View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_24 (Length: 584)
Name: NF1199_high_24
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 10 - 331
Target Start/End: Original strand, 41524732 - 41525053
Alignment:
| Q |
10 |
attattctttgaagttattttaattggaaaatgatggtgacctaaggccactggcttatgtcggtatcgtttattaaaaatattcttaggaggcctcaaa |
109 |
Q |
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| T |
41524732 |
attattctttgaagttattttaattggaaaatgatggtgacccaaggccactggcttatgtcggtatcgtttattaaaaatattcttaggaggcctcaaa |
41524831 |
T |
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| Q |
110 |
agtcactagcttttggccagtcttaaattggtttatggttaagataataagaacgtccgaaaaatacatgtcgggaagaaaatggctatcattaaattta |
209 |
Q |
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| T |
41524832 |
agtcactagcttttggccagtcttaaattggtttatggttaagatgatgagaacgtccgaaaaatacatgtcgggaagaaaatggctatcattaaattta |
41524931 |
T |
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| Q |
210 |
cgtaaataaaataaaataaatatcggcttatacatttacagagccaaatgctgctaaatcttaataactttattagacttttgattaatgtcccaaaggg |
309 |
Q |
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| T |
41524932 |
cgtaaataaaataaaattaatatcggcttatacatttacagagccaaatgctgctaaatcttaataactttattagacttttgattaatgtcccaaaggg |
41525031 |
T |
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| Q |
310 |
aaaagaaaaccacaaaaaacta |
331 |
Q |
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| T |
41525032 |
aaaagaaaaccacaaaaaacta |
41525053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 389 - 555
Target Start/End: Original strand, 41525111 - 41525277
Alignment:
| Q |
389 |
aacaaaattacagctttagtgtaactgagagatttcccctgtagaagaggggatgggttagtgcttgctccttatgtagaagaaacaatacttgttgtcc |
488 |
Q |
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| T |
41525111 |
aacaaaattacagctttagtgtaactgagagatttcccctgtagaagaggggatgggttagtgcttgctccttatgtagaagaaacaatacttgttgtcc |
41525210 |
T |
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| Q |
489 |
tatgatcttcattttttgtatatatgatacttcctaattcatgaattttcggcaatttggagcttta |
555 |
Q |
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| T |
41525211 |
tatgatcttcattttttgtatatataatacttcctaattcatgaattttcggcaatttggagcttta |
41525277 |
T |
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