  110 acgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||||||||||||||| ||  ||| |||||||||||||||||| |||||    
T  3030692 acgagtcggattagtcgctcacatttggtgggtcggaaaccgatgtgaaag 3030642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 30788902 - 30788852
Alignment:
Q  110 acgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    ||||| |||||||||||||||  ||| ||||||||||||||| ||||||||    
T  30788902 acgagccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 30788852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 29333261 - 29333220
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaa 80  Q
    |||||||||||| || |||||||||||||||||| |||||||    
T  29333261 aaggacgtacccagggaataccgggttcgatttccaggggaa 29333220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 9179859 - 9179799
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg 99  Q
    |||||||||||| || |||||||||||||||| | ||||| |||||| ||||  |||||||    
T  9179859 aaggacgtacccagggaataccgggttcgattcccagggggaacaacacttgaccagtatg 9179799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 19230680 - 19230592
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcg 126  Q
    |||||||||| |||||| |||||| ||||||||  | ||||| ||||||||||||||||||   || |||||| ||||| |||||||||||    
T  19230680 aaggacgtactcgggaa-taccggattcgattttcaagggaa-caacgcttggtcagtatgcatgcctctacgcacgagccggattagtcg 19230592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 8e-23; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 5069938 - 5069814
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    |||||||||||||||||||||||||||||||||| ||| | |||||||||| |  ||| ||   || |||||| || || |||||||||||||||  |||    
T  5069938 aaggacgtacccgggaaataccgggttcgatttccaggaggaacaacgcttagctagtgtgcatgcctctacgcacaagccggattagtcgcccaccttt 5069839  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||||||||||||    
T  5069838 ggtgggtcggaaaccgatgcgaaag 5069814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 17748505 - 17748381
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    |||||||||  |||| |||||||||||||||| | ||||| |||||||||||| ||||  |   || |||||||||||| ||||||||||| |||  |||    
T  17748505 aaggacgtattcggggaataccgggttcgattcccagggggaacaacgcttggccagtgcgcatgcctctacgtacgagccggattagtcgtccaccttt 17748406  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
      |||||||||||||||||||||||    
T  17748405 gttgggtcggaaaccgatgcgaaag 17748381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 38578990 - 38578866
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| |||| ||||||||||| | ||||| |||||||||||| ||||  |   || |||||| | ||| |||||||||||||||  |||    
T  38578990 aaggacgtacccggggaatatcgggttcgattcccagggggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgcccaccttt 38578891  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||| ||||||||    
T  38578890 ggtgggtcggaaaccggtgcgaaag 38578866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 22993490 - 22993366
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| |||| ||||||||||| | ||| | |||||||||||| |||| ||   || |||||| ||||  |||||||||||| ||  |||    
T  22993490 aaggacgtacccggggaatatcgggttcgattccgaggaggaacaacgcttggccagtgtgcatgcctctacgcacgaaccggattagtcgctcaccttt 22993391  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||| ||||||| ||||||||    
T  22993390 ggtgggtcagaaaccggtgcgaaag 22993366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 18785655 - 18785712
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||||||||| |||||||||||||||| ||||||| |||||| ||||| ||||    
T  18785655 aaggacgtacccggggaataccgggttcgattcctagggggaacaacacttggccagt 18785712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 43925498 - 43925555
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||||||||| |||||||||||||||| | ||||| |||||| ||||||||||    
T  43925498 aaggacgtacccggggaataccgggttcgattcccagggggaacaacacttggtcagt 43925555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 13095844 - 13095968
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| |||||||||||| ||| | ||||| |||||| ||||| ||||  |   || |||||| | ||| |||||||||||| ||  |||    
T  13095844 aaggacgtacccggggaataccgggttctattcccagggggaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgctcaccttt 13095943  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||| ||| ||||    
T  13095944 ggtgggtcggaaaccggtgcaaaag 13095968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 1605927 - 1605984
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||||||||  |||||| ||||||||||| ||||| |||||||||||| ||||    
T  1605927 aaggacgtacccggagaatacctggttcgatttccagggggaacaacgcttggccagt 1605984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 1797446 - 1797503
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||| ||| | |||||||||||||||| | |||||||||||||||||| ||||    
T  1797446 aaggacgtatccgaggaataccgggttcgattcccaggggaaacaacgcttggccagt 1797503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 26423410 - 26423353
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||||||  | |||||||||||||||| | |||||||||||||||||| ||||    
T  26423410 aaggacgtacccaaggaataccgggttcgattcccaggggaaacaacgcttggccagt 26423353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 43346835 - 43346778
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||||||||| |||||||||||| ||| ||| ||||||||||||||  ||||||||    
T  43346835 tctacgtacgagccggattagtcgctcatctttggtgggtcggaaaccagtgcgaaag 43346778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 150
Target Start/End: Original strand, 23658165 - 23658279
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    |||||||||||| || |||| |  |||||||||| ||||| |||||||||||| |||| ||   || |||||  ||||| ||||||||||| |||| |||    
T  23658165 aaggacgtacccagggaatatccagttcgatttccagggggaacaacgcttggccagtgtgcatgcctctacacacgagccggattagtcgtccatcttt 23658264  T
Q  136 tgtgggtcggaaacc 150  Q
     ||||||| ||||||    
T  23658265 ggtgggtcagaaacc 23658279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 45447956 - 45448008
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttgg 91  Q
    ||||||||||||| |||||||| ||||||||||| ||||  ||||||||||||    
T  45447956 aaggacgtacccgagaaataccaggttcgatttccagggagaacaacgcttgg 45448008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 22973953 - 22974077
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    |||||||||| |||| ||||||||||||||||   ||||| |||||||||||| |||| ||   || |||||| | ||| | ||||||||| |||  |||    
T  22973953 aaggacgtactcggggaataccgggttcgattctcagggggaacaacgcttggccagtgtgcatgcgtctacgcatgagccagattagtcgtccaccttt 22974052  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||| |||||||  |||||||    
T  22974053 ggtgggtcagaaaccggcgcgaaag 22974077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 160
Target Start/End: Original strand, 27028269 - 27028389
Alignment:
Q  43 acgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttgtg 139  Q
    ||||||| |||||||||| ||||||||||| ||||| |||||| ||||| ||||  |   || |||||  | |||  ||||||||||| ||  ||| |||    
T  27028269 acgtacctgggaaataccaggttcgatttccagggggaacaacacttggccagtgcgcatgcctctacacatgagctggattagtcgctcacctttggtg 27028368  T
Q  140 ggtcggaaaccgatgcgaaag 160  Q
    |||||||||||| ||||||||    
T  27028369 ggtcggaaaccggtgcgaaag 27028389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 10047999 - 10047942
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||| ||||| |||||||||||||||| | ||||| |||||| ||||| ||||    
T  10047999 aaggacgtatccggggaataccgggttcgattcccagggggaacaacacttggccagt 10047942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 10317864 - 10317811
Alignment:
Q  43 acgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||||| |||||||||||||||| | ||||| || ||| ||||||||||    
T  10317864 acgtacccggggaataccgggttcgattcccagggggaataacacttggtcagt 10317811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 47341862 - 47341919
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||||||||| ||||||| |||||||| | ||||| |||||| ||||| ||||    
T  47341862 aaggacgtacccggggaataccgagttcgattcccagggggaacaacacttggccagt 47341919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 34127743 - 34127695
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgc 87  Q
    ||||||||||||||| |||||||||||||||| | ||| | ||||||||    
T  34127743 aaggacgtacccggggaataccgggttcgattccgaggaggaacaacgc 34127695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 39474943 - 39474983
Alignment:
Q  56 ataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||||||||| ||| ||| |||||||||||||||||    
