View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1199_high_76 (Length: 406)
Name: NF1199_high_76
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_76 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 406
Target Start/End: Complemental strand, 35936695 - 35936288
Alignment:
| Q |
10 |
attattctggatcaacaaccaatcactattaaactcaaaaaa--tatcactctcacttcaaaatttcatattctttttcactattacactcttatgtttc |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35936695 |
attattttggatcaacaaccaatcactattaaactcaaaaaaaatatcactctcacttcaaaatttcatattctttttcactgttacactcttatgtttc |
35936596 |
T |
|
| Q |
108 |
tctatcactaagtaatgtttgaacattaaacaattgtttttgtttaaggagtctgataatatgaaattcagctatgaaataagtataacttaactctgaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| |
|
|
| T |
35936595 |
tctatcactaagtaatgtttgaacattaaacaattgtttttgttcaaggagtctgataatatgaaattcggctatgaaataagtataacttgacttagaa |
35936496 |
T |
|
| Q |
208 |
ttgtttcatccttgaatcaaattcaaattttttcgaactattcgtcatttggtggaactcattaaccacttaaattcaataacttggttaa-------ca |
300 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
35936495 |
ttgttccatccttgaatcaaatttagattttttcgaacgattcgtcatttggtggaactcattaaccacttaagctcaataacttggttaacacttaaca |
35936396 |
T |
|
| Q |
301 |
ctatacaactttcttttaatgttttcttaatgtgcaattcctttaacaaaaattattacatattaaattacatatgacacac--aaataatattttgaca |
398 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| |
|
|
| T |
35936395 |
ctatacaactttcttttaatgctttcttaatgtgcaattcctttaacaaaaattattacatattaaattacatatgacacacataaataagattttaaca |
35936296 |
T |
|
| Q |
399 |
taaagaat |
406 |
Q |
| |
|
|||||||| |
|
|
| T |
35936295 |
taaagaat |
35936288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 21629854 - 21629801
Alignment:
| Q |
248 |
ttcgtcatttggtggaactcattaaccacttaaattcaataacttggttaacac |
301 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || | ||| ||||||||||||| |
|
|
| T |
21629854 |
ttcgtcctttggtggaactcattaaccacttgaacttaatcacttggttaacac |
21629801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 17008229 - 17008171
Alignment:
| Q |
221 |
gaatcaaattcaaattttttcgaactattcgtcatttggtggaactcattaaccacttaa |
280 |
Q |
| |
|
||||||||||||||||||| |||| |||||| ||||||| |||||||||||||| |||| |
|
|
| T |
17008229 |
gaatcaaattcaaatttttctgaacaattcgt-atttggtagaactcattaaccatttaa |
17008171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 18096147 - 18096091
Alignment:
| Q |
222 |
aatcaaattcaaattttttcgaactattcgtcatttggtggaactcattaaccactt |
278 |
Q |
| |
|
||||||||||||||| ||| |||| ||| ||||||| |||||| ||||||||||||| |
|
|
| T |
18096147 |
aatcaaattcaaattcttttgaacaatttgtcatttagtggaattcattaaccactt |
18096091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 21829280 - 21829224
Alignment:
| Q |
222 |
aatcaaattcaaattttttcgaactattcgtcatttggtggaactcattaaccactt |
278 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| || | ||||||||||||| |
|
|
| T |
21829280 |
aatcaaattcaaattttttcgaacgattcgtcgtttgatgaaggtcattaaccactt |
21829224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 33717101 - 33717032
Alignment:
| Q |
206 |
aattgtttcatccttgaatcaaattcaaattttttcgaactattcgtcatttggtggaactcattaacca |
275 |
Q |
| |
|
||||||||||||| ||||||| | ||||| | ||||| |||| ||||||||||||| ||||||||||| |
|
|
| T |
33717101 |
aattgtttcatccaaaaatcaaacttaaattatctcgaattattagtcatttggtggagctcattaacca |
33717032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 37853753 - 37853697
Alignment:
| Q |
222 |
aatcaaattcaaattttttcgaactattcgtcatttggtggaactcattaaccactt |
278 |
Q |
| |
|
||||||||||||||| ||| |||| ||| ||||||| |||||| ||||||||||||| |
|
|
| T |
37853753 |
aatcaaattcaaattcttttgaacaatttgtcatttagtggaattcattaaccactt |
37853697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University