View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_21 (Length: 586)
Name: NF1199_high_21
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 69 - 531
Target Start/End: Complemental strand, 48063413 - 48062952
Alignment:
| Q |
69 |
gagtgagatgaaatggttaaagtacttgtttttatgtgcttagatatttgttgactgaaatcaacttgcatgcagagcgagaatccaattgtggaattat |
168 |
Q |
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| T |
48063413 |
gagtgaaatgaaatggttaaagtacttgtttttatgtgcttagatatttgttgactgaaatcaacttgcatgcagagtgagaatccaattgtggaattat |
48063314 |
T |
|
| Q |
169 |
gggttcatagtgtctccttacaaccattcaccagagagcaatggaggtcacaccaagatagcagcattgagagggtaagctaatgcttatattgttttca |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48063313 |
gggttcatagtgtctccttacaaccattcaccagagagcaatggaggtcacaccaagatagcagcattgagagggtaagctaatgcttatattgttttca |
48063214 |
T |
|
| Q |
269 |
catagacacctgtgctttgcaccaggggatgaatcgttgcttttatttttgtattactagtactaccatcacgactctcggcctcgcagaccaatagtca |
368 |
Q |
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| T |
48063213 |
catagatacctgtgctttgcaccaggggatgaatcgttgcttttatttttgtattactagtactaccatcacgactctcggcctcgcagaccaatagtca |
48063114 |
T |
|
| Q |
369 |
agcatgttgtcattaagaggaacaaactcaatagcataccaaattgcataatgaaaatcagtagtagatgtatagcagaaaaaatgcttaagttaatctg |
468 |
Q |
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| T |
48063113 |
agcatgttgtcattaagaggaacaaactcaatagcataccaaattgcataatgaaaatcagtagtagatgtatagcagaaaaaatgcttaagtt-atctg |
48063015 |
T |
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| Q |
469 |
atttataacctacaggtacgtaagagcagggtgagattccaggtaactcatccaaatgaaaca |
531 |
Q |
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| T |
48063014 |
atttataacctacaggtacgtaagagcagggtgagattccaggtaactcatccaaatgaaaca |
48062952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 138 - 250
Target Start/End: Complemental strand, 48100355 - 48100243
Alignment:
| Q |
138 |
atgcagagcgagaatccaattgtggaattatgggttcatagtgtctccttacaaccattcaccagagagcaatggaggtcacaccaagatagcagcattg |
237 |
Q |
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|||||| |||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||| | |||||||| ||||| ||||| ||| ||| |
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| T |
48100355 |
atgcagtgcgagaatccaactgtggaactatgggctgatagtgtctccttacaaccattcaccaagaaacaatggagatcacagcaagacgatagcgttg |
48100256 |
T |
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| Q |
238 |
agagggtaagcta |
250 |
Q |
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||||||||||||| |
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| T |
48100255 |
agagggtaagcta |
48100243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 158 - 252
Target Start/End: Complemental strand, 48067287 - 48067193
Alignment:
| Q |
158 |
tgtggaattatgggttcatagtgtctccttacaaccattcaccagagagcaatggaggtcacaccaagatagcagcattgagagggtaagctaat |
252 |
Q |
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| T |
48067287 |
tgtggaattatggactgatagtgtctctttacaaccattcaacaaaacacaatggagatcacaccaagccgacagcattgagagggtaagctaat |
48067193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 520
Target Start/End: Complemental strand, 48100050 - 48099997
Alignment:
| Q |
467 |
tgatttataacctacaggtacgtaagagcagggtgagattccaggtaactcatc |
520 |
Q |
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| T |
48100050 |
tgatttataaactgcaggtacgcaagagcaaggtgagattccatgtaactcatc |
48099997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 48107005 - 48106909
Alignment:
| Q |
158 |
tgtggaattatgggttcatagtgtctccttacaaccattcaccagagagcaatggaggtcacaccaagatagcagcattgagagggtaagctaatgc |
254 |
Q |
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||||||| |||||| | ||||||| ||||| |||||||| || | | || ||||||| ||||||||||| | || ||||| ||||||||||||||| |
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| T |
48107005 |
tgtggaaatatgggctgatagtgtgtccttgcaaccatttactaaaaaggaatggagatcacaccaagacaacaatattgaaagggtaagctaatgc |
48106909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 533
Target Start/End: Complemental strand, 48067100 - 48067039
Alignment:
| Q |
472 |
tataacctacaggtacgtaagagcagggtgagattccaggtaactcatccaaatgaaacatc |
533 |
Q |
| |
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|||| ||| |||||||||||||||| ||||| |||||| |||| ||||| ||| |||||||| |
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| T |
48067100 |
tatatcctgcaggtacgtaagagcaaggtgacattccaagtaaatcatctaaacgaaacatc |
48067039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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