View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_high_2 (Length: 918)

Name: NF1199_high_2
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_high_2
NF1199_high_2
[»] chr5 (9 HSPs)
chr5 (579-911)||(2692694-2693030)
chr5 (30-222)||(3380338-3380530)
chr5 (430-510)||(2692545-2692625)
chr5 (724-870)||(2684504-2684647)
chr5 (305-431)||(40230907-40231035)
chr5 (430-505)||(2678954-2679029)
chr5 (30-133)||(3380315-3380418)
chr5 (631-690)||(2679169-2679228)
chr5 (122-219)||(3380453-3380550)
[»] chr4 (2 HSPs)
chr4 (250-432)||(16899505-16899687)
chr4 (250-432)||(18348020-18348202)
[»] chr3 (1 HSPs)
chr3 (250-432)||(13236289-13236471)
[»] chr1 (2 HSPs)
chr1 (254-429)||(6352268-6352442)
chr1 (293-429)||(10404067-10404203)
[»] scaffold1079 (1 HSPs)
scaffold1079 (250-432)||(512-691)
[»] chr2 (1 HSPs)
chr2 (327-432)||(42203278-42203382)
[»] scaffold0002 (2 HSPs)
scaffold0002 (343-430)||(197865-197952)
scaffold0002 (351-430)||(256308-256387)
[»] chr8 (1 HSPs)
chr8 (749-820)||(40924779-40924850)
[»] chr7 (1 HSPs)
chr7 (223-252)||(10412115-10412144)


Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 579 - 911
Target Start/End: Original strand, 2692694 - 2693030
Alignment:
Q  579 ctattgcttgttcaaacagccatgtgaatggtcaggttgataaacgtcgtactggaatgctcccgtttgttttttatgatacttttgggtatgtttatct 678  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2692694 ctattgcttgttcaaacagccatgtgaatggtcaggttgataaacgccgtactggaatgctcccgtttgttttttatgatacttttgggtatgtttatct 2692793  T
Q  679 ttacttttctaagttttaaataaaattcaaacacaaaaagtgtggtttgatttggtgtgtgattttgcaacaggtttgagcagtttgttgattatgctct 778  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2692794 ttacttttctaagttttaaataaaattcaaacacaaaaagtgtggtttgatttggtgtgtgattttgcaacaggtttgagcagtttgttgattatgctct 2692893  T
Q  779 tgatgtaccaatgatatttgtgtatcgaaaaaataaatatattccatgtggtggcatgtcattccgggttattatcttttatttcttaaactatct---- 874  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  2692894 tgatgtaccaatgatatttgtgtatcgaaaaaataaatatattccatgtggtggcatgtcattccgggttattatcttttatttcttaaactatctatcc 2692993  T
Q  875 atccattacgtgttattttttcctttaatattgttgg 911  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  2692994 atccattacatgttgttttttcctttaatattgttgg 2693030  T

