View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_39 (Length: 516)
Name: NF1199_high_39
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 262 - 413
Target Start/End: Complemental strand, 10252307 - 10252156
Alignment:
| Q |
262 |
ttatattataagtggtagcatgaacttactaaacctttgatctatgctactaagttatattgcctcttaaactaagtgctctctccattacgttttacct |
361 |
Q |
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| T |
10252307 |
ttatattataagtggtagcatgaacttactaaacctttgatctatgctactaagttatattgcctcttaaactaagtgctctctccattacgttttacct |
10252208 |
T |
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| Q |
362 |
tagaatcaaatcatattttcagtagtccatatcatgaatagcatagaggggt |
413 |
Q |
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| T |
10252207 |
tagaatcaaatcatattttcagtagtccatatcatgaatagcatagaggggt |
10252156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 962258 - 962376
Alignment:
| Q |
7 |
ttaattttattttctcattatttttccaaaagaaaaatgtgcactaaacattagggatgtgccacgtcttcatattcttgagggtcctaaattctaatat |
106 |
Q |
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| T |
962258 |
ttaattttattttctcattatttttccaaaagaaaaatgtgcactaaacattagggatgtgccacgtcttcatattcttgagggtcctaaattctaatat |
962357 |
T |
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| Q |
107 |
atgtgtatatatatatagc |
125 |
Q |
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| T |
962358 |
atgtgtgtatatatatagc |
962376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 962395 - 962515
Alignment:
| Q |
150 |
cattgaaagttcatagaagctaatcactaccatcaagaacaaatccatatatcataaatattaaacacattattaatcttttttatcttttgctaactac |
249 |
Q |
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| T |
962395 |
cattgaaagttcatagaagctaatcactaccatcaagaacaaatcca-atatcataaatattaaacacattattaatcttttttatcttttgctaactac |
962493 |
T |
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| Q |
250 |
tattctaaagatttatattata |
271 |
Q |
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| T |
962494 |
cattctaaagatttatattata |
962515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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