T  39474943 ataccgggttcgattcctatggggaacaacgcttggtcagt 39474983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 8e-23; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 28572327 - 28572211
Alignment:
Q  47 acccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttgtgggtc 143  Q
    ||||||| ||||| |||||||||| | |||||||||||||||||| |||||||   || |||||| ||||| |||||||||||||||  ||| |||||||    
T  28572327 acccggggaatactgggttcgattcccaggggaaacaacgcttggccagtatgcatgcctctacgcacgagccggattagtcgcccacctttggtgggtc 28572228  T
Q  144 ggaaaccgatgcgaaag 160  Q
    |||||||| ||||||||    
T  28572227 ggaaaccggtgcgaaag 28572211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 15320169 - 15320293
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| |||||||||||||||||| ||| | ||||| | |||| |||| ||   || |||||| ||||| |||||||||||||||  |||    
T  15320169 aaggacgtacccggggaataccgggttcgatttcgaggaggaacaatgattggccagtgtgcatgcctctacgcacgagccggattagtcgcccaccttt 15320268  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||| ||||||| ||||||||    
T  15320269 ggtgggtcagaaaccggtgcgaaag 15320293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 29127902 - 29128026
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||| | ||| |||| ||||||||||||| ||||  |||||| ||||||||||  |   || |||||| | ||| |||||||||||||||  |||    
T  29127902 aaggacgtatctggggaatatcgggttcgatttccagggagaacaacacttggtcagtgcgcatgcctctacgcatgagccggattagtcgcccaccttt 29128001  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||||||||||||    
T  29128002 ggtgggtcggaaaccgatgcgaaag 29128026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 35315939 - 35316063
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||  |||| ||||||||||| | ||||| |||||| ||||| ||||  |   || |||||| | |||  |||||||||||||| ||||    
T  35315939 aaggacgtacccggagaatatcgggttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcatgagctggattagtcgcccactttt 35316038  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||||||||||||    
T  35316039 ggtgggtcggaaaccgatgcgaaag 35316063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 7328827 - 7328950
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt----atggcttctacgtacgagtcggattagtcgcccatttt 134  Q
    |||||||||||||||||||||||||||||||| | ||||| |||||| ||||| ||||    ||| ||  |||| | ||| |||||||||||||||  ||    
T  7328827 aaggacgtacccgggaaataccgggttcgattcccagggggaacaacacttggccagtgcgcatgcct--tacgcatgagccggattagtcgcccacctt 7328924  T
Q  135 ttgtgggtcggaaaccgatgcgaaag 160  Q
    | |||||||| |||||| ||||||||    
T  7328925 tggtgggtcgaaaaccggtgcgaaag 7328950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 39 - 157
Target Start/End: Complemental strand, 26207925 - 26207804
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||| ||||||||| |||||||||||||||| | | ||| |||||||||||  |||| ||   || |||||| | ||| ||||||||||| ||||| ||    
T  26207925 aaggatgtacccggggaataccgggttcgattcccacggggaacaacgcttgtccagtgtgcatgcctctacgcatgagccggattagtcggccattatt 26207826  T
Q  136 tgtgggtcggaaaccgatgcga 157  Q
     ||||||||||||||| |||||    
T  26207825 agtgggtcggaaaccggtgcga 26207804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 39 - 149
Target Start/End: Complemental strand, 30767371 - 30767258
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||| ||||| ||| |||| ||||||||||||| ||||| |||||| ||||| |||| ||   || |||||| ||||| |||||||||||||||  |||    
T  30767371 aaggatgtacctggggaatatcgggttcgatttccagggggaacaacacttggccagtgtgcatgcctctacgcacgagccggattagtcgcccaccttt 30767272  T
Q  136 tgtgggtcggaaac 149  Q
     |||||||||||||    
T  30767271 ggtgggtcggaaac 30767258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 160
Target Start/End: Original strand, 7650226 - 7650334
Alignment:
Q  55 aataccgggttcgatttctaggggaaacaacgcttggtcagtatggct---tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccg 151  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||| |  |   |||||| ||||| |||||||||||||||  ||| |||||| ||||||||    
T  7650226 aataccgggttcgatttccagggggaacaacacttggccagtacgaatgtctctacgcacgagccggattagtcgcccacctttggtgggttggaaaccg 7650325  T
Q  152 atgcgaaag 160  Q
     ||||||||    
T  7650326 gtgcgaaag 7650334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 47749228 - 47749105
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||| || || |||||||||||||||| ||||||||| |||| ||||| ||||  |   || |||||| ||||| || ||||||||||||  |||    
T  47749228 aaggacgtatccagggaataccgggttcgattcctaggggaa-caactcttggccagtgcgcatgcctctacgcacgagccgaattagtcgcccaccttt 47749130  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     || |||||||||||||||||||||    
T  47749129 ggtaggtcggaaaccgatgcgaaag 47749105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 54261209 - 54261333
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||| ||| |||||||||||||||| ||||| | |||||||||||| ||||  |   || |||||| | ||| |||||||||||  ||  |||    
T  54261209 aaggacgtacctggggaataccgggttcgattcctaggaggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgttcaccttt 54261308  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||| ||||||||    
T  54261309 agtgggtcggaaaccggtgcgaaag 54261333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 7310760 - 7310703
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||| ||||| |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  7310760 tctacgcacgagccggattagtcgctcatctttggtgggtcggaaaccgatgcgaaag 7310703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 31072861 - 31072918
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||||||||  |||||| ||||||||||| ||||| |||||||||||||||||    
T  31072861 aaggacgtacccggagaataccaggttcgatttccagggggaacaacgcttggtcagt 31072918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 45877437 - 45877494
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||| ||||| |||||||||||||||||| |||||||||||| ||||| ||||    
T  45877437 aaggacgtatccggggaataccgggttcgatttccaggggaaacaacacttggccagt 45877494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 13893909 - 13894033
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||  ||||| ||||||||||| |||||| ||||| ||||||||||||||| |  |   || |||||  ||||| |||||||||||||||  |||    
T  13893909 aaggacgtgtccggggaataccgggttggatttccagggggaacaacgcttggtcaatgcgcatgcctctacacacgagccggattagtcgcccaccttt 13894008  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     |||| ||| |||||| ||||||||    
T  13894009 ggtggatcgaaaaccggtgcgaaag 13894033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 3507657 - 3507534
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    |||||||||| | || ||||||||||| |||| |||| || |||||| ||||| ||||  |   || |||||| ||||| |||||||||||| ||  |||    
T  3507657 aaggacgtacacagggaataccgggtttgattcctagagggaacaacacttggccagtgcgcatgcctctacgcacgagccggattagtcgctcaccttt 3507558  T
Q  136 tgtgggtcggaaaccgatgcgaaa 159  Q
     ||||||||||||||| |||||||    
T  3507557 ggtgggtcggaaaccggtgcgaaa 3507534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 15795617 - 15795561
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||||||||| ||||||| |||||||| | ||||| |||||||||||||||||    
T  15795617 aaggacgtacccggggaataccgagttcgattcccagggg-aacaacgcttggtcagt 15795561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 36043730 - 36043674
Alignment:
Q  104 ctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    ||||| ||||| |||||||||||||||  ||| ||||||||||||||| ||||||||    
T  36043730 ctacgcacgagccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 36043674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 48342003 - 48342055
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttgg 91  Q
    ||||||||||| ||| |||||||||||| ||| ||||||| ||||||||||||    
T  48342003 aaggacgtacctggggaataccgggttctattcctagggggaacaacgcttgg 48342055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 50405705 - 50405612
Alignment:
Q  61 gggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccg 151  Q
    |||||||||| | |||||||||||||||||  ||||  |   || |||||| |||||||||||||||||||||   || |||||||||||||||    
T  50405705 gggttcgattccgaggggaaacaacgcttgaccagtgcgcatgcctctacgcacgagtcggattagtcgcccaccattggtgggtcggaaaccg 50405612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 10855379 - 10855425
Alignment:
Q  51 gggaaataccgggttcgatttctaggggaaacaacgcttggtcagta 97  Q
    ||||||||||||||| |||||| ||||| |||||||||||| |||||    
T  10855379 gggaaataccgggtttgatttccagggggaacaacgcttggccagta 10855425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 19873422 - 19873468
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaac 149  Q
    |||||| ||||| ||||||||||| |||| |||||||||||||||||    
T  19873422 tctacgcacgagccggattagtcgtccatcttttgtgggtcggaaac 19873468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 47219127 - 47219251