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Target: chr5; HSP #2
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 30 - 222
Target Start/End: Complemental strand, 3380530 - 3380338
Alignment:
Q  30 gttgatctgcgcgcagccgtgaatttcatgaggccaggcgtgacagacagttttggccactgtttaaatacgcccaggcgtattttacacggtccaaggt 129  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  3380530 gttgatctgcacccagccgtgaatttcatgaggccaggcgtgacagacagttttggccactgtttaaatacacccaggtgtattttacacggtccaaggt 3380431  T
Q  130 agttctgaagctgttgatatgcacccaggcgtcaattgcatgaggccagacgtgatagagaagattgggcactgttcaaatacgcccaggcgt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3380430 agttctgaagctgttgatatgcacccaggcgtcaattgcatgaggccaggcgtgatagagaagattgggcactgttcaaatacgcccaggcgt 3380338  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 430 - 510
Target Start/End: Original strand, 2692545 - 2692625
Alignment:
Q  430 cagttagcaacagccttattttcaaattcacctttcatgcaaggagctccaaatggttatgtcagctttagaaggtgtata 510  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  2692545 cagttagcaacagctttattttcaaattcacctttcaagcaaggagctccaaacggttatgtcagctttagaaggtgtata 2692625  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 724 - 870
Target Start/End: Original strand, 2684504 - 2684647
Alignment:
Q  724 tttgatttggtgtgtgattttgcaacaggtttgagcagtttgttgattatgctcttgatgtaccaatgatatttgtgtatcgaaaaaataaatatattcc 823  Q
    ||||||||| |||||| || | | ||||||||||||| ||| |||| ||||||||||||||||| ||| ||||| | ||||||||||||| ||||||| |    
T  2684504 tttgatttgttgtgtgcttctcctacaggtttgagcaatttattgactatgctcttgatgtaccgatggtatttatttatcgaaaaaatagatatattgc 2684603  T
Q  824 atgtggtggcatgtcattccgggttattatcttttatttcttaaact 870  Q
     ||||||||||||||||||||||   | ||||| |||||||||||||    
T  2684604 ttgtggtggcatgtcattccggg---taatcttctatttcttaaact 2684647  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 305 - 431
Target Start/End: Original strand, 40230907 - 40231035
Alignment:
Q  305 tattcgtattgagactggaactcatagggaagaaaatagatttatgaatggaataaaatatgcaata-tttacagacaaaagtattcggttattggg-aa 402  Q
    ||||| |||||||||| |||||||| ||||||||||||||||| ||| |  ||| |||||||   || |||| ||||||||||||| |||||||||| ||    
T  40230907 tattcttattgagactagaactcatcgggaagaaaatagatttgtgagttcaatgaaatatgtggtattttatagacaaaagtatttggttattgggaaa 40231006  T
Q  403 aaaatcaatatacttttaatgtcgaatca 431  Q
    |||||||||| |||||||| |||||||||    
T  40231007 aaaatcaatacacttttaacgtcgaatca 40231035  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 430 - 505
Target Start/End: Original strand, 2678954 - 2679029
Alignment:
Q  430 cagttagcaacagccttattttcaaattcacctttcatgcaaggagctccaaatggttatgtcagctttagaaggt 505  Q
    |||||| |||| || |||||| | ||||||||||||| |||||||| ||||||||||||||||||||| |||||||    
T  2678954 cagttatcaactgcattatttgcgaattcacctttcaagcaaggagttccaaatggttatgtcagcttaagaaggt 2679029  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 3380418 - 3380315
Alignment:
Q  30 gttgatctgcgcgcagccgtgaatttcatgaggccaggcgtgacagacagttttggccactgtttaaatacgcccaggcgtattttacacggtccaaggt 129  Q
    |||||| ||| | ||| ||| |||| ||||||||||||||||| ||| |   |||| ||||||| ||||||||||||||||| |||||||| ||||||||    
T  3380418 gttgatatgcacccaggcgtcaattgcatgaggccaggcgtgatagagaagattgggcactgttcaaatacgcccaggcgtagtttacacgctccaaggt 3380319  T
Q  130 agtt 133  Q
    ||||    
T  3380318 agtt 3380315  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 631 - 690
Target Start/End: Original strand, 2679169 - 2679228
Alignment:
Q  631 tggaatgctcccgtttgttttttatgatacttttgggtatgtttatctttacttttctaa 690  Q
    |||||||||||| |||| |||| ||||||||||||||||||||||  |||||||||||||    
T  2679169 tggaatgctcccatttgcttttcatgatacttttgggtatgtttacatttacttttctaa 2679228  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 3380550 - 3380453
Alignment:
Q  122 tccaaggtagttctgaagctgttgatatgcacccaggcgtcaattgcatgaggccagacgtgatagagaagattgggcactgttcaaatacgcccagg 219  Q
    ||||||| ||||||  |||||||||| ||||||||| ||| |||| ||||||||||| ||||| ||| |   |||| ||||||| |||||| ||||||    
T  3380550 tccaaggaagttctacagctgttgatctgcacccagccgtgaatttcatgaggccaggcgtgacagacagttttggccactgtttaaatacacccagg 3380453  T

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Target: chr4 (Bit Score: 179; Significance: 4e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 250 - 432
Target Start/End: Complemental strand, 16899687 - 16899505
Alignment:
Q  250 aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttat 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16899687 aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttat 16899588  T
Q  350 gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16899587 gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 16899505  T

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Target: chr4; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 250 - 432
Target Start/End: Complemental strand, 18348202 - 18348020
Alignment:
Q  250 aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttat 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18348202 aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttat 18348103  T
Q  350 gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 432  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18348102 gaatggaataaaaaatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 18348020  T

