View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_88 (Length: 384)
Name: NF1199_high_88
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_88 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 59 - 372
Target Start/End: Complemental strand, 5139857 - 5139544
Alignment:
| Q |
59 |
atgtcctccccaggtttgatccatttagttttagcaagcacaaattatgcttgatcatacccgcttcatttctcctaacatgagtactcctttatttcca |
158 |
Q |
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| T |
5139857 |
atgtcctccccaggtttgatccatttagttttagcaagcacaaattatgcttgatcatacccgcttcatttctcctaacatgagtactcctttatttcca |
5139758 |
T |
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| Q |
159 |
tatagatcatatatagtgcaacaaaataattttctttcgtctgcacttaaagtctggatagaaaatatgctctcagccaccgaatcattaatgttcaaca |
258 |
Q |
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||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5139757 |
tatagatcatatatagtgcaacaaaataattctttttggtctgcacttaaagtctgcatagaaaatatgctctcagccaccgaatcattaatgttcaaca |
5139658 |
T |
|
| Q |
259 |
cataatgcatgacattccacaaaccaagtctttgccaacattattgcatgttttaacattnnnnnnnntgcatgttattttcaacacctacatcactaag |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| |
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| T |
5139657 |
cataatgcatgacattccacaaaccaagtctttgccaacattattgcatgttctaacattaaaaaaaatgcatgttattttcaacacctatatcactaag |
5139558 |
T |
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| Q |
359 |
cacacacttattca |
372 |
Q |
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|||||||||||||| |
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| T |
5139557 |
cacacacttattca |
5139544 |
T |
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