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||| ||||| |||||| ||||||||| | | ||||||||||||||||  |||  |   || |||||| | ||| ||||||||||| |||  |||    
T  47219127 aaggacgtatccggggaataccaggttcgattcccaagggaaacaacgcttggctagtgcgcatgcctctacgcatgagccggattagtcgtccaccttt 47219226  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
      |||||||||||||| ||||||||    
T  47219227 gatgggtcggaaaccggtgcgaaag 47219251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 47471815 - 47471938
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    |||||||||||  || |||||||||||||||| | ||||||| ||| ||||||  |||  |   ||||||||| | ||| || |||||||| |||  |||    
T  47471815 aaggacgtacctagggaataccgggttcgattcccaggggaa-caatgcttggctagtgcgcatgcttctacgcatgagccgaattagtcgtccaccttt 47471913  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||||||||||||    
T  47471914 ggtgggtcggaaaccgatgcgaaag 47471938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 30045820 - 30045861
Alignment:
Q  55 aataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    |||||||||||||||| ||||||| |||||||||||| ||||    
T  30045820 aataccgggttcgattcctagggggaacaacgcttggccagt 30045861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 49198334 - 49198391
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    |||||| || ||||| |||||||||||||||| ||||||| |||||| ||||| ||||    
T  49198334 aaggacatatccggggaataccgggttcgattcctagggggaacaacacttggccagt 49198391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 7613050 - 7612998
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttgg 91  Q
    ||||||||||  ||| |||||||||||||||| | ||||| ||||||||||||    
T  7613050 aaggacgtacttggggaataccgggttcgattcccagggggaacaacgcttgg 7612998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 42412898 - 42412846
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttgg 91  Q
    ||||||||| ||||| |||||||||||||||| |  |||| ||||||||||||    
T  42412898 aaggacgtatccggggaataccgggttcgattcccggggggaacaacgcttgg 42412846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 10823043 - 10823167
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| ||||||||||| |||| | ||| | |||||||||||| ||||  |   || |||||| ||||| |||||||||||||||  |||    
T  10823043 aaggacgtacccggggaataccgggtttgattcccaggaggaacaacgcttggccagtgcgcatgcctctacgcacgagccggattagtcgcccaccttt 10823142  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
    |||||||||||||||| ||||||||    
T  10823143 tgtgggtcggaaaccggtgcgaaag 10823167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 7787040 - 7787154
Alignment:
Q  40 aggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccatttttt 136  Q
    |||||||||||||| |||||||||||||||||| ||||| |||||  ||||| ||||| |   || |||||| ||||| |||||||||||||||| |||     
T  7787040 aggacgtacccggggaataccgggttcgatttccagggggaacaatacttggccagtacgcatgcctctacgcacgagccggattagtcgcccatctttg 7787139  T
Q  137 gtgggtcggaaaccg 151  Q
    |||| ||| ||||||    
T  7787140 gtggatcgaaaaccg 7787154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 12455300 - 12455417
Alignment:
Q  46 tacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttgtgggt 142  Q
    |||||||| |||||||||||||||||| |||||||||||||||| | ||||  |   || |||||| ||||| |||||||||||| ||   || ||||||    
T  12455300 tacccggggaataccgggttcgatttccaggggaaacaacgcttagccagtgcgcatgcctctacgcacgagccggattagtcgctcaccattggtgggt 12455399  T
Q  143 cggaaaccgatgcgaaag 160  Q
    ||||||||| ||||||||    
T  12455400 cggaaaccggtgcgaaag 12455417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 8410114 - 8410238
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||  |||| ||||||||||| | ||||| |||||| ||||| ||||  |   || |||||| ||||| ||||||||||||||| ||||    
T  8410114 aaggacgtacccggagaatatcgggttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcacgagccggattagtcgcccactttt 8410213  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     | ||||||||||||| ||||||||    
T  8410214 ggggggtcggaaaccggtgcgaaag 8410238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 9360871 - 9360747
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| |||||| ||||||||| |||| |||||||||| |||| ||||  |   || |||||| ||||| || ||||||||||||  |||    
T  9360871 aaggacgtacccggggaataccaggttcgattactagaggaaacaacgtttggccagtgcgcatgcctctacgcacgagccgaattagtcgcccaccttt 9360772  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||| ||||||||| ||||||||    
T  9360771 agtgggccggaaaccggtgcgaaag 9360747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 25540527 - 25540403
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||| | ||| ||||| |||||||||| ||||||| |||||||||||| ||||  |   || |||||| ||||| ||||||||||| |||  |||    
T  25540527 aaggacgtatctggggaatactgggttcgattcctagggggaacaacgcttggccagtgcgcatgcctctacgcacgagccggattagtcgtccaccttt 25540428  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||| ||||||||    
T  25540427 ggtgggtcggaaaccggtgcgaaag 25540403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 150
Target Start/End: Original strand, 331484 - 331598
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| |||||||||||||||| | ||||| |||||| ||||| ||||  |   ||||||||| | ||| |||||||||||||||  |||    
T  331484 aaggacgtacccggggaataccgggttcgattcccagggggaacaacacttggccagtgcgcatgcttctacgcatgagccggattagtcgcccaccttt 331583  T
Q  136 tgtgggtcggaaacc 150  Q
     |||||| |||||||    
T  331584 ggtgggttggaaacc 331598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 7747257 - 7747381
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||| ||||| |||||||||||||||| ||||| | ||||||| |||| |||| ||   || |||||| | ||| |||||||||||  ||  |||    
T  7747257 aaggacgtatccggggaataccgggttcgattcctaggaggaacaacgtttggccagtgtgcatgcctctacgcatgagccggattagtcgttcaccttt 7747356  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||| ||||||||    
T  7747357 agtgggtcggaaaccggtgcgaaag 7747381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 15079466 - 15079517
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttg 90  Q
    ||||||||||||||| ||||| |||||||||||| ||||| |||||||||||    
T  15079466 aaggacgtacccggggaatacagggttcgatttccagggggaacaacgcttg 15079517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 18902653 - 18902529
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatggct---tctacgtacgagtcggattagtcgcccattttt 135  Q
    |||||||||| |||| |||||||||||||||| | | ||| |||||||||||  ||||  |  |   |||||| ||||| | |||||||||||||  |||    
T  18902653 aaggacgtactcggggaataccgggttcgattcccacggggaacaacgcttgaccagtgcgcgtgtctctacgcacgagccagattagtcgcccaccttt 18902554  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||| ||||||||    
T  18902553 ggtgggtcggaaaccggtgcgaaag 18902529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 41032028 - 41031905
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||| |||||  ||||||||||||| | ||||| |||||| ||||| |||| ||   || |||||| ||||| |||||||||| ||||  |||    
T  41032028 aaggacgtaccagggaac-accgggttcgattcccagggggaacaacacttggccagtgtgcatgcctctacgcacgagccggattagtcacccaccttt 41031930  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||  ||||||||    
T  41031929 ggtgggtcggaaaccagtgcgaaag 41031905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 41220618 - 41220742
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| |||||||||||||||| | ||| | |||||||||||| ||||  |   || |||||| | ||| || ||||||||  ||  |||    
T  41220618 aaggacgtacccggggaataccgggttcgattcccaggaggaacaacgcttggccagtgcgcatgcctctacgcatgagccgaattagtcgttcaccttt 41220717  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||| ||||||||    
T  41220718 agtgggtcggaaaccggtgcgaaag 41220742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 159
Target Start/End: Complemental strand, 16636172 - 16636065
Alignment:
Q  55 aataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccg 151  Q
    |||| |||||||||||| ||| ||||||||| |||| ||||| ||   ||||||||| |||||  |||||||||   ||||||| |||| | ||||||||    
T  16636172 aatatcgggttcgatttttagaggaaacaacacttgatcagtgtgcatgcttctacgcacgagatggattagtcattcatttttggtggattggaaaccg 16636073  T
Q  152 atgcgaaa 159  Q
    ||||||||    
T  16636072 atgcgaaa 16636065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 29653610 - 29653667
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    |||||||||| | ||||||||||| ||||||||| |||| ||||||||||||| ||||    
T  29653610 aaggacgtactccggaaataccggattcgatttccagggaaaacaacgcttgggcagt 29653667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 34356189 - 34356246
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||| | ||| |||||||||||||||||| ||||| |||||| ||||||||||    
