View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_high_85 (Length: 393)

Name: NF1199_high_85
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_high_85
NF1199_high_85
[»] chr5 (19 HSPs)
chr5 (13-358)||(1163472-1163817)
chr5 (13-285)||(1849919-1850194)
chr5 (154-324)||(3299652-3299822)
chr5 (154-324)||(3392545-3392715)
chr5 (13-140)||(3299487-3299617)
chr5 (13-140)||(3392380-3392510)
chr5 (13-151)||(40418237-40418375)
chr5 (13-150)||(39879768-39879905)
chr5 (13-151)||(38987659-38987797)
chr5 (13-150)||(39726372-39726509)
chr5 (154-311)||(40418417-40418571)
chr5 (13-150)||(39399813-39399950)
chr5 (191-281)||(38987873-38987963)
chr5 (191-281)||(39726592-39726682)
chr5 (191-281)||(39879988-39880078)
chr5 (13-137)||(39168800-39168924)
chr5 (209-266)||(39169041-39169098)
chr5 (298-346)||(1850192-1850240)
chr5 (215-257)||(39400042-39400084)
[»] chr4 (3 HSPs)
chr4 (13-140)||(25912295-25912422)
chr4 (154-274)||(25912122-25912239)
chr4 (72-137)||(44444772-44444837)


Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 358
Target Start/End: Complemental strand, 1163817 - 1163472
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacacttttcaaatcaggactcatcttggtcgtattttaaaacc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163817 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacacttttcaaatcaggactcatcttggtcgtattttaaaacc 1163718  T
Q  113 cggtgaccatgctcttggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgtt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163717 cggtgaccatgctcttggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgtt 1163618  T
Q  213 caggataagtgggaatctggttatcaactcttcttaaaagatctacaacaagaccctaaactcctcttcgaccaaagagcaatctaccgaaatccaacct 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163617 caggataagtgggaatctggttatcaactcttcttaaaagatctacaacaagaccctaaactcctcttcgaccaaagagcaatctaccgaaatccaacct 1163518  T
Q  313 actgccatccatctggcccactcttcagatcccccttttatagacc 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  1163517 actgccatccatctggcccactcttcagatcccccttttatagacc 1163472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 1849919 - 1850194
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacac---ttttcaaatcaggactcatcttggtcgtattttaaa 109  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||| |||||||||||||    
T  1849919 aatatcgtttagctaatgccatagttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaggactcatcttagtcgtattttaaa 1850018  T
Q  110 acccggtgaccatgctcttggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcct 209  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1850019 acctggtgaccatgctcttggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaatggtagagttattcct 1850118  T
Q  210 gttcaggataagtgggaatctggttatcaactcttcttaaaagatctacaacaagaccctaaactcctcttcgacc 285  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1850119 gttcaggataagtgggaatctgattatcaactcttcttaaaagatttacaacaagaccctaaactcctcttcgacc 1850194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 154 - 324
Target Start/End: Original strand, 3299652 - 3299822
Alignment:
Q  154 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaaga 253  Q
    |||||||||| ||||| ||||||| |||  ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  3299652 ccattttgatcaccaaaattagttatgccgaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaaga 3299751  T
Q  254 tctacaacaagaccctaaactcctcttcgaccaaagagcaatctaccgaaatccaacctactgccatccat 324  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||    
T  3299752 tctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccat 3299822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 154 - 324
Target Start/End: Original strand, 3392545 - 3392715
Alignment:
Q  154 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaaga 253  Q
    |||||||||| ||||| ||||||| |||  ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  3392545 ccattttgatcaccaaaattagttatgccgaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaaga 3392644  T
Q  254 tctacaacaagaccctaaactcctcttcgaccaaagagcaatctaccgaaatccaacctactgccatccat 324  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||    
T  3392645 tctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccat 3392715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 3299487 - 3299617
