View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_20 (Length: 592)
Name: NF1199_high_20
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 30 - 579
Target Start/End: Complemental strand, 5681116 - 5680567
Alignment:
| Q |
30 |
attttagatcatacgagaataaataatttcataattgtgatttgttgggaagtggttgacacaacacaacgtactaagcgggcatggatggattaaaaac |
129 |
Q |
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| T |
5681116 |
attttagatcatacgagaataaatgatttcataattgtgatttgttgggaagtggttgacacaacacaacgtactaagcgggcatggatggattaaaaac |
5681017 |
T |
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| Q |
130 |
gaagtatagcagcaatgttgatatggggtagccttttattaatggattttgactaatttatatgtaagaacaatttatacgtaccgcataatttggattt |
229 |
Q |
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| T |
5681016 |
gaagta--gcagcaatgttgatatggggtagccttttattaatggattttgactaatttatatgtaagaacaatttatacgtaccgcataatttggattt |
5680919 |
T |
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| Q |
230 |
tgaaatatccaatttagacaatgtaacgatcagacaggaaaatcctacttatatgaatcgatgtaagccatatctatgattagtttgcactaaggtgatt |
329 |
Q |
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| T |
5680918 |
tgaaatatccaatttagacaatgtaactatcagacaggaaaatcctacttatatgaatcgatgtaagccatatctatgattagtctgcactaaggtgatt |
5680819 |
T |
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| Q |
330 |
cagattttgaaatatccaatctgagtattaaatgatcagacagaaaaatccatgattagtcattcaataagggacccttatcatgcatgatgtgaaaaca |
429 |
Q |
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| T |
5680818 |
cagattttgaaatatccaatcagagtattaaatgatcagacagaaaaatccatgattagtcattcaataagggacccttatcatgcatgatgtgaaaaca |
5680719 |
T |
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| Q |
430 |
cgaacctaaaccatgtctctgatgtgtactagagcaaggttttcattattatgggagcaccaattattgcagatggcatctaccattcttacacacagca |
529 |
Q |
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| T |
5680718 |
cgaacctaaaccatgtctctgatgtgtactagagcaaggttttcattattatgggagcaccaattattgcagatggcatctaccattcttacacacagca |
5680619 |
T |
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| Q |
530 |
actatggaaattaacacatactgtatgaagtatata--tataatcagcagaa |
579 |
Q |
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| T |
5680618 |
actatggaaattaacgcatactgtatgaagtatatatatataatcagcagaa |
5680567 |
T |
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