T  34356189 aaggacgtatctggggaataccgggttcgatttccagggggaacaacacttggtcagt 34356246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 21286427 - 21286478
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttg 90  Q
    ||||||||| ||||| |||||||||||||||| | ||| |||||||||||||    
T  21286427 aaggacgtatccggggaataccgggttcgattcccaggcgaaacaacgcttg 21286478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 2528464 - 2528340
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    |||||||||| || | || ||||||||||||| | ||||| ||||||||||||||||| ||   || |||||  |  || |||||||||||| ||| |||    
T  2528464 aaggacgtactcgaggaacaccgggttcgattcccagggggaacaacgcttggtcagtgtgcatgcctctacacataagccggattagtcgctcatcttt 2528365  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||| ||||||||| | ||||||||    
T  2528364 agtgagtcggaaactggtgcgaaag 2528340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 3644010 - 3643886
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||| ||||| ||||||||||| |||||||| | | |||||||||||| ||||  |   || |||||| | |||  |||||||||| |||  |||    
T  3644010 aaggacgtatccggggaataccgggtttgatttctacgaggaacaacgcttggccagtgcgcatgcctctacgcatgagctggattagtcgtccaccttt 3643911  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||| ||||||||| ||||||||    
T  3643910 ggtgggccggaaaccgttgcgaaag 3643886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 11069861 - 11069985
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| |||||| ||||||||| | ||||| ||||||| |||| ||||  |    | |||||| |||||  | |||||||| |||   ||    
T  11069861 aaggacgtacccggggaataccaggttcgattccgagggggaacaacgtttggccagtgcgcatacctctacgcacgagctgaattagtcgtccaccgtt 11069960  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||||||||||||    
T  11069961 ggtgggtcggaaaccgatgcgaaag 11069985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 38005385 - 38005509
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| ||||| |||||||||| | | ||| |||||||||||| ||||  |   || |||||  | ||| |||||||||||||||  |||    
T  38005385 aaggacgtacccggggaatactgggttcgattcccaaggggaacaacgcttggccagtgcgcatgcctctacacatgagccggattagtcgcccaccttt 38005484  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     |||| |||||||| | ||||||||    
T  38005485 ggtggatcggaaactggtgcgaaag 38005509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 18649082 - 18649025
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||| | |||||||||||||||| || |||| |||||| |||||||| ||||||||    
T  18649082 tctacgcatgagtcggattagtcgctcacttttggtgggttggaaaccgttgcgaaag 18649025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 19976930 - 19976873
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||| ||||| |||||||||||||||||  ||||| || |||| |||||||||    
T  19976930 aaggacgtatccggggaataccgggttcgattttcagggggaataacgtttggtcagt 19976873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 28616435 - 28616378
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||| ||||| | |||||||||||||| ||| ||||||| ||||||| ||||||||    
T  28616435 tctacgcacgagccagattagtcgcccatctttagtgggtcagaaaccggtgcgaaag 28616378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 38962746 - 38962803
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||| ||||| |||||||||||||||||  ||| | |||||||||||| ||||    
T  38962746 aaggacgtatccggggaataccgggttcgattttcaggaggaacaacgcttggccagt 38962803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 39807008 - 39806951
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||||||||| |||||||||||||||| | | | ||||||||| |||| ||||    
T  39807008 aaggacgtacccggggaataccgggttcgattcccaagagaaacaacgtttggccagt 39806951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 40969022 - 40968981
Alignment:
Q  55 aataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    |||||||||||||||||| |||| |||||||| |||||||||    
T  40969022 aataccgggttcgatttccagggaaaacaacgtttggtcagt 40968981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 44945643 - 44945700
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||| ||||| |||||||||||||||  ||| |||| |||||||||| ||||||||    
T  44945643 tctacgcacgagccggattagtcgcccacctttagtggatcggaaaccggtgcgaaag 44945700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 792217 - 792261
Alignment:
Q  116 cggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||||||||||||| ||| ||||||||||||||| ||| ||||    
T  792217 cggattagtcgcccatctttggtgggtcggaaaccggtgcaaaag 792261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 29422198 - 29422250
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttgg 91  Q
    ||||||||||||||| ||||| |||||||||||| || || |||||| |||||    
T  29422198 aaggacgtacccggggaatactgggttcgatttccagagggaacaacacttgg 29422250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 29482336 - 29482280
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaa 159  Q
    ||||| |||||||||||||||| | ||||||||| ||||| | |||||| |||||||    
T  29482336 tctacatacgagtcggattagttgtccattttttatgggttgaaaaccggtgcgaaa 29482280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 8513503 - 8513627
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt----atggcttctacgtacgagtcggattagtcgcccatttt 134  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||| |||||| ||||    || || |||||| ||||| | ||||||||| |||  ||    
T  8513503 aaggacgtacccggggaataccgggttcgattcctaggggaaacaatgcttggccagtgcacat-gcctctacgcacgagccagattagtcgtccacctt 8513601  T
Q  135 ttgtgggtcggaaaccgatgcgaaag 160  Q
    | ||||||||||||||| ||||||||    
T  8513602 tggtgggtcggaaaccggtgcgaaag 8513627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 9812856 - 9812980
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| |||||||||||||||| | ||| | |||||||||||| |||| ||   ||||||||| | ||  |||||||||||||||  |||    
T  9812856 aaggacgtacccggggaataccgggttcgattccgaggaggaacaacgcttggccagtgtgcatgcttctacgcatgaaccggattagtcgcccaccttt 9812955  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||| ||||||| ||||||||    
T  9812956 ggtgggtcagaaaccggtgcgaaag 9812980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 12704998 - 12705122
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| |||||||||||||||| | ||| | |||||||||||  |||| ||   ||||||||| | ||  |||||||||||||||  |||    
T  12704998 aaggacgtacccggggaataccgggttcgattccgaggaggaacaacgcttgaccagtgtgcatgcttctacgcatgaaccggattagtcgcccaccttt 12705097  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||| ||||||| ||||||||    
T  12705098 ggtgggtcagaaaccggtgcgaaag 12705122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 5732043 - 5731919
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| |||||||||||||||| | ||| | |||||||||||| ||||  |   || |||||||| ||| | |||||||||  ||  |||    
T  5732043 aaggacgtacccggggaataccgggttcgattcccaggaggaacaacgcttggccagtgcgcatgcctctacgtatgagccagattagtcgttcaccttt 5731944  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||| ||||||||    
T  5731943 agtgggtcggaaaccggtgcgaaag 5731919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 20692917 - 20692975
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagta 97  Q
    ||||||||||||||| ||||||||||| |||| |||| ||||||||||||||| |||||    
T  20692917 aaggacgtacccggggaataccgggtttgattcctagaggaaacaacgcttggccagta 20692975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 42086311 - 42086435
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||| | |||||||||||||||| | ||||| |||||||||||  ||||  |   || |||||| | ||| ||||||||||| |||  |||    
T  42086311 aaggacgtacccgaggaataccgggttcgattcccagggggaacaacgcttgaccagtgcgcatgcctctacgcatgagccggattagtcgtccaccttt 42086410  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||| ||||||||    
T  42086411 ggtgggtcggaaaccggtgcgaaag 42086435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 7866565 - 7866689
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||| | |||||||||||||||| | ||| | |||||||||||| |||| ||   || |||||| ||||  |||||||||||||||  |||    
T  7866565 aaggacgtacccgaggaataccgggttcgattccgaggaggaacaacgcttggccagtgtgcatgcctctacgcacgaaccggattagtcgcccaccttt 7866664  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||  ||||||  ||||||||    
T  7866665 ggtgggttagaaaccagtgcgaaag 7866689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 20682740 - 20682616
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| ||||  ||||| |||||| ||||| |||||||||||| ||||  |   || |||||| ||||| ||||||| ||| |||  |||    
T  20682740 aaggacgtacccggggaatattgggttagatttccagggggaacaacgcttggccagtgcgcatgcctctacgcacgagccggattaatcgaccaccttt 20682641  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     |||||| |||||||| ||||||||    
