View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_106 (Length: 382)

Name: NF1199_low_106
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_106
NF1199_low_106
[»] chr1 (9 HSPs)
chr1 (134-372)||(26833438-26833676)
chr1 (134-371)||(26786649-26786886)
chr1 (134-316)||(26799425-26799607)
chr1 (134-316)||(26823517-26823699)
chr1 (1-63)||(26833305-26833367)
chr1 (2-47)||(26799300-26799345)
chr1 (2-47)||(26823391-26823436)
chr1 (2-54)||(26786518-26786570)
chr1 (203-260)||(41545758-41545815)
[»] chr7 (1 HSPs)
chr7 (136-317)||(41916711-41916892)
[»] chr6 (1 HSPs)
chr6 (136-179)||(2021636-2021679)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 134 - 372
Target Start/End: Original strand, 26833438 - 26833676
Alignment:
Q  134 tcacctctctttcattatacattggaacttgaacaagaaccatagggtaattagagtttcccaactcaacatcatccttaatagtctcccatttataacg 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26833438 tcacctctctttcattatacattggaacttgaacaagaaccatagggtaattagagtttcccaactcaacatcatccttaatagtctcccatttataacg 26833537  T
Q  234 tttctctggttttctaccaaacaacttcacataagaaatcacaattcccatgtaaactctctcaaccaacatcatcaacgacatgcctaggcaaagaaac 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26833538 tttctctggttttctaccaaacaacttcacataagaaatcacaattcccatgtaaactctctcaaccaacatcatcaacgacatgcctaggcaaacaaac 26833637  T
Q  334 actgcaactctcagcaatggcacgatcaatggctctctg 372  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26833638 actgcaactctcagcaatggcacgatcaatggctctctg 26833676  T

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Target: chr1; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 134 - 371
Target Start/End: Original strand, 26786649 - 26786886
Alignment:
Q  134 tcacctctctttcattatacattggaacttgaacaagaaccatagggtaattagagtttcccaactcaacatcatccttaatagtctcccatttataacg 233  Q
    |||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26786649 tcacctctctttcattgtacattgggatttgaacaagaacaatagggtaattagagttttccaactcaacatcatccttaatagtctcccatttataacg 26786748  T
Q  234 tttctctggttttctaccaaacaacttcacataagaaatcacaattcccatgtaaactctctcaaccaacatcatcaacgacatgcctaggcaaagaaac 333  Q
    |||||| ||| ||||   ||||||||||||  || ||||||||||||||||||||||| |||||||||| |||||||| ||||||| |||||| | ||||    
T  26786749 tttctcaggtgttcttttaaacaacttcactaaacaaatcacaattcccatgtaaactatctcaaccaatatcatcaatgacatgcttaggcagataaac 26786848  T
Q  334 actgcaactctcagcaatggcacgatcaatggctctct 371  Q
    |||||| ||||||||| |||||||||||| || |||||    
T  26786849 actgcagctctcagcattggcacgatcaaaggttctct 26786886  T

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Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 134 - 316
Target Start/End: Original strand, 26799425 - 26799607
Alignment:
Q  134 tcacctctctttcattatacattggaacttgaacaagaaccatagggtaattagagtttcccaactcaacatcatccttaatagtctcccatttataacg 233  Q
    |||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||| ||   |||||||||     
T  26799425 tcacctctctttcattgtacattggaacttgaacaagaaccatgggataattagagtttcccaactcaacatcatcctcaatagccttaaatttataaca 26799524  T
Q  234 tttctctggttttctaccaaacaacttcacataagaaatcacaattcccatgtaaactctctcaaccaacatcatcaacgaca 316  Q
     ||||||||| ||||   |||||||||||||||| |||| |||||| ||||||| ||| | ||||||||||| ||||| ||||    
T  26799525 cttctctggtgttctcttaaacaacttcacataacaaatgacaattgccatgtatactttttcaaccaacattatcaatgaca 26799607  T

