View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_41 (Length: 512)
Name: NF1199_high_41
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_41 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 30 - 504
Target Start/End: Complemental strand, 24698102 - 24697616
Alignment:
| Q |
30 |
aagagctcacacaaattatgttagtggacggttgttttctgttagagcttctgatagaaaagggattatatgaagtaccagagtcagtagtatgcagc-- |
127 |
Q |
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| T |
24698102 |
aagagctcacacaaattatgttagtggacggttgttttctgttagagcttctgatagaaaagggattatatgaagtaccagagtcagtagtagacagccc |
24698003 |
T |
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| Q |
128 |
-ttctttcctggtccagcaattgaactgctgagagatgaagatgtcttgtctgatctcaccttgttggagaaccagataccgattcggatcatctacttg |
226 |
Q |
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| T |
24698002 |
cttctttcctggtccagcaattgaactgctgagagatgaagatgtcttgtctgatctcaccttgttggagaaccagataccgattcggatcatctacttg |
24697903 |
T |
|
| Q |
227 |
ctgcttagaacactttttcctgagttgactggatattctacttcggagggtgagaccaatattaataatcttatcctgtttattttaggctatcgtcaag |
326 |
Q |
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| T |
24697902 |
ctgcttagaacactttttcctgagttgactggatattctacttccgagggtgagaccaaaattaataatcttatcctgtttgttttaggctatcgtcaag |
24697803 |
T |
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| Q |
327 |
atcggattctggac---------attcgaggtgatcatattcttgatattgtcaacttattcgttaactgggtttttaataaaaattaacgaattcttga |
417 |
Q |
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| T |
24697802 |
gtcggattctggacattctggacattcgaggtgatcatattcttgatattgtcaacttattcgttaactgggtttttaataaaaattaacgaattcttga |
24697703 |
T |
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| Q |
418 |
cattcgttaacttattcttgacagtcatgtttgttttaggctatcatccaggtccggttctgagcattcatggtgatcatattcttg |
504 |
Q |
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| T |
24697702 |
cattcgttaacttattcttgacagtcatgtttgttttaggctatcatccaggtccggttctgagcattcatggtgatcatattcttg |
24697616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 133 - 207
Target Start/End: Original strand, 24536856 - 24536930
Alignment:
| Q |
133 |
tcctggtccagcaattgaactgctgagagatgaagatgtcttgtctgatctcaccttgttggagaaccagatacc |
207 |
Q |
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| T |
24536856 |
tcctagtccagcactagaagtgctaagagatgaagatgtcttgtctgatctcaccttgttggagaatcagatacc |
24536930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 303 - 394
Target Start/End: Complemental strand, 24697675 - 24697584
Alignment:
| Q |
303 |
tgtttattttaggctatcgtcaagatcggattctggacattcgaggtgatcatattcttgatattgtcaacttattcgttaactgggttttt |
394 |
Q |
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| T |
24697675 |
tgtttgttttaggctatcatccaggtccggttctgagcattcatggtgatcatattcttgatattgtcaacttattcgttaattgggatttt |
24697584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 24536771 - 24536831
Alignment:
| Q |
42 |
aaattatgttagtggacggttgttttctgttagagcttctgatagaaaagggattatatga |
102 |
Q |
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| T |
24536771 |
aaattatgttagtggacagtttatttctgttagagcttctgatatcgaagggattatatga |
24536831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 24897299 - 24897248
Alignment:
| Q |
153 |
tgctgagagatgaagatgtcttgtctgatctcaccttgttggagaaccagat |
204 |
Q |
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|||| ||||||||||||||||||||||||||| | |||||||| |||||||| |
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| T |
24897299 |
tgctaagagatgaagatgtcttgtctgatctcgctttgttggaaaaccagat |
24897248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 24856020 - 24855968
Alignment:
| Q |
152 |
ctgctgagagatgaagatgtcttgtctgatctcaccttgttggagaaccagat |
204 |
Q |
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| T |
24856020 |
ctgctaagagacgaagatttcttgtctgatctcactttgttggaaaaccagat |
24855968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 24897404 - 24897365
Alignment:
| Q |
42 |
aaattatgttagtggacggttgttttctgttagagcttct |
81 |
Q |
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| T |
24897404 |
aaattatgttagtagatggttgttttctgttagagcttct |
24897365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 24827728 - 24827674
Alignment:
| Q |
42 |
aaattatgttagtggacggttgttttctgttagagcttctgatagaaaagggatt |
96 |
Q |
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|||||||||||||||| || ||||||||||| |||||||| ||| ||||||||| |
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| T |
24827728 |
aaattatgttagtggatggatgttttctgttggagcttctcatatcaaagggatt |
24827674 |
T |
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