View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_47 (Length: 498)
Name: NF1199_high_47
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_47 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 263 - 470
Target Start/End: Complemental strand, 36053956 - 36053749
Alignment:
| Q |
263 |
attataatggctagcttcgaagacaaattggatcccgtcattgtcttcttctttctcttttgatgcaaatttggtgttacttgaatgaagatctaaacgt |
362 |
Q |
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| T |
36053956 |
attataatggccagcttcgaagacaaattggatcccgtcattgtcttcttctttctcttttgatgcaaatttggtgttacttgaatgaagatctaaacgt |
36053857 |
T |
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| Q |
363 |
gacagtgacaattcagaagttatatagaattcaacagaaaatttgcatagttccatttgtacttcttttagttcatttgcaactcttagatacgtgcact |
462 |
Q |
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| T |
36053856 |
gacagtgacaattcagaagttatatagaatccaacagaaaatttgcatagttccatttgaacttcttttagttcatttgcaactcttagatacgtgcact |
36053757 |
T |
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| Q |
463 |
tgtaaact |
470 |
Q |
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|||||||| |
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| T |
36053756 |
tgtaaact |
36053749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 182 - 269
Target Start/End: Complemental strand, 36054439 - 36054352
Alignment:
| Q |
182 |
ttttaatcattaaattatttgacgggaaaacacatgtgatgactatgatttattgtttctttttccctccttcctagtaaaattataa |
269 |
Q |
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| T |
36054439 |
ttttaatcattaagttatttgacgggaaaacatatgtgatgactatgatttattgtttctttttccctccttcctagtaaaattataa |
36054352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 36054555 - 36054447
Alignment:
| Q |
34 |
agacattttatgaacttgattaannnnnnnataatatctcgtttacggtctccccgaatataattcaattagtaaggacagttcattgaaatatgtggtg |
133 |
Q |
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| T |
36054555 |
agacattttatgaacttgattaatttttt-ataatatctcgtttacggtctccccgagtataattcaattagaaaggacagttcattgaaatatgtggtg |
36054457 |
T |
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| Q |
134 |
gtcgggttca |
143 |
Q |
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| T |
36054456 |
gtcgggttca |
36054447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 17394071 - 17394024
Alignment:
| Q |
156 |
ttcatttattcatcttaaccgtgaaattttaatcattaaattatttga |
203 |
Q |
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| T |
17394071 |
ttcatttattcatcttaaacatgaaattttaaccattatattatttga |
17394024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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