T  20682640 agtgggttggaaaccggtgcgaaag 20682616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 1898985 - 1899042
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||| ||||||||| |||||||||||||||| | ||||| |||||||||||| ||||    
T  1898985 aaggatgtacccggggaataccgggttcgattcccagggggaacaacgcttggccagt 1899042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 2485247 - 2485304
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||||| |||||||||||||||| ||  |||  |||||||||||||||||||||||    
T  2485247 tctacgtatgagtcggattagtcgctcacctttgatgggtcggaaaccgatgcgaaag 2485304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 11845924 - 11845867
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||||||| |||||| ||||||||||||| ||||| ||||||| |||| ||||    
T  11845924 aaggacgtacccgagaaatatcgggttcgatttcgagggggaacaacgtttggccagt 11845867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 15034059 - 15034116
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||| ||||||||| |||||||||||| ||||| | |||||||||| ||||||||||    
T  15034059 aaggatgtacccggggaataccgggttcaatttccatgggaaacaacacttggtcagt 15034116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 25417306 - 25417249
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    |||||||||| |||| |||||||||||||||| | ||||| |||||||||||| ||||    
T  25417306 aaggacgtactcggggaataccgggttcgattcccagggggaacaacgcttggccagt 25417249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 27648481 - 27648424
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||||| ||| ||||||||||| |||| ||| |||| |||||||||||||||||||    
T  27648481 tctacgtatgagccggattagtcgtccatctttggtggatcggaaaccgatgcgaaag 27648424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 35403635 - 35403583
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttgg 91  Q
    |||||||||| |||||||||||||||||||||   ||||| ||||||||||||    
T  35403635 aaggacgtactcgggaaataccgggttcgattctaagggggaacaacgcttgg 35403583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 35813121 - 35813070
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttg 90  Q
    ||||||||||||| | |||||||||||||||| |||||||||| || |||||    
T  35813121 aaggacgtacccgaggaataccgggttcgattcctaggggaaataatgcttg 35813070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 38296779 - 38296729
Alignment:
Q  110 acgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||||||||||||||||||  |||  |||||||||||||||||| ||||    
T  38296779 acgagtcggattagtcgcccacctttgatgggtcggaaaccgatgcaaaag 38296729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 6767174 - 6767133
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaa 80  Q
    ||||||||||||||| ||||||||||||||||  ||||||||    
T  6767174 aaggacgtacccggggaataccgggttcgattcataggggaa 6767133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 28857112 - 28857169
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||| ||||||| |||||||||||||||| | ||||| |||||| ||||| ||||    
T  28857112 aaggacgcacccggggaataccgggttcgattcccagggggaacaacacttggccagt 28857169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 30349563 - 30349608
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaa 84  Q
    ||||||||| ||||| ||||||||||| |||||||||||| |||||    
T  30349563 aaggacgtatccggggaataccgggtttgatttctagggggaacaa 30349608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 40773324 - 40773381
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    ||||| ||||||||||||||||||  ||| ||| ||| ||||||||||| ||||||||    
T  40773324 tctacatacgagtcggattagtcgttcatctttggtgcgtcggaaaccggtgcgaaag 40773381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 23247474 - 23247414
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg 99  Q
    ||||||||||| ||| |||| ||||||||||| | ||| | ||||||||||| ||||||||    
T  23247474 aaggacgtacctggggaatatcgggttcgattcccaggaggaacaacgcttgatcagtatg 23247414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 10927593 - 10927717
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| |||||||||||||||| ||||| | |||||||||||| ||||  |   || |||||| | ||| |||||||||||  ||  |||    
T  10927593 aaggacgtacccggggaataccgggttcgattcctaggaggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgttcaccttt 10927692  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||||||||||||    
T  10927693 agtgggtcggaaaccgatgcgaaag 10927717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 17981428 - 17981552
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||| |||||||||||||||||||||||||| | ||||| |||||| ||||  |||| ||   || |||||| |||||||| |||||| |||||  |||    
T  17981428 aaggatgtacccgggaaataccgggttcgattcccagggggaacaactcttgaccagtgtgcatgcctctacgcacgagtcgaattagttgcccagcttt 17981527  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||| ||||||||||| ||||||||    
T  17981528 ggtgagtcggaaaccggtgcgaaag 17981552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 8141089 - 8141213
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    |||||||||  |||| |||||||||||||||||| |||||||||||||||||| ||||  |   || |||||| | |||  | |||||||| |||  |||    
T  8141089 aaggacgtattcggggaataccgggttcgatttccaggggaaacaacgcttggccagtgcgcatgcctctacgcatgagctgaattagtcgtccacattt 8141188  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||| ||||||||||||||||    
T  8141189 ggtgggtcagaaaccgatgcgaaag 8141213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 44893401 - 44893277
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| |||||||||||| ||||||||||| ||||| |||||| |||| ||   || |||||| ||||| ||||||| |||| ||   ||    
T  44893401 aaggacgtacccggggaataccgggttcaatttctagggggaacaatgcttggccagtgtgcatgcctctacgcacgagccggattaatcgctcaccctt 44893302  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
      |||||||||||||| ||| ||||    
T  44893301 gatgggtcggaaaccggtgcaaaag 44893277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 15884678 - 15884556
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||| ||| |||||||||||||||| | ||||||| |||| |||||  |||  |   || |||||| ||||| |||||||||||||||  |||    
T  15884678 aaggacgtacctggggaataccgggttcgattcccaggggaa-caacacttggcaagtgcgcatgcctctacgcacgagccggattagtcgcccaccttt 15884580  T
Q  136 tgtgggtcggaaaccgatgcgaaa 159  Q
     ||||||||||||||| |||||||    
T  15884579 ggtgggtcggaaaccggtgcgaaa 15884556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 1013100 - 1013042
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagta 97  Q
    ||||||||| ||||| |||||||||||||||| | ||||| |||||||||||| |||||    
T  1013100 aaggacgtatccggggaataccgggttcgattcccagggggaacaacgcttggccagta 1013042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 14666194 - 14666070
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||| ||||| |||||||||||||||| | |||||||||||| ||||| ||||  |   || |||||| || || | |||||||||||||   ||    
T  14666194 aaggacgtatccggggaataccgggttcgattcccaggggaaacaacacttggccagtgcgcatgcctctacgcacaagccagattagtcgcccacagtt 14666095  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     |||||||| |||||| ||||||||    
T  14666094 ggtgggtcgaaaaccggtgcgaaag 14666070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 33401922 - 33401799
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    |||||||||| |||| |||||||||||||||||  ||||| |||||| ||||  |||| ||   || |||||| | |||||||||||||||||||  |||    
T  33401922 aaggacgtactcggggaataccgggttcgattttcagggggaacaacacttgaccagtgtgcatgcctctacgcatgagtcggattagtcgcccaccttt 33401823  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     |||| ||  |||||||||||||||    
T  33401822 agtggatc-aaaaccgatgcgaaag 33401799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 2467241 - 2467184
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||| ||||| |||||||||||||||||| ||||| |||||| ||||| ||||    
T  2467241 aaggacgtatccggggaataccgggttcgatttccagggggaacaactcttggccagt 2467184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 8803108 - 8803165
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||| ||||| ||||||||||||||||   | ||||||||||||||||||||||||    
T  8803108 tctacgcacgagccggattagtcgcccatcaatggtgggtcggaaaccgatgcgaaag 8803165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 38922537 - 38922480
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||||||||| |||||||||||||||| | || || |||||||||||| ||||    
T  38922537 aaggacgtacccggggaataccgggttcgattcccagagggaacaacgcttggccagt 38922480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 44031563 - 44031506
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||| ||| |||||||||| ||||||||||||| ||||| |||||||||||| ||||    
T  44031563 aaggatgtaaccgggaaatatcgggttcgatttccagggggaacaacgcttggccagt 44031506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 26570923 - 26571035
