View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1199_high_65 (Length: 428)
Name: NF1199_high_65
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_65 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 28 - 426
Target Start/End: Complemental strand, 42285708 - 42285310
Alignment:
| Q |
28 |
catatataacaatatctctttctatgtgtgttttctttcatttaatttgtattgaaaaattaattatgtgtggtaaaatttaaaagtttgcttgctagca |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42285708 |
catatataacaatatctctttctatgtgtgttttctttcatttaatttgtattggaaaattaattatgtgtggtaaaatttaaaagttttcttgctagca |
42285609 |
T |
|
| Q |
128 |
aagagtgatgaattggagggtaaaatatgtcactattgtacatgctgctattgcacaggctactgtgtccttcgtagatgatggtttggggccactgacc |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42285608 |
aagagtgatgaattggagggtaaaatatgtcactattgtacatgctgctattgcacaggctactgtgtccttcgtagatgatggtttggggccactgacc |
42285509 |
T |
|
| Q |
228 |
cttgtagcccttacccctttctttatcactccttctcttatttcctatcttattaccaatattcacacagttatttggtaattcttagccctcaccttgc |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
42285508 |
cttgtagcccttacccctttctttatcactccttctcttatttcctatcttattaccaatattcacacagttatttggtaatttttagtcctcaccttgc |
42285409 |
T |
|
| Q |
328 |
tttgtttttattaatacaacaattttattattacaaattgttgccaaattagttgatgaactggctaatagatctcaacaatgattctctgctcctcca |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42285408 |
tttgtttttattaatacaacaattttattattacaaattgttgccaaattagctgatgaactggctaatagatctcaacaatgattctcttttcctcca |
42285310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University