View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_high_92 (Length: 381)
Name: NF1199_high_92
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_high_92 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 275
Target Start/End: Original strand, 44446429 - 44446674
Alignment:
| Q |
30 |
actctgacactaaaacaaccactggaggcggctacggtggtggatacggtgactctgacaccaaacccactatcggtggtggttatggtgatgatcgtcg |
129 |
Q |
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| T |
44446429 |
actctgacactaaaacaaccactggaggcggctacggtggtggatatggtgactctgacaccaaaaccactaccggtggtggttatggtgatgatcgtcg |
44446528 |
T |
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| Q |
130 |
tgaagacgttgattatgagaaggaggagaaacgccacagcaaacatgagcatcttggtgagttaggtgctgcagctgccggtggttttgctttggtaann |
229 |
Q |
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| T |
44446529 |
tgaagacgttgattatgagaaggaggagaaacgccacagcaaacatgagcatcttggtgagttaggtgctgcagctgccggtggttttgctttggtaatt |
44446628 |
T |
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| Q |
230 |
nnnnnnaatcactattactcctaattgctatttaatctctcccata |
275 |
Q |
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| T |
44446629 |
ttttttaatcactattactcctaattgctatttaatctctcccata |
44446674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 44446378 - 44446438
Alignment:
| Q |
30 |
actctgacactaaaacaaccactggaggcggctacggtggtggatacggtgactctgacac |
90 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |
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| T |
44446378 |
actccgacactaaaacaaccactggtggcggctacggtggtggttatggtgactctgacac |
44446438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 44446285 - 44446365
Alignment:
| Q |
39 |
ctaaaacaaccactggaggcggctacggtggtggatacggtgactctgacaccaaacccactatcggtggtggttatggtg |
119 |
Q |
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| T |
44446285 |
ctaaaacaaccaccggtggcggctacggtggtggttatggtgactctgacaccaaaacaaccaccggtggcggatatggtg |
44446365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 381
Target Start/End: Original strand, 44446721 - 44446776
Alignment:
| Q |
326 |
aatcaataaattttctctgatggttnnnnnnnttctatttaatttcgccctacaaa |
381 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
44446721 |
aatcaataaattttctctgattgttaaaaaaattctatttaatttcgccctacaaa |
44446776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 44446327 - 44446387
Alignment:
| Q |
30 |
actctgacactaaaacaaccactggaggcggctacggtggtggatacggtgactctgacac |
90 |
Q |
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|||||||||| ||||||||||| || ||||| || |||||||| || |||||||| ||||| |
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| T |
44446327 |
actctgacaccaaaacaaccaccggtggcggatatggtggtggttatggtgactccgacac |
44446387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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