View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_high_62 (Length: 440)

Name: NF1199_high_62
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_high_62
NF1199_high_62
[»] chr3 (32 HSPs)
chr3 (14-402)||(38000047-38000428)
chr3 (178-308)||(42257220-42257350)
chr3 (161-308)||(14788495-14788642)
chr3 (161-308)||(14788280-14788427)
chr3 (202-308)||(930369-930475)
chr3 (202-308)||(11442091-11442197)
chr3 (202-308)||(21166092-21166198)
chr3 (202-308)||(32473767-32473873)
chr3 (202-308)||(929917-930023)
chr3 (202-308)||(32474398-32474504)
chr3 (186-292)||(42257982-42258087)
chr3 (202-308)||(43521083-43521186)
chr3 (202-301)||(11441662-11441761)
chr3 (202-308)||(50766636-50766740)
chr3 (202-287)||(5113225-5113310)
chr3 (202-287)||(20586520-20586605)
chr3 (202-287)||(24394670-24394755)
chr3 (202-287)||(26006714-26006799)
chr3 (202-287)||(36992109-36992194)
chr3 (202-287)||(37017549-37017634)
chr3 (202-287)||(45000763-45000848)
chr3 (202-287)||(20586099-20586184)
chr3 (202-285)||(5113644-5113727)
chr3 (202-287)||(24394274-24394359)
chr3 (202-287)||(45000342-45000427)
chr3 (202-287)||(26006173-26006258)
chr3 (202-287)||(43104713-43104798)
chr3 (265-308)||(50836222-50836265)
chr3 (265-308)||(50839588-50839631)
chr3 (273-308)||(24181950-24181985)
chr3 (243-288)||(40820485-40820530)
chr3 (248-293)||(46719683-46719728)
[»] chr5 (20 HSPs)
chr5 (14-314)||(42655488-42655788)
chr5 (202-308)||(5620805-5620911)
chr5 (202-295)||(16996965-16997058)
chr5 (202-287)||(3595804-3595889)
chr5 (202-287)||(8321323-8321408)
chr5 (202-287)||(12330598-12330683)
chr5 (202-287)||(7858354-7858439)
chr5 (202-287)||(12330175-12330260)
chr5 (202-287)||(24027622-24027707)
chr5 (202-287)||(3596229-3596314)
chr5 (202-287)||(8320902-8320987)
chr5 (202-287)||(24027214-24027299)
chr5 (202-308)||(29759603-29759709)
chr5 (202-279)||(7858755-7858832)
chr5 (204-288)||(33283192-33283275)
chr5 (223-287)||(25993525-25993589)
chr5 (208-288)||(33283965-33284044)
chr5 (223-293)||(2319288-2319357)
chr5 (251-308)||(31078462-31078519)
chr5 (244-285)||(4789550-4789590)
[»] chr1 (24 HSPs)
chr1 (161-308)||(48594120-48594267)
chr1 (161-308)||(48598731-48598878)
chr1 (161-308)||(48153054-48153201)
chr1 (161-308)||(50164243-50164390)
chr1 (161-308)||(50164604-50164751)
chr1 (194-308)||(28371631-28371745)
chr1 (202-308)||(2820964-2821070)
chr1 (202-308)||(12800406-12800512)
chr1 (161-308)||(48589033-48589182)
chr1 (202-308)||(12799995-12800101)
chr1 (197-308)||(28371205-28371316)
chr1 (202-292)||(2821425-2821515)
chr1 (202-307)||(33631026-33631131)
chr1 (202-287)||(38328822-38328907)
chr1 (202-287)||(43755876-43755961)
chr1 (202-308)||(43756283-43756389)
chr1 (202-308)||(38469221-38469327)
chr1 (202-287)||(38468933-38469018)
chr1 (248-308)||(17151861-17151921)
chr1 (202-286)||(38328415-38328499)
chr1 (251-308)||(33630483-33630540)
chr1 (244-287)||(32537672-32537715)
chr1 (248-287)||(17151029-17151068)
chr1 (259-288)||(45065378-45065407)
[»] chr8 (15 HSPs)
chr8 (161-308)||(14197665-14197812)
chr8 (161-308)||(39439764-39439911)
chr8 (202-308)||(37657853-37657959)
chr8 (161-308)||(39440494-39440640)
chr8 (202-287)||(30846043-30846128)
chr8 (202-308)||(41714609-41714715)
chr8 (202-308)||(30846432-30846538)
chr8 (202-271)||(41715203-41715272)
chr8 (255-308)||(31408164-31408217)
chr8 (202-271)||(37658480-37658549)
chr8 (248-288)||(35759220-35759260)
chr8 (248-288)||(41348171-41348211)
chr8 (251-288)||(42573606-42573643)
chr8 (202-290)||(30272892-30272979)
chr8 (252-288)||(41092199-41092235)
[»] chr4 (22 HSPs)
chr4 (161-308)||(52532129-52532276)
chr4 (161-308)||(5259223-5259370)
chr4 (165-308)||(52532329-52532472)
chr4 (202-308)||(19860336-19860442)
chr4 (202-308)||(19860808-19860914)
chr4 (202-287)||(20174997-20175082)
chr4 (202-287)||(5235401-5235486)
chr4 (202-308)||(6934438-6934544)
chr4 (202-308)||(30213851-30213957)
chr4 (202-287)||(5235822-5235907)
chr4 (202-308)||(6933827-6933933)
chr4 (248-288)||(11680303-11680343)
chr4 (248-288)||(11688582-11688622)
chr4 (248-288)||(25655620-25655660)
chr4 (248-293)||(12590184-12590229)
chr4 (251-288)||(46764279-46764316)
chr4 (202-262)||(20175361-20175421)
chr4 (174-285)||(35428066-35428177)
chr4 (244-290)||(3847911-3847957)
chr4 (251-288)||(31910581-31910618)
chr4 (244-287)||(39412792-39412835)
chr4 (248-293)||(52758691-52758736)
[»] chr6 (18 HSPs)
chr6 (179-314)||(28535376-28535512)
chr6 (202-308)||(28983228-28983334)
chr6 (202-308)||(34717691-34717797)
chr6 (202-307)||(19062759-19062864)
chr6 (202-308)||(34717248-34717354)
chr6 (202-308)||(28982788-28982893)
chr6 (202-287)||(7635571-7635656)
chr6 (202-287)||(7635151-7635236)
chr6 (202-287)||(18290431-18290516)
chr6 (202-287)||(18290242-18290327)
chr6 (246-308)||(2924952-2925014)
chr6 (202-287)||(4348874-4348959)
chr6 (202-287)||(12999413-12999498)
chr6 (248-288)||(10608301-10608341)
chr6 (248-288)||(930950-930991)
chr6 (269-308)||(14496450-14496489)
chr6 (244-308)||(18605837-18605901)
chr6 (248-288)||(1034748-1034788)
[»] scaffold0095 (1 HSPs)
scaffold0095 (161-308)||(42827-42973)
[»] chr7 (29 HSPs)
chr7 (202-308)||(20560217-20560323)
chr7 (197-308)||(42901067-42901178)
chr7 (202-308)||(20559752-20559858)
chr7 (202-308)||(33139780-33139886)
chr7 (202-308)||(33140230-33140336)
chr7 (161-276)||(35211940-35212055)
chr7 (202-308)||(4179643-4179749)
chr7 (202-308)||(4180274-4180380)
chr7 (194-308)||(42900653-42900767)
chr7 (202-287)||(30414208-30414293)
chr7 (202-308)||(40641106-40641212)
chr7 (202-287)||(25137439-25137524)
chr7 (202-308)||(40640659-40640762)
chr7 (202-287)||(25137860-25137946)
chr7 (204-288)||(24322289-24322372)
chr7 (248-288)||(29006374-29006414)
chr7 (248-288)||(29007180-29007220)
chr7 (223-293)||(45887301-45887370)
chr7 (244-308)||(33686932-33686996)
chr7 (252-288)||(41224828-41224864)
chr7 (248-288)||(44896073-44896113)
chr7 (248-287)||(35613225-35613264)
chr7 (223-293)||(4985351-4985420)
chr7 (223-293)||(4989449-4989518)
chr7 (223-293)||(45887937-45888006)
chr7 (223-293)||(47331910-47331979)
chr7 (244-285)||(42607111-42607151)
chr7 (223-288)||(47331284-47331348)
chr7 (252-288)||(29314608-29314644)
[»] chr2 (19 HSPs)
chr2 (202-308)||(3705343-3705449)
chr2 (202-308)||(16681572-16681678)
chr2 (202-288)||(3705760-3705846)
chr2 (202-287)||(30899417-30899502)
chr2 (202-287)||(6609979-6610064)
chr2 (202-287)||(7994082-7994167)
chr2 (202-287)||(15561976-15562061)
chr2 (202-287)||(16903833-16903918)
chr2 (202-308)||(7994509-7994615)
chr2 (202-308)||(16992327-16992434)
chr2 (202-287)||(15561568-15561653)
chr2 (202-287)||(16903425-16903509)
chr2 (202-287)||(6609578-6609663)
chr2 (202-287)||(30899837-30899922)
chr2 (215-287)||(37996532-37996604)
chr2 (213-288)||(16682213-16682288)
chr2 (222-293)||(41984749-41984819)
chr2 (248-285)||(34617683-34617719)
chr2 (252-288)||(40992249-40992285)
[»] scaffold0508 (2 HSPs)
scaffold0508 (202-287)||(4160-4245)
scaffold0508 (202-308)||(4560-4666)
[»] scaffold0022 (2 HSPs)
scaffold0022 (202-287)||(61601-61686)
scaffold0022 (202-268)||(62023-62089)
[»] scaffold0006 (1 HSPs)
scaffold0006 (202-287)||(202219-202304)
[»] scaffold0136 (1 HSPs)
scaffold0136 (243-310)||(22203-22271)
[»] scaffold0155 (1 HSPs)
scaffold0155 (244-288)||(17366-17410)
[»] scaffold0180 (1 HSPs)
scaffold0180 (248-288)||(23073-23113)


Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 402
Target Start/End: Original strand, 38000047 - 38000428
Alignment:
Q  14 gaagatgaagatatttgggagtaataatcttttagatactcttaattaaatgcgccaaactaaaattaaaaattgttcagattgttgtttaatttacttt 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  38000047 gaagatgaagatatttgggagtaataatcttttaaatactcttaattaaatgcgccaaactaaaattaaaaatt--------tgttgtttaatttacttt 38000138  T
Q  114 ttctggnnnnnnnn-aagaacatgatgaagacgatgttgtttgttatcaccgtcttggttaatgattgtgaggttgaagacaaaagaagaaaatctagtg 212  Q
    ||||||         ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38000139 ttctggtttttttttaagaacatgatgaagacgatgttgtttgttatcaccgtcttggttaatggttgtgaggttgaagacaaaagaagaaaatctagtg 38000238  T
Q  213 atgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccatgctaaacgcga 312  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| ||    
T  38000239 atgaggaagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaacttttccatggtgggaaaaaagcagctttcccatgctaaacgtga 38000338  T
Q  313 ccctacttcttacaaccgtgagcatcactaccagtacgtgtaactaatatttaatggattgttcggagactgtatgagagaatttagtgg 402  Q
    || ||||||||||| ||||||| |||  |||| |||||||||||||||||||||||||||||| ||||| || |  ||||||||||||||    
T  38000339 ccttacttcttacatccgtgagaatctttacccgtacgtgtaactaatatttaatggattgttaggagaatgaacaagagaatttagtgg 38000428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 178 - 308
Target Start/End: Complemental strand, 42257350 - 42257220
Alignment:
Q  178 ttgtgaggttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatg 277  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  42257350 ttgtgaggttgaagacaaaagaagaaaatctagtgatgagggagtatgataaagatgtgttcttggtttgatttaatggtcaaaaactaacttttccatg 42257251  T
Q  278 gtgggaaaaaagtagcttccccatgctaaac 308  Q
    ||||||||||||||| || ||||||||||||    
T  42257250 gtgggaaaaaagtagttttcccatgctaaac 42257220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 161 - 308
Target Start/End: Original strand, 14788495 - 14788642
Alignment:
Q  161 accgtcttggttaatgattgtgaggttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaa 260  Q
    ||||||||| || ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||||    
T  14788495 accgtcttgattgatggttgtgaggttgaagacaaaagaagaaaatctagcgatgaggaagtatgataagaatgtcttcttggtttgatctaatggtcaa 14788594  T
Q  261 aaactaactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    ||||||||||||||||| | ||||||||||||||| |||||| |||||    
T  14788595 aaactaactttcccatgataggaaaaaagtagctttcccatgttaaac 14788642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 161 - 308
Target Start/End: Complemental strand, 14788427 - 14788280
Alignment:
Q  161 accgtcttggttaatgattgtgaggttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaa 260  Q
    |||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  14788427 accgtcttggttgatggttctgaggttgaagacaaaagaagaaaatttagtgatgagggagtatgataaagatgtgttcttggtttgttctaatggtcaa 14788328  T
Q  261 aaactaactttcccatggtggg-aaaaaagtagcttccccatgctaaac 308  Q
    |||||||||||  ||||||||| |||||||||| || ||||||||||||    
T  14788327 aaactaacttt-tcatggtgggaaaaaaagtagatttcccatgctaaac 14788280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 930369 - 930475
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  930369 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccat 930468  T
Q  302 gctaaac 308  Q
    |||||||    
T  930469 gctaaac 930475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 11442091 - 11442197
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11442091 aaaatctagtgatgagggagtatgataaggatgtgttctttgtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccat 11442190  T
Q  302 gctaaac 308  Q
    |||||||    
T  11442191 gctaaac 11442197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 21166092 - 21166198
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||    
T  21166092 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaattttcccatggtgggaaaaaagtaactttcccat 21166191  T
Q  302 gctaaac 308  Q
    |||||||    
T  21166192 gctaaac 21166198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 32473873 - 32473767
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  32473873 aaaatctagtgatgagggagtataataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatagtgggaaaaaagtagctttcccat 32473774  T
Q  302 gctaaac 308  Q
    |||||||    
T  32473773 gctaaac 32473767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 930023 - 929917
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    |||||||||||||| || |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  930023 aaaatctagtgatgggggagtatgataaggatgtgttattggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagatttcccat 929924  T
Q  302 gctaaac 308  Q
    |||||||    
T  929923 gctaaac 929917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 32474398 - 32474504
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||| ||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32474398 aaaatctagtgatgagggagtatggtaaggatgcgttcttcgtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccat 32474497  T
Q  302 gctaaac 308  Q
    |||||||    
T  32474498 gctaaac 32474504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 186 - 292
Target Start/End: Original strand, 42257982 - 42258087
Alignment:
Q  186 ttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaa 285  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| |||||||||||||||||||||||||||||| ||| |||||||    
T  42257982 ttgaagacaaaagaagaaaatctagtgatgagggagtatgataa-gatgtgttattgatttgatctaatggtcaaaaactaactttccaatgatgggaaa 42258080  T
Q  286 aaagtag 292  Q
    |||||||    
T  42258081 aaagtag 42258087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 43521186 - 43521083
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||| |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43521186 aaaatctagtgatgagggagtatgataaggatgtgta---ggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccat 43521090  T
Q  302 gctaaac 308  Q
    |||||||    
T  43521089 gctaaac 43521083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 202 - 301
Target Start/End: Complemental strand, 11441761 - 11441662
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||| |||||    
T  11441761 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgaaaaaaaagtaactttcccat 11441662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 50766740 - 50766636
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  50766740 aaaatctagtgatgagga-gtatgataagaatgtgttcttggtttgatctaatggtcaaaaattaacttt-ccatggtgggaaaaaagtagctttcccat 50766643  T
Q  302 gctaaac 308  Q
    |||||||    
T  50766642 gctaaac 50766636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 5113310 - 5113225
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5113310 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 5113225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 20586520 - 20586605
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20586520 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 20586605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 24394670 - 24394755
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24394670 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 24394755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 26006714 - 26006799
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  26006714 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttctcatgatgggaaaaa 26006799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 36992109 - 36992194
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36992109 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 36992194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 37017549 - 37017634
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37017549 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 37017634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 45000763 - 45000848
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45000763 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 45000848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 20586184 - 20586099
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  20586184 aaaatctagtgatgagggagtatggtaaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatggtgggaaaaa 20586099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 202 - 285
Target Start/End: Original strand, 5113644 - 5113727
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaa 285  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5113644 aaaatctagtgatgagggagtatggtaaggatgtattcttggtttgatctaatggttaaaaactaactttcccatggtgggaaa 5113727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 24394359 - 24394274
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||    
T  24394359 aaaatctagtgatgagggagtatgctaaggatgtgttcttggtttgatctaatggttaaaaactaactttcctatggtggaaaaaa 24394274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 45000427 - 45000342
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| |||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||    
T  45000427 aaaatctagtgatgagggagtatggtaaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatagtgggaaaaa 45000342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 26006258 - 26006173
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||| | |||||| ||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||||    
T  26006258 aaaatctagtgatgaaggagtatggtaaggatgtgttattagtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 26006173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 43104713 - 43104798
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    |||||||| |||||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||  |||||||||    
T  43104713 aaaatctaatgatgagggagtatggtaaagatgtgttcttcgtttgatctaatggttaaaaactaactttcccattatgggaaaaa 43104798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 50836265 - 50836222
Alignment:
Q  265 taactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  50836265 taactttcccatggtgggaaaaaaatagctttcccatgctaaac 50836222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 308
Target Start/End: Original strand, 50839588 - 50839631
Alignment:
Q  265 taactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  50839588 taactttcccatggtgggaaaaaaatagctttcccatgctaaac 50839631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 308
Target Start/End: Original strand, 24181950 - 24181985
Alignment:
Q  273 ccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24181950 ccatggtgggaaaaaagtagctttcccatgctaaac 24181985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 40820485 - 40820530
Alignment:
Q  243 gtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    ||||||||||||||| ||| |  |||||||||||||||||||||||    
T  40820485 gtttgatctaatggtaaaatatcaactttcccatggtgggaaaaaa 40820530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 46719728 - 46719683
Alignment:
Q  248 atctaatggtcaaaaactaactttcccatggtgggaaaaaagtagc 293  Q
    ||||||||| |||||||||||||||||||| || ||||||| ||||    
T  46719728 atctaatggccaaaaactaactttcccatgatgagaaaaaactagc 46719683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 42655488 - 42655788
Alignment:
Q  14 gaagatgaagatatttgggagtaataatcttttagatactcttaattaaatgcgccaaactaaaattaaaaattgttcagattgttgtttaatttacttt 113  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  42655488 gaagatgaagatatttgggaataataatcttttaaatactcttaattaaatgcaccaaactaaaattaaaaattgttcggattgttgtttaatttacttt 42655587  T
Q  114 ttctggnnnnnnnnaagaacatgatgaagacgatgttgtttgttatcaccgtcttggttaatgattgtgaggttgaagacaaaagaagaaaatctagtga 213  Q
    ||||||        |||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  42655588 ttctggttttttttaagaacatcatgaagacgatgttgtttgttatcaccgtcttggttgatggttgtgaggttgaagacaaaagaagaaaatctagtga 42655687  T
Q  214 tgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccatgctaaacgcgac 313  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||| |||    
T  42655688 tgaggaagtatgataaggatgtgttattggtttgatctaatggtcaaaaactaatttttccatggtgggaaagaagtagctttcccatgctaaacgtgac 42655787  T
Q  314 c 314  Q
    |    
T  42655788 c 42655788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 5620805 - 5620911
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||    
T  5620805 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaattttcccatggtgggaaaaaagtaactttcccat 5620904  T
Q  302 gctaaac 308  Q
    |||||||    
T  5620905 gctaaac 5620911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 16996965 - 16997058
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctt 295  Q
    ||||||||||||||||| |||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16996965 aaaatctagtgatgagggagtatggtaaggatgtgttcttcgtttgatctaatggtcaaaaactaactttcccatggtaggaaaaaagtagctt 16997058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 3595889 - 3595804
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3595889 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 3595804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 8321323 - 8321408
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8321323 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 8321408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 12330598 - 12330683
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12330598 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 12330683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 7858439 - 7858354
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    |||||||| |||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7858439 aaaatctaatgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 7858354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 12330260 - 12330175
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  12330260 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaattaactttcccatggtgggaaaaa 12330175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 24027622 - 24027707
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  24027622 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatgatgggaaaaa 24027707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 3596229 - 3596314
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||  ||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  3596229 aaaatctagtgatgagggagtatagtaaggatgtgttcttggtttgatctaatggttaaaaactaattttcccatggtgggaaaaa 3596314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 8320987 - 8320902
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| |||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||    
T  8320987 aaaatctagtgatgagggagtatggtaaggatgtgttattggtttaatctaatggttaaaaactaactttcccatggtgggaaaaa 8320902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 24027299 - 24027214
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||||||||| || ||||||||||||| |||||||||||||||    
T  24027299 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatagttaaaaactaacttttccatggtgggaaaaa 24027214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 29759709 - 29759603
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtag-cttcccca 300  Q
    |||||||||||||| || |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||| || |||||||| ||| ||| ||||    
T  29759709 aaaatctagtgatgggggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatagt-ggaaaaaattagtctttccca 29759611  T
Q  301 tgctaaac 308  Q
    ||||||||    
T  29759610 tgctaaac 29759603  T

