View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_69 (Length: 419)
Name: NF1199_high_69
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_69 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 30 - 405
Target Start/End: Original strand, 46450467 - 46450821
Alignment:
| Q |
30 |
attttcatgtgaaaagtctaattacaaaataatattattatcaaataataatgcaaacagggaaaccagaatcctaaacaaaatatatcttatatacttc |
129 |
Q |
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| T |
46450467 |
attttcatgtgaaaagtctaattacaaaataatattattatcaaataataatgcaaacagggaaaccagaatcctaaacaaaatatatcttatatacttc |
46450566 |
T |
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| Q |
130 |
atttgcaaaattggagtcttaggtccaaccaacgtttagaatattctagatgttgtcctggttaatatcatttgaaaagaaagcatcttagagcaaaaac |
229 |
Q |
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| T |
46450567 |
atttgcaaaattgaagtcttaggtccaaccaacgtttagaatattctagatgttgtcctggttaatatgatttgaaaagaaagcatcttagagcaaaaac |
46450666 |
T |
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| Q |
230 |
aataatgtnnnnnnntcattaagagccaccaactagtttaaatcatctatactatagcaatagaatattctagactataccaataattgaggttctacca |
329 |
Q |
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|||||||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
46450667 |
aataatgtaaaaaaatcagtaagagccaccaattagtttaaatcatcta---tatagcaatagaatattctagacta------------------tacca |
46450745 |
T |
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| Q |
330 |
attccaagtggacaactcctcttaacctcaaattcttactgtatagcaccttctggttctaactacagccacgtcc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46450746 |
attccaagtggacaactcctcttaacctcaaattcttattgtatagcaccttctggttctaactacagccacgtcc |
46450821 |
T |
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