View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_38 (Length: 522)
Name: NF1199_high_38
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Original strand, 26484464 - 26484891
Alignment:
| Q |
16 |
attgcaggcaaagctggaatgcttgatgaaattattaactatgttcagtctcttcaaagacaagtcgaggttagagttctagtcctgtttgatctatcat |
115 |
Q |
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| T |
26484464 |
attgcaggcaaagctggaatgcttgatgaaattattaactatgttcagtctcttcaaagacaagtcgaggttagagttctagtcctgtttgatctatcat |
26484563 |
T |
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| Q |
116 |
gttttagtttataatatggtatctattttaagaata----------------actgaactgtacattatcaccaaatgcagttcttgtcaatgaaattag |
199 |
Q |
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| T |
26484564 |
gttttagtttataatatggtatctattttaagaatagtttcaagtccatctaactgaactgtacattatcaccaaatgcagttcttgtcaatgaaattag |
26484663 |
T |
|
| Q |
200 |
cagctgtaaacccaagacttgacttcaacattgatgaattgtttgccaaagaggtaaggacaatgcaagttgtagaaatttaaggttgtatcagctacat |
299 |
Q |
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| T |
26484664 |
cagctgtaaacccaagacttgacttcaacattgatgaattgtttgccaaagaggtaaggacaatgcaagttgtagaaatttaaggctgtatcagctacat |
26484763 |
T |
|
| Q |
300 |
ttgaccgtaattaaagcttatgagtcaacatttgaccgcgattatccacagtatcgcgaatcacaacacagccataaattattttagaatgcatgctgaa |
399 |
Q |
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| T |
26484764 |
ttgaccgtaattaaagcttatgagtcaacatttgaccgcgattatccacagtatcgcgaatcacaacacagccataaattattttagaatgcatgctg-a |
26484862 |
T |
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| Q |
400 |
agtgctcctaaattatttcatctttacag |
428 |
Q |
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| T |
26484863 |
agtgctcctaaattatttgatctttacag |
26484891 |
T |
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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 54616054 - 54616120
Alignment:
| Q |
20 |
caggcaaagctggaatgcttgatgaaattattaactatgttcagtctcttcaaagacaagtcgaggt |
86 |
Q |
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| T |
54616054 |
caggaaaagctggaatgcttgatgaaatcattaactatgttcagtctcttcaaaaacaagttgaggt |
54616120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 54616190 - 54616250
Alignment:
| Q |
176 |
tgcagttcttgtcaatgaaattagcagctgtaaacccaagacttgacttcaacattgatga |
236 |
Q |
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| T |
54616190 |
tgcagttcttgtcaatgaaattagctactgtgaatccaaggcttgatttcaatattgatga |
54616250 |
T |
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