View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_50 (Length: 470)
Name: NF1199_high_50
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_50 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 12 - 442
Target Start/End: Original strand, 5171744 - 5172169
Alignment:
| Q |
12 |
atgaacaaaacacaacggtagttaactgccgctgatattgaatgaacatcaattaactactgtgaataaacgaacgaatgatagttaactgcggttgaaa |
111 |
Q |
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| T |
5171744 |
atgaacaaaacacagcggtagttaactgccgctgatattgaatgaacatcaattaaatactgtaaataaacgaa----tgatagttaactgccgttgaaa |
5171839 |
T |
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| Q |
112 |
tagcaagtgcctaaagagcaattatctttccaactgagtacataactgcctccgctagaggtaacaaagggcccaacataaaagcacagtttatatagac |
211 |
Q |
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| T |
5171840 |
tagcaagtgcctaaagagcaattatctt-ccaactgagcacataactgcctccgctagaggtaacaaagggcccaacataaaagcacaggttatatagac |
5171938 |
T |
|
| Q |
212 |
acaacaacaaactgttagtgttgggtacaacagccacgtttcaatctgtaaaattcagttgtgttaggaatgatgaaggggtcctacgagatttctatgg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5171939 |
acaacaacaaactgttagtgttgggtacaacagccacgtttcaatctgtaaaattcagctgtgttaggaatgatgaaggggtcctacgagatttctatgg |
5172038 |
T |
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| Q |
312 |
tgagaaatatgagctttaagcttaatacagaaaatatgaggccttatatcatcttggatcttccacctctcatagcgcaataatgtcccacaataatgca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5172039 |
tgagaaatatgagctttaagcttaatacagaaaatatgaggccttatatcatcttggatcttccacctctcatagcgcaataatgtcccacaataatgca |
5172138 |
T |
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| Q |
412 |
caagaatttgatggttttgaacctttgaatt |
442 |
Q |
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| T |
5172139 |
caagaatttgatggttttgaacctttgaatt |
5172169 |
T |
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