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Target: chr5; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 202 - 279
Target Start/End: Original strand, 7858755 - 7858832
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggt 279  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||||||| ||||||| |||||||||||||||||||||    
T  7858755 aaaatctagtgatgagggagtatggtaaggatgtattcttggtttgatttaatggttaaaaactaactttcccatggt 7858832  T

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Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 288
Target Start/End: Complemental strand, 33283275 - 33283192
Alignment:
Q  204 aatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    ||||||||||||||  ||||||||||| |||||||| |  ||||||||||||||||||||  | |||||||||| ||||| ||||    
T  33283275 aatctagtgatgagagagtatgataaaaatgtgttcctcatttgatctaatggtcaaaaa-aacctttcccatgatgggataaaa 33283192  T

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Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 25993525 - 25993589
Alignment:
Q  223 atgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    |||||||||||||||||||   | ||||||||||||| |||  | ||||||||||||||||||||    
T  25993525 atgataaagatgtgttcttcactagatctaatggtcagaaaagagctttcccatggtgggaaaaa 25993589  T

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Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 33283965 - 33284044
Alignment:
Q  208 tagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    ||||||||||  ||||||||||| |||||||| |  |||||||||| |||||||||  | |||||||||||||||| ||||    
T  33283965 tagtgatgagagagtatgataaaaatgtgttcctcatttgatctaacggtcaaaaa-aacctttcccatggtgggataaaa 33284044  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 293
Target Start/End: Complemental strand, 2319357 - 2319288
Alignment:
Q  223 atgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagc 293  Q
    |||||||||||||||||||  || |||| |||||||| |||  | ||||||||||||||||||||| ||||    
T  2319357 atgataaagatgtgttctttattagatccaatggtcagaaaa-agctttcccatggtgggaaaaaactagc 2319288  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 31078519 - 31078462
Alignment:
Q  251 taatggtcaaaaactaactttcccatggtgggaaaaaagtag-cttccccatgctaaac 308  Q
    ||||||| ||||||||||||||||||||| |||||||| ||| ||| ||||||||||||    
T  31078519 taatggttaaaaactaactttcccatggt-ggaaaaaattagtctttcccatgctaaac 31078462  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 4789590 - 4789550
Alignment:
Q  244 tttgatctaatggtcaaaaactaactttcccatggtgggaaa 285  Q
    ||||||||||||||||| || |||||||||||||||||||||    
T  4789590 tttgatctaatggtcaagaa-taactttcccatggtgggaaa 4789550  T

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Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 161 - 308
Target Start/End: Original strand, 48594120 - 48594267
Alignment:
Q  161 accgtcttggttaatgattgtgaggttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaa 260  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  48594120 accgtcttggttgatggttgtgaggttgaagacaaaagaagaaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaa 48594219  T
Q  261 aaactaactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||    
T  48594220 aaactaactttcccatgatgggaaaaaagtagctttccaatgctaaac 48594267  T

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Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 161 - 308
Target Start/End: Original strand, 48598731 - 48598878
Alignment:
Q  161 accgtcttggttaatgattgtgaggttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaa 260  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  48598731 accgtcttggttgatggttgtgaggttgaagacaaaagaagaaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaa 48598830  T
Q  261 aaactaactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||    
T  48598831 aaactaactttcccatgatgggaaaaaagtagctttccaatgctaaac 48598878  T

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Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 161 - 308
Target Start/End: Original strand, 48153054 - 48153201
Alignment:
Q  161 accgtcttggttaatgattgtgaggttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaa 260  Q
    ||||||||| || ||| ||||||| ||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| ||||    
T  48153054 accgtcttgattgatggttgtgagattgaagacaaaagaagaaaatctagtgatgaaggagtatgataaggatgtgttcttggtttgatctaatgatcaa 48153153  T
Q  261 aaactaactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  48153154 aaactaactttcccatattgggaaaaaagtagctttcccatgctaaac 48153201  T

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Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 161 - 308
Target Start/End: Complemental strand, 50164390 - 50164243
Alignment:
Q  161 accgtcttggttaatgattgtgaggttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaa 260  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| |||||||||||||||||||||||     
T  50164390 accgtcttggttgatggttatgaggttgaagacaaaagaagaaaatctagtaatgagggagtatgataaggatgtattcttggtttgatctaatggtcat 50164291  T
Q  261 aaactaactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    |||||||||||||||| ||||||||||||||| || ||||||||||||    
T  50164290 aaactaactttcccatagtgggaaaaaagtagttttcccatgctaaac 50164243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 161 - 308
Target Start/End: Original strand, 50164604 - 50164751
Alignment:
Q  161 accgtcttggttaatgattgtgaggttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaa 260  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| |||||||||||||||||    
T  50164604 accgtcttggttgatggttgtgaggttgaagacaaaagaagaaaatctagtgatgaaggagtatgataaggatgtgttcttgatttgatctaatggtcaa 50164703  T
Q  261 aaactaactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    ||||||||||||| ||||||| |||||||||| || ||||| ||||||    
T  50164704 aaactaactttcctatggtggaaaaaaagtagttttcccatactaaac 50164751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 194 - 308
Target Start/End: Original strand, 28371631 - 28371745
Alignment:
Q  194 aaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagc 293  Q
    ||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28371631 aaaagaagaaaatctagtgatgagggagtatgataaggatgtgtttttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagc 28371730  T
Q  294 ttccccatgctaaac 308  Q
    || ||||||||||||    
T  28371731 tttcccatgctaaac 28371745  T

