View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_32 (Length: 532)
Name: NF1199_high_32
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 11 - 503
Target Start/End: Complemental strand, 54253099 - 54252609
Alignment:
| Q |
11 |
caaaggtagtagaaggaattaaataaacttcccaatgccatacataccctaaaccgtacagtacacacacaaaaaagcattcaccaaccattcatttttt |
110 |
Q |
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| T |
54253099 |
caaaggtagtagaaggaattaaataaacttcccaatgccatacataccctaaaccgtacagtacacacacaaaaaagcattcaccaaccattcatttttt |
54253000 |
T |
|
| Q |
111 |
ctcaatttattttcttctttacattaaattattattactagctagcaaccaagaccacattacattacattatataaacattatgtttggacagacaatc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
54252999 |
ctcaatttattttcttctttacattaaattattattactagctagcaaccaagaccacattacattacattata--aacattatgtttggacaggcaatc |
54252902 |
T |
|
| Q |
211 |
aaagtgggacagccattgtgcagagagttgcagtaagcttcttgaaaaaacaaacacccttttcaatacatccacatttcttgccttcttctcttacgac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54252901 |
aaagtgggacagccattgtgcagagagttgcagtaagcttcttgaaaaaacaaacacccttttcaatacatccacatttcttgccttcttctcttacgac |
54252802 |
T |
|
| Q |
311 |
aattcttcttagtttcattcatccattcaactccaatacaaacaaacatgcaccacccttcttttctcatcttttcattttcacaccctccttcacttta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54252801 |
aattcttcttagtttcattcatccattcaactccaatacaaacaaacatgcaccccccttcttttctcatcttttcattttcacaccctccttcacttta |
54252702 |
T |
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| Q |
411 |
ataccatcaacttgtgatgatggtagggtaccgttggaagaagttgaagcttaagcacaagtacaagatggagatgtctttgcctgtggttgc |
503 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54252701 |
ataccatcaacttgtgatgatggtagtgtaccgttggaagaagttgaagcttaagcacaagtacaagatggagatgtctttgcctgtggttgc |
54252609 |
T |
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