View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_56 (Length: 457)
Name: NF1199_high_56
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_56 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 32 - 428
Target Start/End: Original strand, 34951677 - 34952075
Alignment:
| Q |
32 |
tgagataataaataatttt-ttgttggtatgtgcaaataatcttaaaacaacaactaaaaataacagaagtagtatcttttattagaaggtgcatcttga |
130 |
Q |
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| T |
34951677 |
tgagataataaataatttttttgttggtatgtgcaaataatcttaaaacaacaattaaaaataacagaagtagtatcttttattagaaggtgcatcttga |
34951776 |
T |
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| Q |
131 |
tccatgcttaaaacatattttgaaattgaaatcaatgcaaagataaacttatctctcccttttattttatacaatatttttctcaaaaattaaaatatct |
230 |
Q |
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| T |
34951777 |
tccatgcttaaaacatattttgaaattgaaatcaatgcaatgataaacttatctctcccttttattttatacaaaatttttcttaaaaattaaaatatct |
34951876 |
T |
|
| Q |
231 |
tctataagcaaagcataaaactcattcacaa-nnnnnnnnaaatgaaagtgaaagattaagagagactcaaactcttaacaataaaagagaacttatgct |
329 |
Q |
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| T |
34951877 |
tctataagcaaagcataaaactcattcacaatttttttttaaatgaaagtgaaagattaagagagactcaaactcttaacaataaaagagaacttatgct |
34951976 |
T |
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| Q |
330 |
ttgcaccagaatcaaagtaaaccaaagtgatgaaatgagaataagaaaaagttccaaaagcttcactgccacaatttgtaaagttttcatgcatctgat |
428 |
Q |
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| T |
34951977 |
ttgcaccagaatcaaagtaaaccaaagtgatgaaatgagaataagaaaaagttccaaaagcttcactgccacaatttgtaaagttttcatgcatctgat |
34952075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 31395012 - 31394965
Alignment:
| Q |
308 |
acaataaaagagaacttatgctttgcaccagaatcaaagtaaaccaaa |
355 |
Q |
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||||| |||| |||||||| |||||||| ||||||||||||||||||| |
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| T |
31395012 |
acaatgaaagtgaacttatactttgcacaagaatcaaagtaaaccaaa |
31394965 |
T |
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