Alignment:
Q  51 gggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttgtgggtcggaa 147  Q
    |||||||| ||||||| ||| ||||||| |||||||||||| |||| ||   || |||||| | ||| ||||||||||| |||  |||  || |||||||    
T  26570923 gggaaatatcgggttcaattcctagggggaacaacgcttggccagtgtgtatgcatctacgcatgagccggattagtcgtccacctttgatgagtcggaa 26571022  T
Q  148 accgatgcgaaag 160  Q
    ||||||| |||||    
T  26571023 accgatgtgaaag 26571035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 583801 - 583893
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgccca 130  Q
    |||||||||| || |||||||||||||||||| ||||||  |||||||||||  ||||  |   || |||||| | |||||||||||||||||||    
T  583801 aaggacgtactcgagaaataccgggttcgattcctaggg--aacaacgcttgaccagtgcgcatgcctctacgcatgagtcggattagtcgccca 583893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 1653904 - 1653859
Alignment:
Q  115 tcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||||||||| ||||| || ||||||||||||||| ||||||||    
T  1653904 tcggattagtcgtccattattggtgggtcggaaaccggtgcgaaag 1653859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 1742280 - 1742235
Alignment:
Q  115 tcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||||||||| ||||| || ||||||||||||||| ||||||||    
T  1742280 tcggattagtcgtccattattggtgggtcggaaaccggtgcgaaag 1742235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 6100459 - 6100516
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||| ||||| |||||||||||||||| | ||| | |||||||||||| ||||    
T  6100459 aaggacgtatccggggaataccgggttcgattcccaggaggaacaacgcttggccagt 6100516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 22276603 - 22276546
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    |||||||||||| | ||||||||||||| ||| ||||| | |||||| ||||||||||    
T  22276603 aaggacgtacccagaaaataccgggttctattcctaggaggaacaacacttggtcagt 22276546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 43027359 - 43027416
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||| | ||| ||||||||||| |||| |||  |||||||||||||||||||||||    
T  43027359 tctacgcatgagccggattagtcgtccatctttgatgggtcggaaaccgatgcgaaag 43027416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 34710690 - 34710638
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttgg 91  Q
    |||||||||| ||| ||||||||| ||||||| | |||||||||||| |||||    
T  34710690 aaggacgtactcggaaaataccggattcgattcccaggggaaacaacacttgg 34710638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 34846801 - 34846860
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg 99  Q
    ||||||||||||||||| |||||||||||||| | | ||  |||||||||||| |||||||    
T  34846801 aaggacgtacccgggaa-taccgggttcgattcccatggtgaacaacgcttggccagtatg 34846860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 7246769 - 7246645
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| ||||| |||||||||| |||| || |||||||||||| ||||  |   || |||||| | ||| |||||||||||||||  |||    
T  7246769 aaggacgtacccggggaatactgggttcgattcctagtgggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgcccaccttt 7246670  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||| ||||||||    
T  7246669 ggtgggtcggaaaccggtgcgaaag 7246645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 38166015 - 38166139
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt----atggcttctacgtacgagtcggattagtcgcccatttt 134  Q
    ||||||||| ||||| ||||| ||||| |||| | ||||| |||||||||||| ||||    |||||| ||||| ||||| |||||||||||||||  ||    
T  38166015 aaggacgtatccggggaatactgggttggattcccagggggaacaacgcttggccagtgcgcatggct-ctacgcacgagccggattagtcgcccacctt 38166113  T
Q  135 ttgtgggtcggaaaccgatgcgaaag 160  Q
    | ||||||||||||||| ||||||||    
T  38166114 tggtgggtcggaaaccggtgcgaaag 38166139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 157
Target Start/End: Complemental strand, 1940897 - 1940779
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgctt-ggtcagtatggcttctacgtacgagtcggattagtcgcccattttttg 137  Q
    |||||||||||||||||||| ||||||||||| | ||||| |||||||||| |||  | || || |||||| ||||| |||||||||||||||  ||| |    
T  1940897 aaggacgtacccgggaaatatcgggttcgattcccagggggaacaacgcttgggtgcgcat-gcctctacgcacgagccggattagtcgcccacctttgg 1940799  T
Q  138 tgggtcggaaaccgatgcga 157  Q
    ||||||| |||||| |||||    
T  1940798 tgggtcgaaaaccggtgcga 1940779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 55921022 - 55921146
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||| ||||||| |||||||||||||||| | ||||| |||||| ||||||||||  |   || |||||||| ||| ||||||| |||| ||  |||    
T  55921022 aaggacgcacccggggaataccgggttcgattcccagggggaacaacacttggtcagtgcgcatgcctctacgtatgagccggattaatcgctcaccttt 55921121  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||| ||||||||    
T  55921122 ggtgggtcggaaaccggtgcgaaag 55921146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 36145338 - 36145281
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||||||||| |||||||||||||||| | ||||||||||||||||| |||||    
T  36145338 aaggacgtacccggggaataccgggttcgattcccaggggaaacaacgcttgatcagt 36145281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 36262888 - 36262766
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt----atggcttctacgtacgagtcggattagtcgcccatttt 134  Q
    ||||||||||||||  |||||||||||||||| | ||||  |||||||||||| ||||    ||| || ||||| |||||||||||||||||||||  ||    
T  36262888 aaggacgtacccggagaataccgggttcgattcccaggg--aacaacgcttggccagtgcacatgcct-ctacgcacgagtcggattagtcgcccacctt 36262792  T
Q  135 ttgtgggtcggaaaccgatgcgaaag 160  Q
    | ||||||| |||||| |||||||||    
T  36262791 tggtgggtcagaaaccaatgcgaaag 36262766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 47078446 - 47078570
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt----atggcttctacgtacgagtcggattagtcgcccatttt 134  Q
    ||||||||||||||| |||||||||||||||| | ||||| |||||||||||| ||||    || || |||||| ||||| |||||||||||| ||   |    
T  47078446 aaggacgtacccggggaataccgggttcgattcccagggggaacaacgcttggccagtgcacat-gcctctacgcacgagccggattagtcgctcaccat 47078544  T
Q  135 ttgtgggtcggaaaccgatgcgaaag 160  Q
    | ||||||||||||||  ||||||||    
T  47078545 tggtgggtcggaaaccagtgcgaaag 47078570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 8889010 - 8889125
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt----atggcttctacgtacgagtcggattagtcgcccatttt 134  Q
    ||||||||| ||||| |||||||||||||||| ||||||| |||||| ||||| ||||    ||||| |||||| | ||| ||||||||||| |||  ||    
T  8889010 aaggacgtatccggggaataccgggttcgattcctagggggaacaacacttgggcagtgcgcatggc-tctacgcatgagccggattagtcgtccacctt 8889108  T
Q  135 ttgtgggtcggaaaccg 151  Q
    | |||||||||||||||    
T  8889109 tggtgggtcggaaaccg 8889125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 2559295 - 2559419
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||| ||| |||||||| ||||||||||||| | |||||||||||| ||||  |   || |||||| || || ||||||| ||| |||  |||    
T  2559295 aaggacgtacctggggaataccggattcgatttctaggaggaacaacgcttggccagtgcgcatgcctctacgcacaagccggattactcgtccaccttt 2559394  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||| ||||||||    
T  2559395 ggtgggtcggaaaccggtgcgaaag 2559419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 30317221 - 30317345
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    |||||||||| |||| |||| | |||||||||   || || |||||||||||| ||||| |   || |||||| ||||| || ||||||||||||  |||    
T  30317221 aaggacgtactcggggaatatcaggttcgattctcagagggaacaacgcttggccagtacgaatgcctctacgcacgagccgaattagtcgcccaccttt 30317320  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     |||||||||||||||||| |||||    
T  30317321 ggtgggtcggaaaccgatgtgaaag 30317345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 42722700 - 42722576
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    |||||||||||||||||||||||||||| ||| | ||| | |||||||||||| ||||  |   || |||||| | ||| |||||||||||  ||  |||    
T  42722700 aaggacgtacccgggaaataccgggttcaattcccaggaggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgttcaccttt 42722601  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     |||||||| |||||| ||||||||    
T  42722600 agtgggtcgaaaaccggtgcgaaag 42722576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 29588727 - 29588776
Alignment:
Q  42 gacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttgg 91  Q
    ||||| ||||||||||||||||||||||| | ||||||||||| ||||||    
T  29588727 gacgtgcccgggaaataccgggttcgattcccaggggaaacaaagcttgg 29588776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 43468339 - 43468392
Alignment:
Q  43 acgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||||| |||||||||||||||| | ||||| |||||||||||| ||||    