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacac---ttttcaaatcaggactcatcttggtcgtattttaaa 109  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||   ||||||||||| ||||||||||||||||||||||||    
T  3299487 aatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaa 3299586  T
Q  110 acccggtgaccatgctcttggttatgacctg 140  Q
    |||||||||||||||||||||||||||||||    
T  3299587 acccggtgaccatgctcttggttatgacctg 3299617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 3392380 - 3392510
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacac---ttttcaaatcaggactcatcttggtcgtattttaaa 109  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||   ||||||||||| ||||||||||||||||||||||||    
T  3392380 aatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaa 3392479  T
Q  110 acccggtgaccatgctcttggttatgacctg 140  Q
    |||||||||||||||||||||||||||||||    
T  3392480 acccggtgaccatgctcttggttatgacctg 3392510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 40418237 - 40418375
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaac 111  Q
    ||||| |||||||| ||||  | ||||||||||| |||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||    
T  40418237 aatattgtttagctgatgctgtggttgctcgtgtgaaagatattggaaataatga-cacaacttttcaaatcaggactcatcttggtcgtattttaaaac 40418335  T
Q  112 ccggtgaccatgctcttggttatgacctgcctgaaggaga 151  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  40418336 ccggtgaccatgctcttggttatgacctgtctggaggaga 40418375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 39879768 - 39879905
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaac 111  Q
    |||||||||||||| ||||  | ||||||||||| ||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||    
T  39879768 aatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga-cacaacttttcaaatcaggactcatcttggtcgtattttaaaac 39879866  T
Q  112 ccggtgaccatgctcttggttatgacctgcctgaaggag 150  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  39879867 ccggtgaccatgctcttggttatgacctgtctggaggag 39879905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 38987659 - 38987797
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaac 111  Q
    |||||||||||||| ||||  | ||||||||||| ||||||| |||||||||| | |||| |||||||||||||||||||||| |||||||| |||||||    
T  38987659 aatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga-cacaacttttcaaatcaggactcatctcggtcgtatcttaaaac 38987757  T
Q  112 ccggtgaccatgctcttggttatgacctgcctgaaggaga 151  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  38987758 ccggtgaccatgctcttggttatgacctgtctggaggaga 38987797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 39726372 - 39726509
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaac 111  Q
    |||||||||||||| ||||  | ||||||||||| ||||||| |||||||||| | |||| |||||||||||||||||||||| |||||||| |||||||    
T  39726372 aatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga-cacaacttttcaaatcaggactcatctcggtcgtatcttaaaac 39726470  T
Q  112 ccggtgaccatgctcttggttatgacctgcctgaaggag 150  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  39726471 ccggtgaccatgctcttggttatgacctgtctggaggag 39726509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 311
Target Start/End: Original strand, 40418417 - 40418571
Alignment:
Q  154 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaaga 253  Q
    |||||||||| ||||||||||||| |||  |||||   ||||||||||||||| || |||| |||||||||||||||| ||||||||||||||| || ||    
T  40418417 ccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctcttcatgataagtgggaatctgattatcaactcttcttcaatga 40418513  T
Q  254 tctacaacaagaccctaaactcctcttcgaccaaagagcaatctaccgaaatccaacc 311  Q
    ||||||||||||| |||||||||||||| ||  |||||||  ||||||| ||| ||||    
T  40418514 tctacaacaagacactaaactcctcttcaacgtaagagcagcctaccgagatcaaacc 40418571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 39399813 - 39399950
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaac 111  Q
    |||| ||||||||| ||||| | |||||||||||  || || ||||||||||| | |||| ||||||||||||||||||||||||||| ||||||||||     
T  39399813 aataccgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataatga-cacaacttttcaaatcaggactcatcttggtcatattttaaaat 39399911  T
