View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_74 (Length: 409)
Name: NF1199_high_74
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_74 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 30 - 400
Target Start/End: Complemental strand, 3880543 - 3880170
Alignment:
| Q |
30 |
acaaccgcctagagaaagactgattatcgaggtgctgatgaagcgaactgaagtcaggctctacatgcagcgaacaacaagcaggctaaagaatgttaac |
129 |
Q |
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| T |
3880543 |
acaaccgcctagagaaagactgattatcgaggtgctgatgaagcgaactgaagtcaggctctacatgcagcgaacaacaagcaggctaaagaatgttaac |
3880444 |
T |
|
| Q |
130 |
agccatacaagtatagatcatttgaccaacaaaatcccaggaatgaaaagaaacctaatctctcacagatacaacagccagaaaagttgagacattatcc |
229 |
Q |
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| T |
3880443 |
atccatacaagtatagatcatttgaccaacaaaatcccaggaatgaaaagaaacctaatctctcacagatacaacagccagaaaagttgagacattatcc |
3880344 |
T |
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| Q |
230 |
caaggatcatctaccgctaaacactgatagtaacaactaataatgattcatgcaattatttcaactaaagtcacaaatttcagtaattctttaaactgat |
329 |
Q |
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| T |
3880343 |
caaggatcatctaccgctaaacactgatagtaacaactaataatgattcatgcaattatttcaactaaagtcacaaatttcagtagttctttaaactgat |
3880244 |
T |
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| Q |
330 |
tttgtgagaataccaagaataccctttcataaacttcatcaatatgacatac---aaaagtacatcagtattat |
400 |
Q |
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| T |
3880243 |
tttgtgagaataccaagaataccctttcataaacttcatcaatatgacatacaaaaaaagtacatcagtattat |
3880170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 3866652 - 3866593
Alignment:
| Q |
46 |
agactgattatcgaggtgctgatgaagcgaactgaagtcaggctctacatgcagcgaaca |
105 |
Q |
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| T |
3866652 |
agactgactaacgaggtgctgatgaaccgaactgaagtcaagctctacatgcagcaaaca |
3866593 |
T |
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