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Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 134 - 316
Target Start/End: Original strand, 26823517 - 26823699
Alignment:
Q  134 tcacctctctttcattatacattggaacttgaacaagaaccatagggtaattagagtttcccaactcaacatcatccttaatagtctcccatttataacg 233  Q
    |||||||||||||||| |||||||| |  || ||||||||||| || ||||  ||||||||||||||||||||||||| ||||| |||  ||||||||||    
T  26823517 tcacctctctttcattgtacattgggatctggacaagaaccatgggataataggagtttcccaactcaacatcatcctcaatagcctcaaatttataacg 26823616  T
Q  234 tttctctggttttctaccaaacaacttcacataagaaatcacaattcccatgtaaactctctcaaccaacatcatcaacgaca 316  Q
    |||||||||| ||||   |||||||||||||||| |||| |||||| ||||||||||| ||||||||||||| ||||| ||||    
T  26823617 tttctctggtgttcttttaaacaacttcacataacaaatgacaattgccatgtaaactttctcaaccaacattatcaatgaca 26823699  T

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Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 26833305 - 26833367
Alignment:
Q  1 ccacatgcagcaccaattgataactgataaacctgcattttgaacaatttatatgtcaatttc 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26833305 ccacatgcagcaccaattgataactgataaacctgcattttgaacaatttatatgtcaatttc 26833367  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 26799300 - 26799345
Alignment:
Q  2 cacatgcagcaccaattgataactgataaacctgcattttgaacaa 47  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||    
T  26799300 cacatgcagcaccaattgatagctgataaacctgcaatttgaacaa 26799345  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 26823391 - 26823436
Alignment:
Q  2 cacatgcagcaccaattgataactgataaacctgcattttgaacaa 47  Q
    |||||||||||||||||||||||||||||||||||| | |||||||    
T  26823391 cacatgcagcaccaattgataactgataaacctgcaatatgaacaa 26823436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 26786518 - 26786570
Alignment:
Q  2 cacatgcagcaccaattgataactgataaacctgcattttgaacaatttatat 54  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||| || |||||    
T  26786518 cacatgcagcaccaattgatagctgataaacctacatttagaaccatatatat 26786570  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 41545815 - 41545758
Alignment:
Q  203 catcatccttaatagtctcccatttataacgtttctctggttttctaccaaacaactt 260  Q
    ||||||||||||  | ||||||||||||| |||||||||||||   ||||||||||||    
T  41545815 catcatccttaagtgcctcccatttataatgtttctctggtttatgaccaaacaactt 41545758  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 136 - 317
Target Start/End: Complemental strand, 41916892 - 41916711
Alignment:
Q  136 acctctctttcattatacattggaacttgaacaagaaccatagggtaattagagtttcccaactcaacatcatccttaatagtctcccatttataacgtt 235  Q
    |||||||||||||| ||||| || | |||||||||||||||||| |||  |||||| || ||||||| |||||||||||| |  |||||||| |||||||    
T  41916892 acctctctttcattgtacataggtatttgaacaagaaccataggataacaagagttccctaactcaatatcatccttaatcggttcccatttgtaacgtt 41916793  T
Q  236 tctctggttttctaccaaacaacttcacataagaaatcacaattcccatgtaaactctctcaaccaacatcatcaacgacat 317  Q
    | || |||||||| ||||| | |||||||  || ||| ||||  ||||| ||||| |||||||  |||||||||| ||||||    
T  41916792 tttcaggttttcttccaaatagcttcacaagagtaatgacaacacccatataaaccctctcaatgaacatcatcaccgacat 41916711  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 2021679 - 2021636
Alignment:
Q  136 acctctctttcattatacattggaacttgaacaagaaccatagg 179  Q
    ||||||||||||||| |||||||||  |||||||||||||||||    
T  2021679 acctctctttcattacacattggaatctgaacaagaaccatagg 2021636  T

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