Q  112 ccggtgaccatgctcttggttatgacctgcctgaaggag 150  Q
    |||||||| ||||||||||||||||| || ||| |||||    
T  39399912 ccggtgactatgctcttggttatgacttgtctggaggag 39399950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 191 - 281
Target Start/End: Original strand, 38987873 - 38987963
Alignment:
Q  191 gaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaagatctacaacaagaccctaaactcctcttc 281  Q
    |||||||||||||||| ||||  |||||||||||||||||| ||||||||||||||| || |||||||||||||||||| |||| ||||||    
T  38987873 gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaagaccctcaactactcttc 38987963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 191 - 281
Target Start/End: Original strand, 39726592 - 39726682
Alignment:
Q  191 gaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaagatctacaacaagaccctaaactcctcttc 281  Q
    |||||||||||||||| ||||  |||||||||||||||||| ||||||||||||||| || |||||||||||||||||| |||| ||||||    
T  39726592 gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaagaccctcaactactcttc 39726682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 191 - 281
Target Start/End: Original strand, 39879988 - 39880078
Alignment:
Q  191 gaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaagatctacaacaagaccctaaactcctcttc 281  Q
    |||||||||||||||| ||||  |||||||||||||||||| ||||||||||||||| || |||||||||||| || |||||||| |||||    
T  39879988 gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaaaacactaaactcatcttc 39880078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 39168800 - 39168924
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaac 111  Q
    ||||||| |||||| ||||| | |||||||||||  ||||| ||||||||||| | |||| ||||||||||||  |||||||| |||| ||||||||||     
T  39168800 aatatcggttagctgatgccgtggttgctcgtgtggaagattttggaaataatga-cacaacttttcaaatcaaaactcatctaggtcatattttaaaat 39168898  T
Q  112 ccggtgaccatgctcttggttatgac 137  Q
    |||||||| |||||||||||||||||    
T  39168899 ccggtgactatgctcttggttatgac 39168924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 39169041 - 39169098
Alignment:
Q  209 tgttcaggataagtgggaatctggttatcaactcttcttaaaagatctacaacaagac 266  Q
    |||| ||| |||||||||||||| |||||||||||| |||||||||||||||||||||    
T  39169041 tgttgagggtaagtgggaatctgattatcaactctttttaaaagatctacaacaagac 39169098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 1850192 - 1850240
Alignment:
Q  298 accgaaatccaacctactgccatccatctggcccactcttcagatcccc 346  Q
    |||||||||||||| ||||||||||||||||||||| | ||||||||||    
T  1850192 accgaaatccaaccaactgccatccatctggcccacccatcagatcccc 1850240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 39400042 - 39400084
Alignment:
Q  215 ggataagtgggaatctggttatcaactcttcttaaaagatcta 257  Q
    |||||||||| |||||| |||||||||||||||| ||||||||    
T  39400042 ggataagtggcaatctgattatcaactcttcttagaagatcta 39400084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 25912422 - 25912295
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaac 111  Q
    |||||||||||||| |||   | ||||||||||| |||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| ||||||    
T  25912422 aatatcgtttagctgatgatgtggttgctcgtgtgaaagatattggaaataatga-cacaacttttcaaatcaggactcatcttggtcgtattctaaaac 25912324  T
Q  112 ccggtgaccatgctcttggttatgacctg 140  Q
    ||| |||||||||||||||||||||||||    
T  25912323 ccgatgaccatgctcttggttatgacctg 25912295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 154 - 274
Target Start/End: Complemental strand, 25912239 - 25912122
Alignment:
Q  154 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaaga 253  Q
    |||||||||| ||||||||||||| |||  |||||   ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||  |    
T  25912239 ccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaatta 25912143  T
Q  254 tctacaacaagaccctaaact 274  Q
    |||||| ||||||||||||||    
T  25912142 tctacagcaagaccctaaact 25912122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 44444837 - 44444772
Alignment:
Q  72 acttttcaaatcaggactcatcttggtcgtattttaaaacccggtgaccatgctcttggttatgac 137  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  44444837 acttttcaaatcaagactcatcttggtcgtattttaaaacctggtgactatgctcttggttatgac 44444772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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