View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_55 (Length: 462)
Name: NF1199_high_55
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_55 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 30 - 348
Target Start/End: Original strand, 49301506 - 49301824
Alignment:
| Q |
30 |
cttacgacatcactcctttaacgcagtttgtctctgattatgtgagagtggtatcaatgaggtaccccttctggaacagaactcatggtgctgaccactt |
129 |
Q |
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| T |
49301506 |
cttacgacatcactcctttaacgcagtttgtctctgattatgtaagagtggtatcaatgaggtaccccttctggaacagaactcatggtgctgaccactt |
49301605 |
T |
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| Q |
130 |
catgcttgcttgccatgattgggtaatttgttaattcctttttccacacttcacatttattgttccatccattttgggaatagtttcacttttcgctaat |
229 |
Q |
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| T |
49301606 |
catgcttgcttgccatgattgggtaatttgttaattcctttttccacacttcacatttattgttccatccattttatgaatagtttcacttttcgctaat |
49301705 |
T |
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| Q |
230 |
gacacacaattgatgccaactttgcccacatttagttctcccagttattatggatttggccaatctttagtttttgtatgttccattaaagtnnnnnnnt |
329 |
Q |
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| T |
49301706 |
gacacacaattgatgccaactttgcccacatttagttctcccagttattatggatttggccaatctttagtttttgtatgttccattaaagtaaaaaaat |
49301805 |
T |
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| Q |
330 |
taatagttgatatcgtaac |
348 |
Q |
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| T |
49301806 |
taatagttgatatcgtaac |
49301824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 413 - 451
Target Start/End: Original strand, 49301889 - 49301927
Alignment:
| Q |
413 |
cttgacctaaagtggtcccaatgtgaatttcaagccttt |
451 |
Q |
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| T |
49301889 |
cttgacctaaagtggtcccaatgtgaatttcaagccttt |
49301927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 41764646 - 41764700
Alignment:
| Q |
101 |
tggaacagaactcatggtgctgaccacttcatgcttgcttgccatgattgggtaa |
155 |
Q |
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| T |
41764646 |
tggaaccgaagtcatggagctgatcatttcatacttgcttgccatgattgggtaa |
41764700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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