View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_105 (Length: 383)
Name: NF1199_low_105
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_105 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 31 - 378
Target Start/End: Original strand, 44614765 - 44615112
Alignment:
| Q |
31 |
ggttagcagtgtggagttcacacccttgactgtctggttatgggtaggaatagcaaaggatcaataaataacagtttttgttaaaactttagtgtttgat |
130 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44614765 |
ggttagcagtgtggagttcacacccttgactgtttggttatgggtaggaatagcaaaggatcaataaatgacagtttttgttaaaactttagtgtttgat |
44614864 |
T |
|
| Q |
131 |
tgtgttttgttaggcttttaatttcaagtttgagagtttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactt |
230 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44614865 |
tgtgttttgttaggcttttaatttcaattttgagagtttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactt |
44614964 |
T |
|
| Q |
231 |
tagtgtgtgactgtgttttgttatggcttctgctatcaatttaataatgtaataaatcctccaaacataacaaagaattataagagtcatcagtgactta |
330 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44614965 |
tagtgtgtgattgtgttttgttatggcttctgctatcaatttaataatgtaataaatcctccaaacataacaaagaattataagagtcatcagtgactta |
44615064 |
T |
|
| Q |
331 |
aatattatttattagcacaattattcacccacttatgcctttgctact |
378 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
44615065 |
aatattctttattagcacaattattcacccacttatgcctttgttact |
44615112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 31 - 378
Target Start/End: Complemental strand, 44793804 - 44793457
Alignment:
| Q |
31 |
ggttagcagtgtggagttcacacccttgactgtctggttatgggtaggaatagcaaaggatcaataaataacagtttttgttaaaactttagtgtttgat |
130 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44793804 |
ggttagcagtgtggagttcacacccttgactgtttggttatgggtaggaatagcaaaggatcaataaatgacagtttttgttaaaactttagtgtttgat |
44793705 |
T |
|
| Q |
131 |
tgtgttttgttaggcttttaatttcaagtttgagagtttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactt |
230 |
Q |
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||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44793704 |
tgtgttttgtttggctttcaatttcaattttgagagtttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactt |
44793605 |
T |
|
| Q |
231 |
tagtgtgtgactgtgttttgttatggcttctgctatcaatttaataatgtaataaatcctccaaacataacaaagaattataagagtcatcagtgactta |
330 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44793604 |
tagtgtgtgattgtgttttgttatggcttctgctatcaatttaataatgtaataaatcctccaaacataacaaagaattttaagagtcatcagtgactta |
44793505 |
T |
|
| Q |
331 |
aatattatttattagcacaattattcacccacttatgcctttgctact |
378 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
44793504 |
aatattctttattagcacaattattcacccacttatgcctttgttact |
44793457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 31 - 220
Target Start/End: Complemental strand, 44789949 - 44789760
Alignment:
| Q |
31 |
ggttagcagtgtggagttcacacccttgactgtctggttatgggtaggaatagcaaaggatcaataaataacagtttttgttaaaactttagtgtttgat |
130 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44789949 |
ggttagcagtgtggagttcacacccttgactgtttggttatgggtaggaatagcaaaggatcaataaatgacagtttttgttaaaactttagtgtttgat |
44789850 |
T |
|
| Q |
131 |
tgtgttttgttaggcttttaatttcaagtttgagagtttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaatttt |
220 |
Q |
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||||||||||| |||||| |||||||||||||| |||||||||||| ||||||||||||||| || |||||||||||||||||| |||| |
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| T |
44789849 |
tgtgttttgtttggctttcaatttcaagtttgacagtttttgtatgaaaatcttctgctatcgagtgattaatgtaataaatggattttt |
44789760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 121 - 278
Target Start/End: Original strand, 44146823 - 44146980
Alignment:
| Q |
121 |
agtgtttgattgtgttttgttaggcttttaatttcaagtttgagagtttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaatttt |
220 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||| |||| |||||||||||||||||||||||| ||| |||| |||||||||| ||||| |||| |
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| T |
44146823 |
agtgtttgattgtgtttttttctgctttcaatttcaaggttgacagtttttgtatggaaatcttctgccatcgagttaataatgtaatagatggagtttt |
44146922 |
T |
|
| Q |
221 |
gttaaaactttagtgtgtgactgtgttttgttatggcttctgctatcaatttaataat |
278 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||||||| |||| | |||||||| |
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| T |
44146923 |
gttaaaattttagtgcttgactgtgttttgttatggcttctgttatcgagttaataat |
44146980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 121 - 266
Target Start/End: Complemental strand, 44783517 - 44783372
Alignment:
| Q |
121 |
agtgtttgattgtgttttgttaggcttttaatttcaagtttgagagtttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaatttt |
220 |
Q |
| |
|
|||||||||||||||||| || |||| ||||||||||||| ||||||||| |||||||||||||||| |||| |||||||||||||||| || | |
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| T |
44783517 |
agtgtttgattgtgtttttttctactttcaatttcaagtttggtgatttttgtattgaaatcttctgctatcgagttaataatgtaataaatggacttct |
44783418 |
T |
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| Q |
221 |
gttaaaactttagtgtgtgactgtgttttgttatggcttctgctat |
266 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44783417 |
gttaaaactttagtgtgtgactaggttttgttatggcttctgctat |
44783372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 204 - 304
Target Start/End: Complemental strand, 44789743 - 44789646
Alignment:
| Q |
204 |
gtaataaatggaattttgttaaaactttagtgtgtgactgtgttttgttatggcttctgctatcaatttaataatgtaataaatcctccaaacataacaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
44789743 |
gtaataaatggaattttgttaaaactttagtgtgtgactgtgctt--ttatggcttctgct-tcaatttaataatgtaatacatcctccaaacataacaa |
44789647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 29505328 - 29505175
Alignment:
| Q |
31 |
ggttagcagtgtggagttcacacccttgactgtctggttatgggtaggaatagcaaaggatcaataaataacagtttttgttaaaactttagtgtttgat |
130 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||| | |||||||||| ||||||| ||||||| ||| ||||||||| |||||||||||| || |
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| T |
29505328 |
ggttagcagtgtggagttcacactcttgactgtttggttaagagtaggaataggaaaggatgaataaatgaca--ttttgttaagactttagtgttttat |
29505231 |
T |
|
| Q |
131 |
tgtgttttgttaggcttttaatttcaagtttgagagtttttgtatggaaatcttctg |
187 |
Q |
| |
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|||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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|
| T |
29505230 |
tgtg-tttgttaggctttcaatttcaagtttgacagtttttgtatggaaatcttctg |
29505175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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