View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_high_5 (Length: 726)

Name: NF1199_high_5
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_high_5
NF1199_high_5
[»] chr7 (1 HSPs)
chr7 (30-657)||(41859460-41860087)


Alignment Details
Target: chr7 (Bit Score: 612; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 30 - 657
Target Start/End: Original strand, 41859460 - 41860087
Alignment:
Q  30 cttgtaaccgttgatatgcttgtcatgaaacgcataaacgacacagcttccatacgtcgtagatgtgtaaacgacatgctcacatggattgcaaaagaag 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41859460 cttgtaaccgttgatatgcttgtcatgaaacgcataaacgacacagcttccatacgtcgtagatgtgtaaacgacatgctcacatggattgcaaaagaag 41859559  T
Q  130 cacgtgagttagaagctggtcgtggacttcatgtgtcacgttttgtatttttcatgagttttaacttgtttggaaatttaatgttgtcgcgtgatatgtt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41859560 cacgtgagttagaagctggtcgtggacttcatgtgtcacgttttgtatttttcatgagttttaacttgtttggaaatttaatgttgtcgcgtgatatgtt 41859659  T
Q  230 tgatatgaaatctgagagtggttccgagtttttcactgcggttatggggttgttggaatggaccggacatgccaatgtgtcggatttgtttccatggtta 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41859660 tgatatgaaatctgagagtggttccgagtttttcactgcggttatggggttgttggaatggaccggacatgccaatgtgtcggatttgtttccatggtta 41859759  T
Q  330 aggtggttggatccacaaggtctaaggagaaaaatggacagggatatgggaaaagctattgaaattgcttccacgtttgtgaaagagcgtttggatttgg 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41859760 aggtggttggatccacaaggtctaaggagaaaaatggacagggatatgggaaaagctattgaaattgcttccacgtttgtgaaagagcgtttggatttgg 41859859  T
Q  430 aagtggaacgtgatgagaaatcaagagatttcttggatgtcttgcttgagttccaaagaaatgagaatcaagatgcagtcaacatctcagataaagatct 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41859860 aagtggaacgtgatgagaaatcaagagatttcttggatgtcttgcttgagttccaaagaaatgagaatcaagatgcagtcaacatctcagataaagatct 41859959  T
Q  530 caacgttttcatcttggtaagtaatttcctccctaaatatagacaattacttatccctttttatataatatatttttctaatccaccatgtttaaaatct 629  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41859960 caacgttttcatcttggtaagtaatttcctccctaaatatagacaattacttatccctttttatataatatatttttctaatccaccatggttaaaatct 41860059  T
Q  630 ttgataggaaaatgatattattcgacat 657  Q
    |||||| |||||||||||| || |||||    
T  41860060 ttgatacgaaaatgatattcttagacat 41860087  T

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