View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1199_low_1 (Length: 1122)
Name: NF1199_low_1
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 743; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 174 - 971
Target Start/End: Complemental strand, 32680435 - 32679640
Alignment:
| Q |
174 |
aaactaatattttccttatcaaatgtaatctcagtcttctgatgcctcccccagttaccctacttccgttgaatttcaacaaccttcgttgagctttctt |
273 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
32680435 |
aaactaatattttccttataaaatgtaatctcagtcttctgatgcctcccccagttaccctacttccgttgaatttcaacaaccttcgttgtgctttctt |
32680336 |
T |
|
| Q |
274 |
aattctctactcagttcagcgacaactgcacttgaaagggcagctgaagagaaatccttattaccgaacaaggtgaaaattgaaaactaatttgtctgtc |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32680335 |
aattctctactcagttcagcgacaactgcacttgaaagggcagctgaagagaaatccttattactgaacaaggtgaaaattgaaaactaatttgtctgtc |
32680236 |
T |
|
| Q |
374 |
tttgtagtgctttggtttacattgtcagatactccctctgatccttttaataagagacaaatgagtcaatcagagttttcctcgatccacgattgacaac |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32680235 |
tttgtagtgctttggtttacattgtcagatactccctctaatccttttaataggagacaaatgagtcaatcagagttttcctcgatccacgattgacaac |
32680136 |
T |
|
| Q |
474 |
ataggttttgaaagcttctcaatcaagggaatttataccaaaatattaagactttttattgtagccctctgtgcttttttggcttgttgatatcatgttt |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32680135 |
ataggttttgaaagcttctcaatcaagggaatttataccaaaatattaagactttttattgtagccctctgtgcttttttggcttgttgatatcatgttt |
32680036 |
T |
|
| Q |
574 |
cgacctgctgttacttggttgtattagttttttagtgtgaactgccagaatgggaatgttgaagattaaacatgcgtgttttgtatgtgtgtgtttaaca |
673 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32680035 |
cgacctactgttacttggttgtattagttttttagtgtgaactgccagaatgggaatgttgaagattaaacatgcgtgttttgtatgt--gtgtttaaca |
32679938 |
T |
|
| Q |
674 |
gcgagagtttgtatgaagatgaggagtttgatcattaccaaaggcaactcgctgcactacttgtatagaaggtattataattccgctcattatttgaact |
773 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32679937 |
gcgagagtttgtatgaagacgaggagtttgatcattaccaaaggcaactcgctgcactacttgtatataaggtattataattccgctcattatttgaact |
32679838 |
T |
|
| Q |
774 |
gtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatattt |
873 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32679837 |
gtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttaggatgtgttttacatgatattt |
32679738 |
T |
|
| Q |
874 |
gagataacaaacaagtattgttggttttcatcctttgtgggttgtacctgacttctaaaccttttcatcctttatggttgtacctgacttctaaacct |
971 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32679737 |
aagataacaaacaagtattgttggttttcatcctttatgggttgtacctgacttctaaaccttttcatcctttatggttgtacctgacttctaaacct |
32679640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 32680753 - 32680703
Alignment:
| Q |
50 |
atgctatgaattatgttgagccttgacatgtatgaagcagtcttatgttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32680753 |
atgctatgaattatgttgagccttgacatgtatgaagcagtcttatgttga |
32680703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 898 - 945
Target Start/End: Complemental strand, 32679676 - 32679630
Alignment:
| Q |
898 |
ttttcatcctttgtgggttgtacctgacttctaaaccttttcatcctt |
945 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32679676 |
ttttcatcctttatgg-ttgtacctgacttctaaaccttttcatcctt |
32679630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 1e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 174 - 404
Target Start/End: Complemental strand, 40117110 - 40116880
Alignment:
| Q |
174 |
aaactaatattttccttatcaaatgtaatctcagtcttctgatgcctcccccagttaccctacttccgttgaatttcaacaaccttcgttgagctttctt |
273 |
Q |
| |
|