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Target: chr3 (Bit Score: 175; Significance: 1e-93; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 250 - 432
Target Start/End: Original strand, 13236289 - 13236471
Alignment:
Q  250 aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttat 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13236289 aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttat 13236388  T
Q  350 gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 432  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13236389 gaatggaataaaaaatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 13236471  T

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Target: chr1 (Bit Score: 144; Significance: 3e-75; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 254 - 429
Target Start/End: Original strand, 6352268 - 6352442
Alignment:
Q  254 aattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttatgaat 353  Q
    ||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6352268 aattggtgtggtagattcaaattttaatatatgaatagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttatgaat 6352367  T
Q  354 ggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaat 429  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  6352368 ggaataaaatatgtaatatttacagacaaaagtattc-attattgggaaaaaatcaatatacttttaatgtcgaat 6352442  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 293 - 429
Target Start/End: Complemental strand, 10404203 - 10404067
Alignment:
Q  293 aaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcgg 392  Q
    |||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  10404203 aaataaaactagtattggtattgagactagaaatcatagggaagaaaatagatttatgaatggaataaaatatataatatttacaaacaaaagtattcgg 10404104  T
Q  393 ttattgggaaaaaatcaatatacttttaatgtcgaat 429  Q
    |||||||||||||||||||||||||||||||||||||    
T  10404103 ttattgggaaaaaatcaatatacttttaatgtcgaat 10404067  T

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Target: scaffold1079 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold1079
Description:

Target: scaffold1079; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 250 - 432
Target Start/End: Complemental strand, 691 - 512
Alignment:
Q  250 aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttat 349  Q
    ||||||||||||||||| ||||| ||   || |||||||||||||    |||||| |||| |||||||||| ||||||||||||||||||||||||||||    
T  691 aacgaattggtgtggtatattcatatcataacatatgaacagtaag---aactagcattcttattgagactcgaactcatagggaagaaaatagatttat 595  T
Q  350 gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 432  Q
    | ||||||| ||||||  | || ||||||||||||||||||||||| |||  |||||||||||||||| ||||||||||||||    
T  594 ggatggaatcaaatatatagtagttacagacaaaagtattcggttagtggtgaaaaatcaatatacttctaatgtcgaatcag 512  T

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Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 327 - 432
Target Start/End: Original strand, 42203278 - 42203382
Alignment:
Q  327 catagggaagaaaatagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcg 426  Q
    |||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||||    
T  42203278 catatggaaaaaaatagatttatgaatggaataatatatgcaatatttacagacaaaagtgttcggttatt-gtaaaaattcaatatacttttaatgtcg 42203376  T
Q  427 aatcag 432  Q
    ||||||    
T  42203377 aatcag 42203382  T

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Target: scaffold0002 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 343 - 430
Target Start/End: Original strand, 197865 - 197952
Alignment:
Q  343 gatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatc 430  Q
    |||||||| ||||||| ||||| ||| |||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  197865 gatttatggatggaatcaaatacgcagtatttacagaaaaaagtcttcgtttattgggaaagaatcaatatacttttaatgtcgaatc 197952  T

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Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 351 - 430
Target Start/End: Original strand, 256308 - 256387
Alignment:
Q  351 aatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatc 430  Q
    |||||||| ||||| ||| |||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  256308 aatggaatcaaatacgcagtatttacagaaaaaagtcttcgtttattgggaaagaatcaatatacttttaatgtcgaatc 256387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 820
Target Start/End: Complemental strand, 40924850 - 40924779
Alignment:
Q  749 caggtttgagcagtttgttgattatgctcttgatgtaccaatgatatttgtgtatcgaaaaaataaatatat 820  Q
    ||||||||||||||  ||||||| |||||||||||| ||||||   ||||| ||||| ||||| ||||||||    
T  40924850 caggtttgagcagtacgttgattttgctcttgatgttccaatgtattttgtctatcggaaaaagaaatatat 40924779  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 252
Target Start/End: Complemental strand, 10412144 - 10412115
Alignment:
Q  223 tgttgaaatagattcggaaacggaagaaac 252  Q
    ||||||||||||||||||||||||||||||    
T  10412144 tgttgaaatagattcggaaacggaagaaac 10412115  T

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