View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1199_high_51 (Length: 469)
Name: NF1199_high_51
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_51 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 4247417 - 4247868
Alignment:
| Q |
1 |
tatcatgttcattttctatgcatattatatttgttgatgaaatgcaaatccttaatgccagtttttggtcgagcatctgtgtttcgctcgctctttcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4247417 |
tatcatgttcattttctatgcatatt-----tgttgatgaaatgcaaatccttaatgccagtttttggtcgagcatctgtgtttcgc----tctttcaat |
4247507 |
T |
|
| Q |
101 |
gatttgatgccatattccttggatgttttcattcatacctatttttccttttcagtccttatatccattcggaggcgtcagtttcagcaagtaaaagaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4247508 |
gatttgatgccatattccttggatgttttcattcatacctatttttccttttcagtccttatatccatccggaggcgtcagtttcagcaagtaaaagaaa |
4247607 |
T |
|
| Q |
201 |
ccattcctataattcttaatgtattgaaggctgtatctttgaagtcagacgaagaactcgataatgtctttgaccgagctgttgagattgcaaattctat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4247608 |
ccattcctataattcttaatgtattgaaggctgtatctttgaagtcagacgaagaactcgataatgtctttgaccgagctgttgagattgcaaattctat |
4247707 |
T |
|
| Q |
301 |
atatgaagtttgcgataagttggtggtctgtctattataaaacatttcatcttttcctttgttgggagaacataaattattgttatattttcaatttttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4247708 |
atatgaagtttgcgataagttggtggtctgtctattataaaacatttcatcttttcatttgttgggagaacataaattattgttatattttcaatttttt |
4247807 |
T |
|
| Q |
401 |
gccgacattttttcacttaacaggatgatgatgctgcaagggagaagttccgatctctgct |
461 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4247808 |
gccgacattttttcacttaacaggatgaggatgctgcaagggagaagttccgatctctgct |
4247868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 93 - 419
Target Start/End: Complemental strand, 2402573 - 2402245
Alignment:
| Q |
93 |
ctttcaatgatttgatgccatattccttggatgttttcattcatacctatttttcc-ttttcagtccttatatccattcggaggcgtcagtttcagcaag |
191 |
Q |
| |
|
|||||||||| |||| |||| ||||||||||||||||||| ||||||||||||| | |||||||||||||| || | | || |||||||||| |||||| |
|
|
| T |
2402573 |
ctttcaatgagttgacgccacattccttggatgttttcatacatacctattttttcattttcagtccttatctctacccagatgcgtcagtttgagcaag |
2402474 |
T |
|
| Q |
192 |
taaaagaaaccattcctataattcttaatgtattgaaggctgtatctttgaagtcagacgaagaactcgataatgtctttgaccgagctgttgagattgc |
291 |
Q |
| |
|
||| || | ||||| ||||||||| |||||||| |||| |||| || |||| ||| | | ||| ||||||||||| || ||||||||||| | |
|
|
| T |
2402473 |
taagagcagttgttccttcgattcttaattcattgaaggttgtacatttggagacagataaagcaattgatgatgtctttgacagaactgttgagatttc |
2402374 |
T |
|
| Q |
292 |
aaattctatatatgaagtttgcgataagttggtggtctgtctattataaaacatttcatcttttcctttgttgggagaacataaattattgttatatttt |
391 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||| |||| || ||||||||||||||||| | ||||| |
|
|
| T |
2402373 |
aaattctatatatgaagtttgcagtaagttggtggtcttcctattttaaaacatttcatccttttcttttttatgagaacataaattattgattgatttt |
2402274 |
T |
|
| Q |
392 |
caa-ttttttgccgacattttttcactta |
419 |
Q |
| |
|
||| |||||||| |||||||||||||||| |
|
|
| T |
2402273 |
caacttttttgctgacattttttcactta |
2402245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 385 - 461
Target Start/End: Original strand, 2798447 - 2798523
Alignment:
| Q |
385 |
atattttcaattttttgccgacattttttcacttaacaggatgatgatgctgcaagggagaagttccgatctctgct |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2798447 |
atattttcaattttttgccgacattttttcacttaacaggatgatgatgctgcaagggagaagttccgatctctgct |
2798523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University