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Target: chr1; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 2821070 - 2820964
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2821070 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccat 2820971  T
Q  302 gctaaac 308  Q
    | |||||    
T  2820970 gttaaac 2820964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 12800406 - 12800512
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  12800406 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagttttcccat 12800505  T
Q  302 gctaaac 308  Q
    |||||||    
T  12800506 gctaaac 12800512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 161 - 308
Target Start/End: Original strand, 48589033 - 48589182
Alignment:
Q  161 accgtcttggttaatgattgtgaggttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaa 260  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||| ||||||||||| ||| |    
T  48589033 accgtcttggttgatggttgtgaggttgaagacaaaagaagaaaatctagtgattatgaagtatgataaggatgtgttcttgatttgatctaatcgtcga 48589132  T
Q  261 aaactaactttcccatggtgg--gaaaaaagtagcttccccatgctaaac 308  Q
    ||||||| ||||||||||| |   |||||||||| || ||||||||||||    
T  48589133 aaactaattttcccatggtagaaaaaaaaagtagttttcccatgctaaac 48589182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 12800101 - 12799995
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||    
T  12800101 aaaatctagtgatgaggaagtatgataaggatgtgtttttggtttgatctaatggtcaaaaactaactttcccatggtagaaaaaaagtagctttcccat 12800002  T
Q  302 gctaaac 308  Q
     ||||||    
T  12800001 actaaac 12799995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 197 - 308
Target Start/End: Complemental strand, 28371316 - 28371205
Alignment:
Q  197 agaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttc 296  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||| |||     
T  28371316 agaagaaaatctagtgatgagagagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttttcatggtaggaaaaaagtaacttt 28371217  T
Q  297 cccatgctaaac 308  Q
    ||||| ||||||    
T  28371216 cccatactaaac 28371205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 202 - 292
Target Start/End: Original strand, 2821425 - 2821515
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtag 292  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2821425 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaattaactttcccatggtgggaaaaaagtag 2821515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 202 - 307
Target Start/End: Original strand, 33631026 - 33631131
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||| ||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||    
T  33631026 aaaatctagtgatgagggagtatggtaaggatgtgttcttcgtttgatctaatggtcaaaaactaattttcccatggtgggaaaaaagtagttttcccat 33631125  T
Q  302 gctaaa 307  Q
    ||||||    
T  33631126 gctaaa 33631131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 38328822 - 38328907
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||    
T  38328822 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatgattaaaaactaactttcccatgatgggaaaaa 38328907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 43755961 - 43755876
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    |||||||| |||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43755961 aaaatctaatgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 43755876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 43756283 - 43756389
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtag-cttcccca 300  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| ||| ||| ||||    
T  43756283 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatttaatggttaaaaactaactttcccatggt-ggaaaaaattagtctttccca 43756381  T
Q  301 tgctaaac 308  Q
    ||||||||    
T  43756382 tgctaaac 43756389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 38469221 - 38469327
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtag-cttcccca 300  Q
    ||||||||||||||| | |||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| ||| ||| ||||    
T  38469221 aaaatctagtgatgatggagtatggtaaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatggt-ggaaaaaattagcctttccca 38469319  T
Q  301 tgctaaac 308  Q
    ||||||||    
T  38469320 tgctaaac 38469327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 38469018 - 38468933
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| |||||||||||| ||| || ||||||| |||||||||||||||||||||||||||||    
T  38469018 aaaatctagtgatgagggagtatggtaaggatgtgttcttgatttaatataatggttaaaaactaactttcccatggtgggaaaaa 38468933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 17151861 - 17151921
Alignment:
Q  248 atctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  17151861 atctaatggtcaaaaactaactttcccatggtggaaaaaaagtagctttcccatgctaaac 17151921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 38328499 - 38328415
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaa 286  Q
    ||||||||||||||||| |||||| ||| ||| ||||||||||||||||||||||| ||||||||||||| ||||| | ||||||    
T  38328499 aaaatctagtgatgagggagtatggtaaggatttgttcttggtttgatctaatggttaaaaactaacttttccatgataggaaaa 38328415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 33630540 - 33630483
Alignment:
Q  251 taatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  33630540 taatggtcaaaaactaactttcccatggtggaaaataagtagctttcccatgctaaac 33630483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 32537715 - 32537672
Alignment:
Q  244 tttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||| |||||| |||||||||||||||||||||||||||||    
T  32537715 tttgatccaatggttaaaaactaactttcccatggtgggaaaaa 32537672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 17151068 - 17151029
Alignment:
Q  248 atctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  17151068 atctagtggtcaaaaaataactttcccatggtgggaaaaa 17151029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 288
Target Start/End: Original strand, 45065378 - 45065407
Alignment:
Q  259 aaaaactaactttcccatggtgggaaaaaa 288  Q
    ||||||||||||||||||||||||||||||    
T  45065378 aaaaactaactttcccatggtgggaaaaaa 45065407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 7e-59; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 161 - 308
Target Start/End: Complemental strand, 14197812 - 14197665
Alignment:
Q  161 accgtcttggttaatgattgtgaggttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaa 260  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||    
T  14197812 accgtattggttgatggttgtgaggttgaagacaaaagaagaaaatctagtgatgagggagtatgataaggatgtgttcttgctttgatctaatggtcaa 14197713  T
Q  261 aaactaactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  14197712 aaactaactttcccatggtgggaaaaaagtaactttcccatgctaaac 14197665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 161 - 308
Target Start/End: Complemental strand, 39439911 - 39439764
Alignment:
Q  161 accgtcttggttaatgattgtgaggttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaa 260  Q
    |||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||    
T  39439911 accgtcttggttgatggttgtgaggttggagacaaaagaagaaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatagtcaa 39439812  T
Q  261 aaactaactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    ||||||||||| | ||| |||||||||||||||||  |||| ||||||    
T  39439811 aaactaacttttctatgatgggaaaaaagtagcttttccatactaaac 39439764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 37657959 - 37657853
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||    
T  37657959 aaaatctagtgatgagggagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtagaaaaaaagtagctttcccat 37657860  T
Q  302 gctaaac 308  Q
    |||||||    
T  37657859 gctaaac 37657853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 161 - 308
Target Start/End: Original strand, 39440494 - 39440640
Alignment:
Q  161 accgtcttggttaatgattgtgaggttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaa 260  Q
    ||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||| ||||||||||    
T  39440494 accgtcttgattgatggttgtgaggttgaagacaaaagaagaaaatctagtgatgagggagtattataaggatgtgttcttggtttgatttaatggtcaa 39440593  T
Q  261 aaactaactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    |||||||||||   ||||| |||||||||||| || | ||||||||||    
T  39440594 aaactaacttttttatggt-ggaaaaaagtagttttctcatgctaaac 39440640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 30846128 - 30846043
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  30846128 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcctatggtgggaaaaa 30846043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 41714715 - 41714609
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| | |||||||| ||||||||||||||||||||||||| |||||||||||||||  |||| ||  |||||| |||||| |||||    
T  41714715 aaaatctagtgatgagggattatgataaggatgtgttcttggtttgatctaatgatcaaaaactaactttttcatgatgaaaaaaaaatagctttcccat 41714616  T
Q  302 gctaaac 308  Q
    |||||||    
T  41714615 gctaaac 41714609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 30846432 - 30846538
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtag-cttcccca 300  Q
    ||||||||||||||||| |||||| ||| ||| ||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| ||| ||| ||||    
T  30846432 aaaatctagtgatgagggagtatggtaaggatatgttcttggtttgatctaatggttaaaaactaattttcccatggt-ggaaaaaattagcctttccca 30846530  T
Q  301 tgctaaac 308  Q
    ||||||||    
T  30846531 tgctaaac 30846538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 41715203 - 41715272