T  43468339 acgtacccggggaataccgggttcgattcccagggggaacaacgcttggccagt 43468392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 41339518 - 41339424
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgccca 130  Q
    ||||||||||||||  |||||||||||||| | | | ||| |||||||||||| |||| ||   || |||||| ||||| |||||||||||||||    
T  41339518 aaggacgtacccggagaataccgggttcgactcccaaggggaacaacgcttggccagtgtgtatgcctctacgcacgagacggattagtcgccca 41339424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 3159592 - 3159468
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||| ||||  |||||||||||||| ||| ||||| |||||||||||| ||||  |   || |||||| ||||| | |||||||||| ||   ||    
T  3159592 aaggacgtatccggagaataccgggttcgacttccagggggaacaacgcttggccagtgcgcatgcctctacgcacgagccagattagtcgctcaccatt 3159493  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||| ||| ||||    
T  3159492 ggtgggtcggaaaccggtgcaaaag 3159468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 29895775 - 29895899
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||| ||||| |||||||||||||||| | ||||| |||||| ||||| ||||  |   || |||||| | ||| ||||||||||| |||   ||    
T  29895775 aaggacgtatccggggaataccgggttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgtccaccatt 29895874  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     |||| |||||||||| ||||||||    
T  29895875 ggtggttcggaaaccggtgcgaaag 29895899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 38168245 - 38168368
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt---atggcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| |||||| ||||||||| ||| | | |||||||||||| ||||   || || |||||| | ||| |||||||||||  ||  |||    
T  38168245 aaggacgtacccggggaataccaggttcgattcctaagaggaacaacgcttggccagtgccat-gcctctacgcatgagccggattagtcgttcaccttt 38168343  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     |||||| |||||||| ||||||||    
T  38168344 agtgggttggaaaccggtgcgaaag 38168368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 1446814 - 1446871
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||| ||||| |||||||||||||||| | ||||| |||||| ||||| ||||    
T  1446814 aaggacgtatccggggaataccgggttcgattcccagggggaacaacacttggccagt 1446871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 10541020 - 10541061
Alignment:
Q  55 aataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    |||| ||||||||||||| |||||||||||||||||| ||||    
T  10541020 aatatcgggttcgatttccaggggaaacaacgcttggccagt 10541061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 31588741 - 31588798
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||| | ||| |||||||||||| || |||| |||| |||||||||||||||||||    
T  31588741 tctacgcatgagccggattagtcgctcacttttggtggatcggaaaccgatgcgaaag 31588798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 37369098 - 37369041
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||| ||||||||||| ||||||||| | || |||  |||||||||||||||||||    
T  37369098 tctacgcacgagtcggataagtcgcccactattggtgaatcggaaaccgatgcgaaag 37369041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 41163005 - 41162948
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||| ||||||||||||| |||||||||| || || |||||| ||||| ||||    
T  41163005 aaggacgtatccgggaaataccgagttcgatttccagagggaacaacacttggccagt 41162948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 47682438 - 47682381
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||| ||||| ||| |||||||||||  ||| ||||||||||||||| ||||||||    
T  47682438 tctacgcacgagccgggttagtcgcccacctttggtgggtcggaaaccggtgcgaaag 47682381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 50485998 - 50486055
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||| ||||| |||||||||||||||   || ||||||||||||||||||| ||||    
T  50485998 tctacgcacgagccggattagtcgcccaccattagtgggtcggaaaccgatgcaaaag 50486055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 52950070 - 52950127
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||||| ||| |||| ||||||||||| | ||||| |||||||||||| ||||    
T  52950070 aaggacgtacctggggaatatcgggttcgattcccagggggaacaacgcttggccagt 52950127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 53599048 - 53599105
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||||||||| |||||||||||||||| | ||| | ||||||| |||| ||||    
T  53599048 aaggacgtacccggggaataccgggttcgattcccaggaggaacaacgtttggccagt 53599105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 48834747 - 48834699
Alignment:
Q  112 gagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    ||||||||||||||||| |  ||| ||||||||||||||| ||||||||    
T  48834747 gagtcggattagtcgcctacctttggtgggtcggaaaccggtgcgaaag 48834699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 68503 - 68621
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgctt-ggtcagtatggcttctacgtacgagtcggattagtcgcccattttttg 137  Q
    |||||||||||||||||||| ||||||||||| | ||||| |||||||||| |||  | || || |||||| ||||| |||||||||||||||  ||| |    
T  68503 aaggacgtacccgggaaatatcgggttcgattcccagggggaacaacgcttgggtgcgcat-gcctctacgcacgagccggattagtcgcccacctttgg 68601  T
Q  138 tgggtcggaaaccgatgcga 157  Q
    ||||||| |||||| |||||    
T  68602 tgggtcgaaaaccggtgcga 68621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 556 - 680
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| ||||||||||||||||   ||||| |||||| |||| ||||| ||   || |||||||| ||| | |||||||||| ||  |||    
T  556 aaggacgtacccggggaataccgggttcgattcgcagggggaacaacacttgatcagtgtgcatgcctctacgtatgagccagattagtcgctcaccttt 655  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||| ||||||||    
T  656 ggtgggtcggaaaccggtgcgaaag 680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 319408 - 319465
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||| ||||| ||||||||||| |||||||||||| |||||||||||| ||||    
T  319408 aaggacgtatccggggaataccgggtttgatttctagggggaacaacgcttggccagt 319465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 412149 - 412092
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||| ||||| ||||||| ||||||||   ||||| |||||||||||||||||    
T  412149 aaggacgtatccggggaataccgagttcgattcacagggggaacaacgcttggtcagt 412092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 18915851 - 18915975
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||||||| |||||||||||||||| | ||||| |||||| ||||| |||| ||   || |||||| ||||| |||||||||||| ||   ||    
T  18915851 aaggacgtacccggggaataccgggttcgattcccagggggaacaacacttggccagtgtgcatgcctctacgcacgagccggattagtcgctcaccatt 18915950  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     |||||| |||||||| ||||||||    
T  18915951 ggtgggttggaaaccggtgcgaaag 18915975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 2981053 - 2980931
Alignment:
Q  41 ggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttg 137  Q
    ||||||| ||||| ||||| |||||||||| | || || |||||| ||||| |||| ||   || |||||| ||||||||||||||||| |||| ||| |    
T  2981053 ggacgtatccggggaatactgggttcgattcccagcgggaacaacacttggccagtgtgcatgcctctacgcacgagtcggattagtcgtccatgtttag 2980954  T
Q  138 tgggtcggaaaccgatgcgaaag 160  Q
    ||||||||||| || ||||||||    
T  2980953 tgggtcggaaatcggtgcgaaag 2980931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 40288601 - 40288487
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    |||||||||  |||| |||||||||||||||||| ||||| ||||||| |||| |||||||   || |||||  ||||| |||||||||||| |||  ||    
T  40288601 aaggacgtattcggggaataccgggttcgatttccagggggaacaacggttggccagtatgcatgcctctacacacgagccggattagtcgctcatcctt 40288502  T
Q  136 tgtgggtcggaaacc 150  Q
     ||||||||||||||    
T  40288501 ggtgggtcggaaacc 40288487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 43959942 - 43959821
Alignment:
Q  42 gacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttgt 138  Q
    |||||||||||| |||| ||||||| ||| | ||||| |||||||||||| ||||  |   || |||||| ||||| |||||||||||||||  ||| ||    
T  43959942 gacgtacccggggaatatcgggttcaattcccagggggaacaacgcttggccagtgcgcatgcctctacgcacgagccggattagtcgcccacctttagt 43959843  T
Q  139 gggtcggaaaccgatgcgaaag 160  Q
    || |||||||||| ||||||||    
T  43959842 ggatcggaaaccggtgcgaaag 43959821  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 30927851 - 30927727
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||||| |||||||| ||||||||||||| || || |||||||||||| || | ||   || |||||| | ||| ||||||||||| ||| ||||    
T  30927851 aaggacgtacctgggaaatatcgggttcgatttccagagggaacaacgcttggccaatgtgcatgcctctacgcatgagccggattagtcgtccactttt 30927752  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||| ||||||| ||| ||||    
T  30927751 ggtgggtcagaaaccggtgcaaaag 30927727  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 55 - 160