||||||||||||| ||| | ||||| |||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| ||| |
|
|
| T |
40117110 |
aaactaatatttttcttgtaaaatgatatctcagtcttccgatgcctcctccagttaccctacttctgttgaatttcaacaaccttcattgagcttgctt |
40117011 |
T |
|
| Q |
274 |
aattctctactcagttcagcgacaactgcacttgaaagggcagctgaagagaaatccttattaccgaacaaggtgaaaattgaaaactaatttgtctgtc |
373 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| ||||| ||||| || |||||||||||||||| ||||||||||||||||||||||| |||||| ||| |
|
|
| T |
40117010 |
aattctttactcagttcagctacaactgcactggaaagagcagccgaggagaaatccttattactgaacaaggtgaaaattgaaaactgatttgttcgtc |
40116911 |
T |
|
| Q |
374 |
tttgtagtgctttggtttacattgtcagata |
404 |
Q |
| |
|
||| |||||||||||||||||||||| |||| |
|
|
| T |
40116910 |
tttctagtgctttggtttacattgtctgata |
40116880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 6e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 6e-74
Query Start/End: Original strand, 458 - 881
Target Start/End: Original strand, 44806374 - 44806795
Alignment:
| Q |
458 |
atccacgattgacaacataggttttgaaagcttctcaatcaagggaatttataccaaaatattaagactttttattgtagccctctgtgcttttttggct |
557 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||| |||||||||||||| ||| |||||||||||| ||||||| ||| ||||||| || |
|
|
| T |
44806374 |
atccactattgacaacataggttttgaaagcttctgaattaagggaatttatacgaaatcattaagacttttccttgtagcatcgtgtccttttttcact |
44806473 |
T |
|
| Q |
558 |
tgttgatatcatgtttcgacctgctgttacttggttgtattagttttttagtgtgaact-gccagaatgggaatgtt---gaagattaaacatgcgtgtt |
653 |
Q |
| |
|
|||||||||||||||| || |||||||||| |||||||||||||||| || | | | ||||| |||||| | | ||||||||| ||||| |
|
|
| T |
44806474 |
cgttgatatcatgtttctttct-----tacttggttgaattagttttttagtgttaatttgtcggaatgaaaatgtttttggggtttaaacatgtgtgtt |
44806568 |
T |
|
| Q |
654 |
ttgtatgtgtgtgtttaacagcgagagtttgtatgaagatgaggagtttgatcattaccaaaggcaactcgctgcactacttgtatagaaggtattataa |
753 |
Q |
| |
|
| ||| ||| || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||| || ||| ||||||||| |||||| | || |
|
|
| T |
44806569 |
tcttattcatgttttgaacagtgagagtttgtacgaagatgaggagtttgatcagcatcaaaggcaacttgccgcattacttgtatcaaaggtagtgta- |
44806667 |
T |
|
| Q |
754 |
ttccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatg |
853 |
Q |
| |
|
||| |||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| ||| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
44806668 |
ttctgctcattatttgaattgtcacatgttctattgataactgtgcgatgctgtttttgcacatacggagtctctttcgtcaagtagctaagctgttatg |
44806767 |
T |
|
| Q |
854 |
atgtgttttacatgatatttgagataac |
881 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
44806768 |
atgtgttttacatgatatttgagataac |
44806795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1018 - 1108
Target Start/End: Original strand, 44806913 - 44807003
Alignment:
| Q |
1018 |
tggtttgtgttttggcatctgattttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcc |
1108 |
Q |
| |
|
|||||||| |||| | |||||||||| || ||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||||||| |
|
|
| T |
44806913 |
tggtttgtattttagtatctgatttttcttcgctcctttatcttaggtcttttattacttgggcgagttgaatgactcactatcctatgcc |
44807003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 936 - 1003
Target Start/End: Original strand, 44806806 - 44806873
Alignment:
| Q |
936 |
tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatcca |
1003 |
Q |
| |
|
|||||| |||| || ||||||| | |||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
44806806 |
tttcattctttttgattgtacccggcttctaaaccaatcaccagaggacttaagttttttcatatcca |
44806873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 3e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 639 - 909