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaacttt 271  Q
    ||||||||||||||| | |||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  41715203 aaaatctagtgatgatggagtatgataaggatatgttcttggtttgatctaatggtcaaaaactaacttt 41715272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 31408164 - 31408217
Alignment:
Q  255 ggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31408164 ggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaac 31408217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 37658480 - 37658549
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaacttt 271  Q
    |||||||||| |||| | |||||| ||| || |||||||| ||||||||||||||| |||||||||||||    
T  37658480 aaaatctagtaatgaaggagtatggtaaggacgtgttcttcgtttgatctaatggtaaaaaactaacttt 37658549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 35759220 - 35759260
Alignment:
Q  248 atctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  35759220 atctaatggttaaaaactaactttcccatggtggggaaaaa 35759260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 41348211 - 41348171
Alignment:
Q  248 atctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  41348211 atctaatggttaaaaactaactttcccatggtggggaaaaa 41348171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 42573643 - 42573606
Alignment:
Q  251 taatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  42573643 taatggtcaaaaactaattttctcatggtgggaaaaaa 42573606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 290
Target Start/End: Original strand, 30272892 - 30272979
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagt 290  Q
    ||||||||||  ||||| |||||||||||  ||| |||||  ||  |||||||||| |||| || ||||||||||| ||||||||||||    
T  30272892 aaaatctagtattgagggagtatgataaaagtgtattcttcattgaatctaatggttaaaa-cttactttcccatgatgggaaaaaagt 30272979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 41092235 - 41092199
Alignment:
Q  252 aatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  41092235 aatggttaaaaactaacttttccatggtgggaaaaaa 41092199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 161 - 308
Target Start/End: Complemental strand, 52532276 - 52532129
Alignment:
Q  161 accgtcttggttaatgattgtgaggttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaa 260  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||  |||||||    
T  52532276 accgtcttggttgatggttgtgaggttgaagacaaaagaagaaaatctagtgatgagggagtataataaagatgcgttcttggtttgatctgctggtcaa 52532177  T
Q  261 aaactaactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    |||| ||||||||||||||||||||||||||| || ||||||||||||    
T  52532176 aaacaaactttcccatggtgggaaaaaagtagttttcccatgctaaac 52532129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 161 - 308
Target Start/End: Original strand, 5259223 - 5259370
Alignment:
Q  161 accgtcttggttaatgattgtgaggttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaa 260  Q
    |||||||||||| ||  ||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| |    
T  5259223 accgtcttggttgatagttgtgaggttgaaaacaaaagaagaaaatctagtgatgaaggagtatgataaagatgtgttcttgatttgatctaatggtcga 5259322  T
Q  261 aaactaactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    ||||||||||||||||| ||  |||||||||| || | ||||||||||    
T  5259323 aaactaactttcccatgatgaaaaaaaagtagttttctcatgctaaac 5259370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 165 - 308
Target Start/End: Original strand, 52532329 - 52532472
Alignment:
Q  165 tcttggttaatgattgtgaggttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaac 264  Q
    |||||||| ||| |||||||||||||||||||||||||||||||| |||||||| ||||| | || |||||||||||||||||||||| |||||||||||    
T  52532329 tcttggttgatggttgtgaggttgaagacaaaagaagaaaatctaatgatgagggagtataacaaggatgtgttcttggtttgatctactggtcaaaaac 52532428  T
Q  265 taactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    ||||||||| | |||||||||||||||||||  ||||| |||||    
T  52532429 taactttccaacggtgggaaaaaagtagcttttccatgttaaac 52532472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 19860442 - 19860336
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  19860442 aaaatctagtgatgagggagtatggtaagtatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaaatagctttcccat 19860343  T
Q  302 gctaaac 308  Q
    |||||||    
T  19860342 gctaaac 19860336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 19860808 - 19860914
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||    
T  19860808 aaaatctagtgatgagggagtatgaaaaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccacggtgggaaaaaagtaggtttcccat 19860907  T
Q  302 gctaaac 308  Q
    |||||||    
T  19860908 gctaaac 19860914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 20175082 - 20174997
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20175082 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 20174997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 5235486 - 5235401
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5235486 aaaatctagtgatgagtgagtatgataaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 5235401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 6934438 - 6934544
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtag-cttcccca 300  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||| ||||    
T  6934438 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggt-ggaaaaaattagtctttccca 6934536  T
Q  301 tgctaaac 308  Q
    ||||||||    
T  6934537 tgctaaac 6934544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 30213851 - 30213957
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| ||||||||||| || | |||||||||||||||||||||||||||||||||||  |||||| | |||||||||| || |||||    
T  30213851 aaaatctagtgatgagggagtatgataaaaatatattcttggtttgatctaatggtcaaaaactaactttttcatggtagaaaaaaagtagttttcccat 30213950  T
Q  302 gctaaac 308  Q
    | |||||    
T  30213951 gataaac 30213957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 5235822 - 5235907
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||    
T  5235822 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcctatggtaggaaaaa 5235907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 6933933 - 6933827
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtag-cttcccca 300  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||||| | |||||||| ||| ||| ||||    
T  6933933 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaacttttccatgat-ggaaaaaattagtctttccca 6933835  T
Q  301 tgctaaac 308  Q
    ||||||||    
T  6933834 tgctaaac 6933827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 11680343 - 11680303
Alignment:
Q  248 atctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11680343 atctaatggtcaaaaactaactttcccatggtgggaaaaaa 11680303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 11688622 - 11688582
Alignment:
Q  248 atctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11688622 atctaatggtcaaaaactaactttcccatggtgggaaaaaa 11688582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 25655620 - 25655660
Alignment:
Q  248 atctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25655620 atctaatggtcaaaaactaactttcccatggtgggaaaaaa 25655660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 12590184 - 12590229
Alignment:
Q  248 atctaatggtcaaaaactaactttcccatggtgggaaaaaagtagc 293  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||    
T  12590184 atctaatggtcaaaaactaactttcccatggtggaaaaaaactagc 12590229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 46764316 - 46764279
Alignment:
Q  251 taatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46764316 taatggtcaaaaactaactttcccatggtgggaaaaaa 46764279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 20175361 - 20175421
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaa 262  Q
    ||||||||||||||||| || ||| ||| |||||||| |||||||||||||||||| ||||    
T  20175361 aaaatctagtgatgagggagcatggtaaggatgtgttattggtttgatctaatggttaaaa 20175421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 285
Target Start/End: Original strand, 35428066 - 35428177
Alignment:
Q  174 atgattgtgaggttgaagacaaaagaagaa-aatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttc 272  Q
    ||||||||||||||||||| || |||| || ||| ||||| ||||| || |||||||| ||||||||||  || ||||| |||||||  ||| |||||||    
T  35428066 atgattgtgaggttgaagataagagaaaaataatttagtgttgagggagcatgataaaaatgtgttcttaattagatctgatggtcatgaac-aactttc 35428164  T
Q  273 ccatggtgggaaa 285  Q
    |||| ||||||||    
T  35428165 ccatagtgggaaa 35428177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 3847957 - 3847911
Alignment:
Q  244 tttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagt 290  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||    
T  3847957 tttgatctaatggtcaaaaaaatactttcccatggtgggaaaaaagt 3847911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 31910618 - 31910581
Alignment:
Q  251 taatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  31910618 taatggttaaaaactaactttcccatggtgggaaaaaa 31910581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 39412835 - 39412792
Alignment:
Q  244 tttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||| |||||| ||||||||||||||||||| |||||||||    
T  39412835 tttgatccaatggttaaaaactaactttcccatgatgggaaaaa 39412792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 52758691 - 52758736
Alignment:
Q  248 atctaatggtcaaaaactaactttcccatggtgggaaaaaagtagc 293  Q
    ||||||||| |||||||||||||||||||| || ||||||| ||||    