Target Start/End: Original strand, 15465965 - 15466073
Alignment:
Q  55 aataccgggttcgatttctaggggaaacaacgcttggtcagt----atggcttctacgtacgagtcggattagtcgcccattttttgtgggtcggaaacc 150  Q
    |||||| ||||||||||| ||||| |||||||||||||||||    || || |||||| ||||||| |||| ||||| ||  ||| ||||||||||||||    
T  15465965 aataccaggttcgatttccagggggaacaacgcttggtcagtgcacat-gcctctacgcacgagtctgattggtcgctcacctttggtgggtcggaaacc 15466063  T
Q  151 gatgcgaaag 160  Q
    ||| ||||||    
T  15466064 gatacgaaag 15466073  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 9853401 - 9853354
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacg 86  Q
    ||||| |||||||| ||||||||||||||||| |||||||||||||||    
T  9853401 aaggatgtacccggaaaataccgggttcgattcctaggggaaacaacg 9853354  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 41663980 - 41663856
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||| ||||| |||||||||||||||| | ||||| |||||| ||||||||||  |   || |||||| | |||  |||||||||| |||   ||    
T  41663980 aaggacgtatccggggaataccgggttcgattcccagggggaacaacacttggtcagtgcgcatgcctctacgcatgagctggattagtcgtccaccatt 41663881  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     ||||||||||||||| ||||||||    
T  41663880 ggtgggtcggaaaccggtgcgaaag 41663856  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 45536695 - 45536749
Alignment:
Q  42 gacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    |||||||||||  |||||||||||||||||||| ||| |||||||||||| ||||    
T  45536695 gacgtacccggagaataccgggttcgatttctaaggggaacaacgcttggccagt 45536749  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 49078098 - 49078155
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||| ||||| |||||||||||||||| | |||||||||||| ||||| ||||    
T  49078098 aaggacgtatccggggaataccgggttcgattcccaggggaaacaacacttggccagt 49078155  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 50371917 - 50371834
Alignment:
Q  80 aacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||||||||| ||||| |   ||||||||| || || |||||||||||||||| ||| |||| |||||||||| ||||||||    
T  50371917 aacaacgcttggccagtacgcatgcttctacgcacaagccggattagtcgcccatctttggtggatcggaaaccggtgcgaaag 50371834  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 3850801 - 3850742
Alignment:
Q  101 cttctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||||| ||||| |||||||||||||||  |||  |||||||||||||| ||||||||    
T  3850801 cttctacgcacgaggcggattagtcgcccacctttaatgggtcggaaaccggtgcgaaag 3850742  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 34697330 - 34697443
Alignment:
Q  50 cgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttgtgggtcgga 146  Q
    |||| |||||| |||||||||  |||||| |||||| |||||  ||| ||   || |||||| | ||| ||||||||||||||| ||||  ||||| |||    
T  34697330 cggggaataccaggttcgattcttagggggaacaacacttggctagtgtgcatgcctctacgcatgagccggattagtcgcccacttttgatgggttgga 34697429  T
Q  147 aaccgatgcgaaag 160  Q
    ||||||||||||||    
T  34697430 aaccgatgcgaaag 34697443  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 33004139 - 33004015
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    ||||||||| ||||| |||| ||| ||||||||| ||||||||||| |||||| ||||  |   || |||||| ||||| |||||||||| ||||    |    
T  33004139 aaggacgtatccggggaatatcggattcgatttccaggggaaacaatgcttggccagtgcgcatgcctctacgcacgagccggattagtcacccaccaat 33004040  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
     |||||||| |||||| ||||||||    
T  33004039 ggtgggtcgaaaaccggtgcgaaag 33004015  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 31152700 - 31152757
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||| |||||| || ||||||||||||||||||  |||| || ||||||||||||||    
T  31152700 aaggatgtacccagggaataccgggttcgatttcccgggggaataacgcttggtcagt 31152757  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 34334419 - 34334362
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||| ||||| |||||||||||||||| | ||||| |||||| ||||| ||||    
T  34334419 aaggacgtatccggggaataccgggttcgattcccagggggaacaacacttggccagt 34334362  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 48798191 - 48798143
Alignment:
Q  42 gacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttg 90  Q
    |||||| ||||| |||| ||||||||||||| ||||| |||||||||||    
T  48798191 gacgtatccggggaatatcgggttcgatttccagggggaacaacgcttg 48798143  T

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Target: scaffold0376 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 12656 - 12780
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 135  Q
    |||||||| |||||| ||||||||||||||||   ||| | |||||||||||| |||| ||   || |||||| ||||  |||||||||||||||  |||    
T  12656 aaggacgtgcccggggaataccgggttcgattcagaggaggaacaacgcttggccagtgtgcatgcctctacgcacgaaccggattagtcgcccaccttt 12755  T
Q  136 tgtgggtcggaaaccgatgcgaaag 160  Q
      |||||| ||||||| ||||||||    
T  12756 gatgggtcagaaaccggtgcgaaag 12780  T

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Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 41032 - 41154
Alignment:
Q  41 ggacgtacccgggaaataccgggttcgatt-tctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccatttttt 136  Q
    |||||||| | || |||| ||||||||||| || ||||||| |||| |||||||||| ||   || |||||| ||||| |||||||||||||||| |||     
T  41032 ggacgtactcagggaatatcgggttcgattctcaaggggaa-caacacttggtcagtgtgcatgcctctacgcacgagccggattagtcgcccatctttg 41130  T
Q  137 gtgggtcggaaaccgatgcgaaag 160  Q
    ||| ||||||||||| | ||||||    
T  41131 gtgagtcggaaaccggttcgaaag 41154  T

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Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 224370 - 224427
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||| ||||| ||||||||||| |||| ||| ||||||||||||||| ||||||||    
T  224370 tctacgcacgagccggattagtcgtccatctttggtgggtcggaaaccggtgcgaaag 224427  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 271197 - 271140
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||||||||  |||| ||||||||||| | ||||| |||||||||||||||||    
T  271197 aaggacgtacccggagaatatcgggttcgattcccagggggaacaacgcttggtcagt 271140  T

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Target: scaffold0086 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 26169 - 26259
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcg 126  Q
    |||||| |||| ||| ||||| |||||||||||| ||||| |||||||||||| |||| ||   || |||||| ||||| |||||||||||    
T  26169 aaggacatacctggggaatactgggttcgatttccagggggaacaacgcttggccagtgtgcatgcctctacgcacgagccggattagtcg 26259  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 42949 - 42831
Alignment:
Q  45 gtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttgtggg 141  Q
    ||||| ||| |||| ||||||||||| ||||||  ||||| |||||||||||  |   || |||||  | ||| |||||||||||||||  ||| |||||    
T  42949 gtacctggggaatatcgggttcgattcctagggagaacaatgcttggtcagtgcgcatgcctctacacatgagccggattagtcgcccacctttggtggg 42850  T
Q  142 tcggaaaccgatgcgaaag 160  Q
    |||||||||| ||||||||    
T  42849 tcggaaaccggtgcgaaag 42831  T

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Target: scaffold0009; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 9422 - 9480
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagta 97  Q
    ||||||||||  ||| |||||||||||||||| | ||||| |||||||||||| |||||    
T  9422 aaggacgtacttggggaataccgggttcgattcccagggggaacaacgcttggccagta 9480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 15317 - 15359
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaa 81  Q
    ||||| ||||||||| |||||||||||||||||| ||||||||    
T  15317 aaggaagtacccggggaataccgggttcgatttccaggggaaa 15359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 12561 - 12653
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgccca 130  Q
    |||||||||| || |||||||||||||||||| ||||||  |||||||||||  ||||  |   || |||||| | |||||||||||||||||||    
T  12561 aaggacgtactcgagaaataccgggttcgattcctaggg--aacaacgcttgaccagtgcgcatgcctctacgcatgagtcggattagtcgccca 12653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 8161 - 8217
Alignment:
Q  39 aaggacgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggtcagt 96  Q
    ||||||||||||||| |||||||||||||||| | | ||| |||||||||||| ||||    
T  8161 aaggacgtacccggggaataccgggttcgattcccaaggg-aacaacgcttggccagt 8217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 155767 - 155710
Alignment:
Q  103 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 160  Q
    |||||| ||||| |||||||||||||||  ||| ||||||||||| ||| ||||||||    
T  155767 tctacgcacgagccggattagtcgcccacctttggtgggtcggaagccggtgcgaaag 155710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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