Target Start/End: Complemental strand, 28136291 - 28136025
Alignment:
| Q |
639 |
ttaaacatgcgtgttttgtatgtgtgtgtttaacagcgagagtttgtatgaagatgaggagtttgatcattaccaaaggcaactcgctgcactacttgta |
738 |
Q |
| |
|
||||||||| ||| ||||||||| |||||| || || ||||||||||| ||||| |||| |||||||| ||||||||||||| || |||||||| ||| |
|
|
| T |
28136291 |
ttaaacatgtgtggtttgtatgtatgtgttaaatagtgagagtttgtacgaagaggaggcctttgatcagcaccaaaggcaacttgccgcactactcgta |
28136192 |
T |
|
| Q |
739 |
tagaaggtattataattccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgct-atttttgcatatatggagtctctttcttcatg |
837 |
Q |
| |
|
| |||||| ||| ||| |||||||||||||||||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28136191 |
tccaaggtagtattgttctgctcattatttgaactgtcacatgttctattggtgactatgcgatgctgttttttgcatatatggagtctctttcttcatg |
28136092 |
T |
|
| Q |
838 |
tagctaagctgttatgatgtgttttacatgatatttgagataacaaacaagtattgttggttttcatccttt |
909 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
28136091 |
t-----agctgttatgatgtgttttacatgatatttgagataacaaataagtattgttggctttcatccttt |
28136025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1018 - 1108
Target Start/End: Complemental strand, 28135930 - 28135839
Alignment:
| Q |
1018 |
tggtttgtgttttggc-atctgattttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcc |
1108 |
Q |
| |
|
||||||||||||| | |||| ||||| ||| ||||||| ||||||||| |||||||||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
28135930 |
tggtttgtgtttttactatctaattttttttcgctcctttatcttaggtattttattacttgggtgagctgaatgactcactatcctatgcc |
28135839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 936 - 1016
Target Start/End: Complemental strand, 28136035 - 28135955
Alignment:
| Q |
936 |
tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc |
1016 |
Q |
| |
|
||||||||||| | ||||||| | |||||||||| |||||| ||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
28136035 |
tttcatccttttttattgtacccggcttctaaaccaatcaccagagtccttatgttttttcatatccctatattattattc |
28135955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 2e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 768 - 934
Target Start/End: Original strand, 2230444 - 2230609
Alignment:
| Q |
768 |
tgaactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatg |
867 |
Q |
| |
|
|||||||||| ||||||||||| ||| | |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2230444 |
tgaactgtcacatgttctattgataaccgagcgatgctgtttttgcatatatggagtctctttcttcatgtggctaagctgttatgatgtgttttacatg |
2230543 |
T |
|
| Q |
868 |
atatttgagataacaaacaagtattgttggttttcatcctttgtgggttgtacctgacttctaaacc |
934 |
Q |
| |
|
|||||||||||| |||| || |||| | || |||||||||| | | ||||||||| |||||||||| |
|
|
| T |
2230544 |
atatttgagatagcaaataaatattttcggccttcatccttt-ttgattgtacctggcttctaaacc |
2230609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 937 - 1016
Target Start/End: Original strand, 2230576 - 2230655
Alignment:
| Q |
937 |
ttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc |
1016 |
Q |
| |
|
|||||||||| || ||||||||| |||||||||| |||||| ||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
2230576 |
ttcatcctttttgattgtacctggcttctaaaccaatcaccagaggccttaagtttttttatatccatatattattattc |
2230655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1040 - 1108
Target Start/End: Original strand, 2230704 - 2230772
Alignment:
| Q |
1040 |
ttttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcc |
1108 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
2230704 |
ttttttttcgctcctttatcttaggtctttaattacttgggcgagctgaatgactcactatcctatgcc |
2230772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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