T  52758691 atctaatggccaaaaactaactttcccatgatgagaaaaaactagc 52758736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 7e-50; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 179 - 314
Target Start/End: Original strand, 28535376 - 28535512
Alignment:
Q  179 tgtgaggttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatgg 278  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28535376 tgtgaggttgaagacaaaagaagaaaatataatgatgaggaagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcctatgg 28535475  T
Q  279 tgg-gaaaaaagtagcttccccatgctaaacgcgacc 314  Q
    |||  ||||||||||||| ||||||||||||| ||||    
T  28535476 tggaaaaaaaagtagctttcccatgctaaacgtgacc 28535512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 28983228 - 28983334
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28983228 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccat 28983327  T
Q  302 gctaaac 308  Q
    |||||||    
T  28983328 gctaaac 28983334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 34717691 - 34717797
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34717691 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccat 34717790  T
Q  302 gctaaac 308  Q
    |||||||    
T  34717791 gctaaac 34717797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 202 - 307
Target Start/End: Original strand, 19062759 - 19062864
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  19062759 aaaatctagtgatgagggagtatgataaggatgtgtttttggtttgatctaatggtcaaaaactaactttctcatggtgggaaaaaagtagctttcccat 19062858  T
Q  302 gctaaa 307  Q
    ||||||    
T  19062859 gctaaa 19062864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 34717354 - 34717248
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||  |||||||||| || ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  34717354 aaaatctagtgatgagagagtatgataaggacgtgttcttgatttgatctaatgatcaaaaactaactttcccatggtgggaaaaaagtagctttcccat 34717255  T
Q  302 gctaaac 308  Q
    |||||||    
T  34717254 gctaaac 34717248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 28982893 - 28982788
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |  ||||||||||| || |||||    
T  28982893 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatcgaatggtcaaaaactaactttcccatgat-agaaaaaagtagttttcccat 28982795  T
Q  302 gctaaac 308  Q
    |||||||    
T  28982794 gctaaac 28982788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 7635571 - 7635656
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7635571 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 7635656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 7635236 - 7635151
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  7635236 aaaatctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 7635151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 18290431 - 18290516
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18290431 aaaatctagtgatgagggagtatggtaaggatttgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 18290516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 18290327 - 18290242
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  18290327 aaaatctagtgatgagggagtatggtaaggatttgttcttggtttgatctaatggttaaaaattaactttcccatggtgggaaaaa 18290242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 2924952 - 2925014
Alignment:
Q  246 tgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  2924952 tgatctaatggtcaaaaactaactttcctatggtgggaaaaaagtagctttcccatgctaaac 2925014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 4348959 - 4348874
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||| |||||||  ||||||| |||||    
T  4348959 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaacaaactttcttatggtggaaaaaa 4348874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 12999413 - 12999498
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    |||||||| || ||||| |||||| ||| ||| ||||||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  12999413 aaaatctaatggtgagggagtatggtaaggatatgttcttggtttgatctaatggttaaaaactaacttgctcatggtgggaaaaa 12999498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 10608301 - 10608341
Alignment:
Q  248 atctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10608301 atctaatggtcaaaaactaactttcccatggtgggaaaaaa 10608341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 930991 - 930950
Alignment:
Q  248 atctaatggtcaaaaactaac-tttcccatggtgggaaaaaa 288  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  930991 atctaatggtcaaaaactaacttttcccatggtgggaaaaaa 930950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 14496489 - 14496450
Alignment:
Q  269 tttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  14496489 tttcccatggtgagaaaaaagtagctttcccatgctaaac 14496450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 18605837 - 18605901
Alignment:
Q  244 tttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtag-cttccccatgctaaac 308  Q
    ||||||| |||||| |||||| |||||||||||||| |||||||| ||| ||| ||||||||||||    
T  18605837 tttgatccaatggttaaaaacaaactttcccatggt-ggaaaaaattagcctttcccatgctaaac 18605901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 1034788 - 1034748
Alignment:
Q  248 atctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    |||||||||| ||||||||||||||| |||||||| |||||    
T  1034788 atctaatggttaaaaactaactttcctatggtggggaaaaa 1034748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 161 - 308
Target Start/End: Original strand, 42827 - 42973
Alignment:
Q  161 accgtcttggttaatgattgtgaggttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaa 260  Q
    ||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||| ||||||||||    
T  42827 accgtcttgattgatggttgtgaggttgaagacaaaagaagaaaatctagtgatgagggagtattataaggatgtgttcttggtttgatttaatggtcaa 42926  T
Q  261 aaactaactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    |||||||||||   ||||| |||||||||||| || | ||||||||||    
T  42927 aaactaacttttttatggt-ggaaaaaagtagttttctcatgctaaac 42973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 20560217 - 20560323
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||    
T  20560217 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaatatagctttcccat 20560316  T
Q  302 gctaaac 308  Q
    |||||||    
T  20560317 gctaaac 20560323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 197 - 308
Target Start/End: Original strand, 42901067 - 42901178
Alignment:
Q  197 agaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttc 296  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  42901067 agaagaaaatctagtgatgagggagtatgataacaatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaaatagcttt 42901166  T
Q  297 cccatgctaaac 308  Q
      ||||||||||    
T  42901167 ttcatgctaaac 42901178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 20559858 - 20559752
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||| |||||    
T  20559858 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaaaatagctttcccat 20559759  T
Q  302 gctaaac 308  Q
    |||||||    
T  20559758 gctaaac 20559752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 33139886 - 33139780
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||    
T  33139886 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaaccaactttctcatggtggaaaaaaagtagctttcccat 33139787  T
Q  302 gctaaac 308  Q
    |||||||    
T  33139786 gctaaac 33139780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 33140230 - 33140336
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  33140230 aaaatctagtgatgagggagtatgataaggatgtgttcttagtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtaactttcccat 33140329  T
Q  302 gctaaac 308  Q
     ||||||    
T  33140330 actaaac 33140336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 35212055 - 35211940
Alignment:
Q  161 accgtcttggttaatgattgtgaggttgaagacaaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaa 260  Q
    |||||||||||| |||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||  ||||||||||| |||||| ||||||||||    
T  35212055 accgtcttggttgatgggtgtgaggttgaagacaaaagaagaaaatctaatgatgatgaagtatgataagaatgtgttcttgatttgatttaatggtcaa 35211956  T
Q  261 aaactaactttcccat 276  Q
    ||||||||||| ||||    
T  35211955 aaactaacttttccat 35211940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 4179749 - 4179643
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || | |||    
T  4179749 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggtcaaatactaactttcccatggtgggaaaaaaatagttttctcat 4179650  T
Q  302 gctaaac 308  Q
    |||||||    
T  4179649 gctaaac 4179643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 4180274 - 4180380
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||    
T  4180274 aaaatctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggtcaaaaactaactttcccatggtgggaaaaatgtagcttttccat 4180373  T
Q  302 gctaaac 308  Q
    | |||||    
T  4180374 gttaaac 4180380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 194 - 308
Target Start/End: Complemental strand, 42900767 - 42900653
Alignment:
Q  194 aaaagaagaaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagc 293  Q
    ||||||||||||| |||||||||   |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||| |    
T  42900767 aaaagaagaaaatttagtgatgaacgagtatgataaggatgtgttcttgatttgatctaatggtcaaaaactaactttcccatggtgaaaaaaaagtacc 42900668  T
Q  294 ttccccatgctaaac 308  Q
    ||  |||||||||||    
T  42900667 ttttccatgctaaac 42900653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 30414293 - 30414208
