View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_103 (Length: 388)
Name: NF1199_low_103
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_103 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 34 - 388
Target Start/End: Original strand, 44698752 - 44699107
Alignment:
| Q |
34 |
tttgcttcttcctggg-attaaaatcagatggagtagtactagattaattagtttagatttgagtgtcgctctttttcgaggtacatcatcatgatatgt |
132 |
Q |
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| T |
44698752 |
tttgcttcttcctggggattaaaatcagatggagtagtactagattaattagtttagatttgagtgtcgctctttttcgaggtacatcatcatgatatgt |
44698851 |
T |
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| Q |
133 |
ttacttctctgttctttctttctttttgtctaaagcatctgaacagtttttagataactaggatttggatttgtacgtggagttggattgtttctttcta |
232 |
Q |
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| T |
44698852 |
ttccttctctgttctttctttctttttgtctaaagcatctgaacagttattagataactaggatttggatttgtacgtggagttggattgtttctttcta |
44698951 |
T |
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| Q |
233 |
catttacttcttttacacgcaacgcaaacgagaccagagagtgagaagtagaaggaatgattgtgtgctgtacctggccagttaatttgataacaatgga |
332 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44698952 |
catttacttcttttacacgcaacgcaaacaagaccagagagtgagatgtagaaggaatgattgtgtgctgtacctggccagttaatttgataagaatgga |
44699051 |
T |
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| Q |
333 |
agagagaaagcgtagcttctgctgctactacttttgtaactcatctcactacaaga |
388 |
Q |
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| T |
44699052 |
agagagaaagcgtagcttctgctgctactaattttgtaactcatctcactacaaga |
44699107 |
T |
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