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30414293 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 30414208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 40641106 - 40641212
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||| ||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||   ||||||||| ||| |||||    
T  40641106 aaaatctagtgataagggagtatgataaggatgtgttcttgatttgatctaatggtcaaaaactaactttcccatagtaaaaaaaaagtaactttcccat 40641205  T
Q  302 gctaaac 308  Q
    |||||||    
T  40641206 gctaaac 40641212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 25137524 - 25137439
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| |||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||    
T  25137524 aaaatctagtgatgagggagtatggtaaggatgtgttattgatttgatctaatggttaaaaactaactttcccatggtgggaaaaa 25137439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 40640762 - 40640659
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| || ||||||| ||||||||||||||||||| ||||| | ||||||||||||||||   ||||||||||||||  || |||||    
T  40640762 aaaatctagtgatgagggagaatgataatgatgtgttcttggtttgatttaatgattaaaaactaactttccc---gtgggaaaaaagtaattttcccat 40640666  T
Q  302 gctaaac 308  Q
    |||||||    
T  40640665 gctaaac 40640659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 25137860 - 25137946
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttgg-tttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||| | |||||||||||||| ||||||||| |||||||||||||||||||    
T  25137860 aaaatctagtgatgagggagtatggtaaggatgtgttctttgatttgatctaatggttaaaaactaattttcccatggtgggaaaaa 25137946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 24322289 - 24322372
Alignment:
Q  204 aatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    ||||||||||||||  ||||||||||| |||||||| |  |||||||||| |||||||||  | |||||||||||||||| ||||    
T  24322289 aatctagtgatgagagagtatgataaaaatgtgttcctcatttgatctaacggtcaaaaa-aacctttcccatggtgggataaaa 24322372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 29006414 - 29006374
Alignment:
Q  248 atctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  29006414 atctaatggttaaaaactaactttcccatggtgggaaaaaa 29006374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 29007180 - 29007220
Alignment:
Q  248 atctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  29007180 atctaatggttaaaaactaactttcccatggtgggaaaaaa 29007220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 293
Target Start/End: Complemental strand, 45887370 - 45887301
Alignment:
Q  223 atgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagc 293  Q
    |||||||||||||||||||  || |||| ||||||||||||  | ||||||||||||||||||||| ||||    
T  45887370 atgataaagatgtgttctttattagatccaatggtcaaaaa-aagctttcccatggtgggaaaaaactagc 45887301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 33686996 - 33686932
Alignment:
Q  244 tttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccatgctaaac 308  Q
    |||||||  ||||| |||||||||||||||||||||||||||||   | ||| ||||||||||||    
T  33686996 tttgatccgatggttaaaaactaactttcccatggtgggaaaaattaacctttcccatgctaaac 33686932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 41224828 - 41224864
Alignment:
Q  252 aatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    |||||| ||||||||||||||||||||||||||||||    
T  41224828 aatggttaaaaactaactttcccatggtgggaaaaaa 41224864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 44896113 - 44896073
Alignment:
Q  248 atctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  44896113 atctaatggttaaaaactaactttcccatggtggggaaaaa 44896073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 35613225 - 35613264
Alignment:
Q  248 atctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  35613225 atctagtggtcaaaaactaacttttccatggtgggaaaaa 35613264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 4985351 - 4985420
Alignment:
Q  223 atgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagc 293  Q
    |||||||||||||||||||  || |||| |||||||| |||  | ||||||||||||||||||||| ||||    
T  4985351 atgataaagatgtgttctttattagatccaatggtcagaaaa-agctttcccatggtgggaaaaaactagc 4985420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 4989449 - 4989518
Alignment:
Q  223 atgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagc 293  Q
    |||||||||||||||||||  || |||| |||||||| |||  | ||||||||||||||||||||| ||||    
T  4989449 atgataaagatgtgttctttattagatccaatggtcagaaaa-agctttcccatggtgggaaaaaactagc 4989518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 45887937 - 45888006
Alignment:
Q  223 atgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagc 293  Q
    |||||||||||||||||||  || |||| |||||||| |||  | ||||||||||||||||||||| ||||    
T  45887937 atgataaagatgtgttctttattagatccaatggtcagaaaa-agctttcccatggtgggaaaaaactagc 45888006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 47331910 - 47331979
Alignment:
Q  223 atgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagc 293  Q
    |||||||||||||||||||  || |||| |||||||| |||  | ||||||||||||||||||||| ||||    
T  47331910 atgataaagatgtgttctttattagatccaatggtcagaaaa-agctttcccatggtgggaaaaaactagc 47331979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 42607151 - 42607111
Alignment:
Q  244 tttgatctaatggtcaaaaactaactttcccatggtgggaaa 285  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  42607151 tttgatctaatggacaaaaac-aactttcccatggtgggaaa 42607111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 47331348 - 47331284
Alignment:
Q  223 atgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    |||||||||||||||||||  || |||| |||||||| |||  ||||||| |||||||||||||||    
T  47331348 atgataaagatgtgttctttattagatccaatggtcagaaa-aaactttctcatggtgggaaaaaa 47331284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 29314644 - 29314608
Alignment:
Q  252 aatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  29314644 aatggttaaaaactaactttcccatggtggaaaaaaa 29314608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 3705449 - 3705343
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  3705449 aaaatctagtgatgagggagtatgatatggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcctat 3705350  T
Q  302 gctaaac 308  Q
    |||||||    
T  3705349 gctaaac 3705343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 16681678 - 16681572
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagcttccccat 301  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| || |||||| |||||    
T  16681678 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggccaaaaactaactttcccatgatgggaaataactagctttcccat 16681579  T
Q  302 gctaaac 308  Q
    |||||||    
T  16681578 gctaaac 16681572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 202 - 288
Target Start/End: Original strand, 3705760 - 3705846
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    ||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3705760 aaaatctagtgatgaaggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtggaaaaaaa 3705846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 30899502 - 30899417
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30899502 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 30899417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 6609979 - 6610064
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  6609979 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttaatctaatggttaaaaactaactttcccatggtgggaaaaa 6610064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 7994167 - 7994082
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  7994167 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatgatgggaaaaa 7994082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 15561976 - 15562061
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  15561976 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttaatctaatggttaaaaactaactttcccatggtgggaaaaa 15562061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 16903833 - 16903918
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  16903833 aaaatctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 16903918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 7994509 - 7994615
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtag-cttcccca 300  Q
    ||||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||| ||||    
T  7994509 aaaatctagcgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggt-ggaaaaaattagcctttccca 7994607  T
Q  301 tgctaaac 308  Q
    ||||||||    
T  7994608 tgctaaac 7994615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 16992327 - 16992434
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtag-cttcccca 300  Q
    ||||||||||||||||| |||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||||||| | ||||| ||| ||| ||||    
T  16992327 aaaatctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggttaaaaactaactttcccatggtgaggaaaaattagcctttccca 16992426  T
Q  301 tgctaaac 308  Q
    ||||||||    
T  16992427 tgctaaac 16992434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 15561653 - 15561568
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||    
T  15561653 aaaatctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggttaaaaactaactttccaatggtgggaaaaa 15561568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 16903509 - 16903425
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| |||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||    
T  16903509 aaaatctagtgatgagggagtatggtaaggatgtgttcttg-tttgatctaatggttaaaaactaacttttccatggtgggaaaaa 16903425  T

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Target: chr2; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 6609663 - 6609578
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    |||||||||||| |||| |||||| ||| |||||||| ||||||| |||||||||| ||||||||||||| |||||||||||||||    
T  6609663 aaaatctagtgaagagggagtatggtaaggatgtgttgttggtttcatctaatggttaaaaactaacttttccatggtgggaaaaa 6609578  T

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Target: chr2; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 30899837 - 30899922
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    |||||||| |||||||| |||||| ||| |||||||||||||||||||||||| || |||||||||||||  ||||||||||||||    
T  30899837 aaaatctaatgatgagggagtatggtaaggatgtgttcttggtttgatctaatagttaaaaactaactttttcatggtgggaaaaa 30899922  T

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Target: chr2; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 37996532 - 37996604
Alignment:
Q  215 gaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    |||| |||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||    
T  37996532 gagggagtatgataaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatgatgggaaaaa 37996604  T

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Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 16682213 - 16682288
Alignment:
Q  213 atgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    |||||| |||||| || |||||||||||| ||||||| |||| |||||||||||||||| |||  |||||||||||    
T  16682213 atgagggagtatggtatagatgtgttcttcgtttgatttaatagtcaaaaactaactttgccaatgtgggaaaaaa 16682288  T

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Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 293
Target Start/End: Complemental strand, 41984819 - 41984749
Alignment:
Q  222 tatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagc 293  Q
    ||||||||||||||||||||  || ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  41984819 tatgataaagatgtgttctttattagatctaatggtcagaaa-tagctttcccatggtgagaaaaaactagc 41984749  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 34617719 - 34617683
Alignment:
Q  248 atctaatggtcaaaaactaactttcccatggtgggaaa 285  Q
    |||||||||||||||| |||||||||||||||||||||    
T  34617719 atctaatggtcaaaaa-taactttcccatggtgggaaa 34617683  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 40992285 - 40992249
Alignment:
Q  252 aatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  40992285 aatggttaaaaactaactttcccatggtaggaaaaaa 40992249  T

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Target: scaffold0508 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 4245 - 4160
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4245 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 4160  T

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Target: scaffold0508; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 4560 - 4666
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtag-cttcccca 300  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||||||||| || ||||||||||||||||||| | |||||||| ||| ||| ||||    
T  4560 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaattgttaaaaactaactttcccatgat-ggaaaaaattagtctttccca 4658  T
Q  301 tgctaaac 308  Q
    ||||||||    
T  4659 tgctaaac 4666  T

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Target: scaffold0022 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 61686 - 61601
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  61686 aaaatctagtgatgagggagtatgagaaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatgatgggaaaaa 61601  T

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Target: scaffold0022; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 62023 - 62089
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaac 268  Q
    ||||||||||||||||| |||||| ||| |||||| |||||||||||||||||| | ||||||||||    
T  62023 aaaatctagtgatgagggagtatggtaaggatgtgatcttggtttgatctaatgctaaaaaactaac 62089  T

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Target: scaffold0006 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 202219 - 202304
Alignment:
Q  202 aaaatctagtgatgaggaagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaa 287  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  202219 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatttaatggttaaaaactaacttttccatggtgggaaaaa 202304  T

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Target: scaffold0136 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 22203 - 22271
Alignment:
Q  243 gtttgatctaatggtcaaaaactaactttcccatggtgg-gaaaaaagtagcttccccatgctaaacgc 310  Q
    |||||||||||||||||||||| || |||||||||||||  ||||||||||||| ||||||||||||||    
T  22203 gtttgatctaatggtcaaaaacaaattttcccatggtggaaaaaaaagtagctttcccatgctaaacgc 22271  T

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Target: scaffold0155 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 17410 - 17366
Alignment:
Q  244 tttgatctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||    
T  17410 tttgatcaaatggttaaaaactaactttcccatggtgggaaaaaa 17366  T

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Target: scaffold0180 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 23073 - 23113
Alignment:
Q  248 atctaatggtcaaaaactaactttcccatggtgggaaaaaa 288  Q
    ||||||||||  |||||||||||||||||| ||||||||||    
T  23073 atctaatggttcaaaactaactttcccatgatgggaaaaaa 23113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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